View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9806_low_1 (Length: 721)
Name: NF9806_low_1
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 612; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 612; E-Value: 0
Query Start/End: Original strand, 1 - 712
Target Start/End: Complemental strand, 47198502 - 47197791
Alignment:
| Q |
1 |
accaacattgcatagcctttgcttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||| ||||||||||| |||||||||||||| |||| |
|
|
| T |
47198502 |
accaacattgcatagcctttgcttaagctatctgagtgatcttggagtttagccccaagcactatgccaattacaacttgggacacaaacatttgcacac |
47198403 |
T |
|
| Q |
101 |
atgcttccaatagaagtacctttctcccaactttgtccacaaaatagacagacactaaagtgcagaggacattcacacctcctgtgatcactgatgagta |
200 |
Q |
| |
|
|||||||||||| || ||| |||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
47198402 |
atgcttccaataagagcacccttctcccagctttgtccacaaaatatacagacactaaagtgcataggacattcacacctcctgtgatcactgatgagta |
47198303 |
T |
|
| Q |
201 |
aagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattgctggaagacctgtacataa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47198302 |
aagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattgctggaagacctgtacataa |
47198203 |
T |
|
| Q |
301 |
ttaaacataataaaaattcatgtatttggtttaatattttaacattgattcggctgcattatgcattaaaatgattcattattaataattaatgctatta |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47198202 |
ttaaacataataaaaatttatgtatttggtttaatattttaacattgattcgactgcattatgcattaaaatgattcatgattaataattaatgctatta |
47198103 |
T |
|
| Q |
401 |
taattattgagtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagcc |
500 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47198102 |
tagttattgagtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagcc |
47198003 |
T |
|
| Q |
501 |
actttactagctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaaccccttt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
47198002 |
actttactagctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttgtaagaacggctttccctttctcctcgaaaccccttt |
47197903 |
T |
|
| Q |
601 |
caatgagactgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgataatctccacccatatcc |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
47197902 |
caatgagactgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgatactctccacccatatcc |
47197803 |
T |
|
| Q |
701 |
acctttgcttct |
712 |
Q |
| |
|
||||||| |||| |
|
|
| T |
47197802 |
acctttgattct |
47197791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 47185963 - 47185672
Alignment:
| Q |
1 |
accaacattgcatagcctttgcttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47185963 |
accaacattgcatagcctttgcttaagctatctgagtgatctgtgactttcatcccaagcactacgccgattacaacttgcgacacaaacatttgtacac |
47185864 |
T |
|
| Q |
101 |
atgcttccaatagaagtacctttctcccaactttgtccacaaaatagacagacactaaagtgcagaggacattcacacctcctgtgatcactgatgagta |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47185863 |
atgcttccaatagaagtacccttctcccaactttgtccacaaaatatacagacactaaggtgcagaggacattcacacctcctgtgatcactgatgagta |
47185764 |
T |
|
| Q |
201 |
aagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattgctggaagacct |
292 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
47185763 |
aagtgaagcatcattgtgaaatcccaaagtgttgaacaatactggagcatagaacatgattgcattgatgccggtgaattgttggaagacct |
47185672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 410 - 705
Target Start/End: Complemental strand, 47185211 - 47184916
Alignment:
| Q |
410 |
agtagtgacctgcatacagatggcaatgatcaatggaggacgattgtgggacttaacgagatccttgaagggactcttaacctcattagccactttacta |
509 |
Q |
| |
|
|||||| ||||||||||| |||||||| ||||| ||||| |||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
47185211 |
agtagttacctgcatacatatggcaattatcaaaggagggagattgtgggacttaacaagatccttgaaggggctcttgacctcattagccactttacta |
47185112 |
T |
|
| Q |
510 |
gctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagac |
609 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47185111 |
gctctgagtatgtcttcaaactcgggctcaatattttcaacaccacgaatctttcttagaacggctttccctttctcctcgaaacccctttcaatgagac |
47185012 |
T |
|
| Q |
610 |
tgttgggagtatcatccactatgagagaccccattgtaagcataactgctggaatgattgctccagccaatgataatctccacccatatccacctt |
705 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |
|
|
| T |
47185011 |
tgttgggagtatcatccactatgagagaccccactgtaagcataactgctggaatgattgctccggccaatgatattctccacccatatccacctt |
47184916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 284
Target Start/End: Complemental strand, 47212396 - 47212308
Alignment:
| Q |
196 |
gagtaaagtgaagcatcattgtgaaatcccagagtgctgaacaatactggagcatagaacatgattgcattgatgccggtgcattgctg |
284 |
Q |
| |
|
|||||||||| ||||||||| | |||||| | ||| |||||| ||||||||||||||||| || ||||||||||| ||| ||||||| |
|
|
| T |
47212396 |
gagtaaagtgcagcatcattcttaaatcctaaggtgttgaacagaactggagcatagaacattatcgcattgatgccagtgaattgctg |
47212308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University