View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_high_4 (Length: 479)
Name: NF9806_high_4
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_high_4 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 41 - 135
Target Start/End: Complemental strand, 42339852 - 42339757
Alignment:
| Q |
41 |
aaaatgcaaacaaccggcgccgcatatatacggaacacctac-aaaaccaaacacccataacttccttgttaataatgaggccaaaatatacatac |
135 |
Q |
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| T |
42339852 |
aaaatacaagcaaacggtgccacatatatacggaacacctacaaaaaccaagcacccctatcctcctagataataatgaggacaaaatatacatac |
42339757 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 26042338 - 26042306
Alignment:
| Q |
50 |
acaaccggcgccgcatatatacggaacacctac |
82 |
Q |
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| T |
26042338 |
acaaccggcgccgcatatatacggaacacctac |
26042306 |
T |
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Target: scaffold0008 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 56 - 95
Target Start/End: Complemental strand, 60187 - 60148
Alignment:
| Q |
56 |
ggcgccgcatatatacggaacacctacaaaaccaaacacc |
95 |
Q |
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| T |
60187 |
ggcgccgcatatatacggaacacctccaaaaacaaacacc |
60148 |
T |
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