View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9806_low_18 (Length: 253)

Name: NF9806_low_18
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9806_low_18
NF9806_low_18
[»] chr2 (8 HSPs)
chr2 (17-253)||(11912966-11913206)
chr2 (132-182)||(37182379-37182429)
chr2 (130-183)||(21666041-21666094)
chr2 (128-172)||(11952952-11952996)
chr2 (130-169)||(21190934-21190973)
chr2 (130-169)||(30175538-30175577)
chr2 (130-169)||(45156355-45156394)
chr2 (130-172)||(29694100-29694142)
[»] chr6 (1 HSPs)
chr6 (130-182)||(20611510-20611562)
[»] chr8 (3 HSPs)
chr8 (129-183)||(38009489-38009543)
chr8 (130-158)||(5973369-5973397)
chr8 (130-182)||(7944774-7944826)
[»] chr1 (1 HSPs)
chr1 (130-172)||(39135070-39135112)
[»] scaffold0097 (1 HSPs)
scaffold0097 (130-183)||(38799-38852)
[»] chr7 (5 HSPs)
chr7 (130-183)||(27237765-27237818)
chr7 (130-182)||(7398162-7398214)
chr7 (125-183)||(2611450-2611508)
chr7 (127-172)||(26918028-26918073)
chr7 (127-183)||(23020815-23020871)
[»] chr5 (5 HSPs)
chr5 (130-183)||(11242659-11242712)
chr5 (130-169)||(24395464-24395503)
chr5 (130-183)||(1366852-1366905)
chr5 (127-188)||(36869565-36869625)
chr5 (124-172)||(34425622-34425670)
[»] chr4 (4 HSPs)
chr4 (130-182)||(36118806-36118858)
chr4 (140-183)||(5892817-5892860)
chr4 (130-169)||(24404217-24404256)
chr4 (128-169)||(22315813-22315854)
[»] chr3 (2 HSPs)
chr3 (130-183)||(23641471-23641524)
chr3 (127-172)||(26279260-26279305)


Alignment Details
Target: chr2 (Bit Score: 113; Significance: 3e-57; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 17 - 253
Target Start/End: Original strand, 11912966 - 11913206
Alignment:
Q  17 aggaaagtccaatggagttatgatgatggaaggcgtgatatcaga----aagagaataagaaaatttgnnnnnnnagtggggtagcactactgcgctata 112  Q
    |||||||| |||||||||||||||||||||| ||||| |||||||    |||||||||||||||||||        ||||||||| ||||||| ||||||    
T  11912966 aggaaagtgcaatggagttatgatgatggaatgcgtggtatcagagagaaagagaataagaaaatttgttttttttgtggggtagtactactgtgctata 11913065  T
Q  113 annnnnnnnnngaaactcataccttggggaggcccagctccattgaactctttgcacacctcaaagtccggtcctatgtcccgacactcaataatagttg 212  Q
    |          |||  ||||||||| | |||||||| ||||||||||||||||||||||| |||||||| | ||| ||||||||||||||||||||||||    
T  11913066 atattttttttgaagttcataccttagagaggcccaactccattgaactctttgcacaccccaaagtccagccctgtgtcccgacactcaataatagttg 11913165  T
Q  213 taatacaaattattattcaatttgtgtaacattattctgta 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  11913166 taatacaaattattattcaatttgtgtaacattattctgta 11913206  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 182
Target Start/End: Complemental strand, 37182429 - 37182379
Alignment:
Q  132 taccttggggaggcccagctccattgaactctttgcacacctcaaagtccg 182  Q
    ||||||||||||| ||||||||||||| ||||||||||||| ||| |||||    
T  37182429 taccttggggaggtccagctccattgagctctttgcacaccccaaggtccg 37182379  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 21666041 - 21666094
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    |||||||||||||||||||| |||||||| ||| ||||||||| ||| ||||||    
T  21666041 cataccttggggaggcccagttccattgagctccttgcacaccccaaggtccgg 21666094  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 11952952 - 11952996
Alignment:
Q  128 ctcataccttggggaggcccagctccattgaactctttgcacacc 172  Q
    |||||||||||||||||||||| |||||||| ||| |||||||||    
T  11952952 ctcataccttggggaggcccagttccattgagctccttgcacacc 11952996  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 21190934 - 21190973
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcac 169  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  21190934 cataccttggggaggcccagctccattgagctgtttgcac 21190973  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 30175577 - 30175538
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcac 169  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  30175577 cataccttggggaggcccagctccattgagctgtttgcac 30175538  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 45156355 - 45156394
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcac 169  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  45156355 cataccttggggaggcccagctccattgagctgtttgcac 45156394  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 172
Target Start/End: Complemental strand, 29694142 - 29694100
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacc 172  Q
    ||||||||  ||||||||||||||||||| |||||||||||||    
T  29694142 cataccttaaggaggcccagctccattgagctctttgcacacc 29694100  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 20611562 - 20611510
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccg 182  Q
    |||||||| |||||||||||||||||||| ||||||||||||| ||| |||||    
T  20611562 cataccttagggaggcccagctccattgagctctttgcacaccccaaggtccg 20611510  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 129 - 183
Target Start/End: Original strand, 38009489 - 38009543
Alignment:
Q  129 tcataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    ||||||||||||||||| |||||||||||| |||||| |||||| ||| ||||||    
T  38009489 tcataccttggggaggctcagctccattgagctctttacacaccccaaggtccgg 38009543  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 158
Target Start/End: Original strand, 5973369 - 5973397
Alignment:
Q  130 cataccttggggaggcccagctccattga 158  Q
    |||||||||||||||||||||||||||||    
T  5973369 cataccttggggaggcccagctccattga 5973397  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 7944774 - 7944826
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccg 182  Q
    ||||||||||||| |||||| ||||||||||  |||||||||| ||| |||||    
T  7944774 cataccttggggaagcccagttccattgaacggtttgcacaccccaaggtccg 7944826  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 39135070 - 39135112
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacc 172  Q
    |||||||||||||||||||| |||||||| |||||||||||||    
T  39135070 cataccttggggaggcccagttccattgagctctttgcacacc 39135112  T

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Target: scaffold0097 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 183
Target Start/End: Complemental strand, 38852 - 38799
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    ||||||||||| || ||||| |||||||||||| ||||||||| ||||||||||    
T  38852 cataccttgggaagacccagttccattgaactccttgcacaccccaaagtccgg 38799  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 27237765 - 27237818
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    |||||||  |||||||||| ||||||||| ||||||||||||| ||||||||||    
T  27237765 catacctcagggaggcccaactccattgagctctttgcacaccccaaagtccgg 27237818  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Complemental strand, 7398214 - 7398162
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccg 182  Q
    |||||||||||||||| |||||||||||| ||| ||||||||| ||| |||||    
T  7398214 cataccttggggaggctcagctccattgagctcgttgcacaccccaaggtccg 7398162  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 2611450 - 2611508
Alignment:
Q  125 aaactcataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    |||||||||||| | |||| |||| ||||||||||||||||||| ||| ||| ||||||    
T  2611450 aaactcatacctcgaggagacccaactccattgaactctttgcaaaccccaaggtccgg 2611508  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 26918028 - 26918073
Alignment:
Q  127 actcataccttggggaggcccagctccattgaactctttgcacacc 172  Q
    ||||||||||| | || ||||||||||||||| |||||||||||||    
T  26918028 actcataccttagagatgcccagctccattgagctctttgcacacc 26918073  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 23020815 - 23020871
Alignment:
Q  127 actcataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    ||||||||||||||||| |||  ||||||||| || ||||||||||| || ||||||    
T  23020815 actcataccttggggagacccgtctccattgagctatttgcacacctaaaggtccgg 23020871  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 11242659 - 11242712
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    |||||||||| |||||| || |||||||||||| ||||||||||||| ||||||    
T  11242659 cataccttggagaggccaagttccattgaactccttgcacacctcaaggtccgg 11242712  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 24395503 - 24395464
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcac 169  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  24395503 cataccttggggaggcctagctccattgagctctttgcac 24395464  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 1366852 - 1366905
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    |||| ||||| |||||||||||||||||| |||||||| |||| ||||| ||||    
T  1366852 catatcttggagaggcccagctccattgagctctttgctcaccccaaagcccgg 1366905  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 188
Target Start/End: Original strand, 36869565 - 36869625
Alignment:
Q  127 actcataccttggggaggcccagctccattgaactctttgcacacctcaaagtccggtccta 188  Q
    |||||||||||||| || |||| ||||||||| |||||||||| || |||||||||| ||||    
T  36869565 actcataccttgggaagtcccaactccattgagctctttgcac-ccccaaagtccggcccta 36869625  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 34425670 - 34425622
Alignment:
Q  124 gaaactcataccttggggaggcccagctccattgaactctttgcacacc 172  Q
    ||||||||||||||||| || ||||| || ||||| |||||||||||||    
T  34425670 gaaactcataccttgggaagacccagttcaattgagctctttgcacacc 34425622  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 130 - 182
Target Start/End: Original strand, 36118806 - 36118858
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccg 182  Q
    |||||||||| |||||  ||||||||||| ||||||| |||||||||||||||    
T  36118806 cataccttggagaggcgtagctccattgagctctttgtacacctcaaagtccg 36118858  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 140 - 183
Target Start/End: Complemental strand, 5892860 - 5892817
Alignment:
Q  140 ggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    ||||||| |||||||||||||| |||||||||||||| ||||||    
T  5892860 ggaggcctagctccattgaactgtttgcacacctcaaggtccgg 5892817  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 169
Target Start/End: Complemental strand, 24404256 - 24404217
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcac 169  Q
    ||||||||||||||||||||||||||||| || |||||||    
T  24404256 cataccttggggaggcccagctccattgagctgtttgcac 24404217  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 128 - 169
Target Start/End: Original strand, 22315813 - 22315854
Alignment:
Q  128 ctcataccttggggaggcccagctccattgaactctttgcac 169  Q
    ||||||||||||||||| ||||||||||||| || |||||||    
T  22315813 ctcataccttggggaggtccagctccattgagctgtttgcac 22315854  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 183
Target Start/End: Original strand, 23641471 - 23641524
Alignment:
Q  130 cataccttggggaggcccagctccattgaactctttgcacacctcaaagtccgg 183  Q
    |||||||||||||||||| | |||||||| |  |||||||||| ||||||||||    
T  23641471 cataccttggggaggcccggttccattgagcggtttgcacaccccaaagtccgg 23641524  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 26279305 - 26279260
Alignment:
Q  127 actcataccttggggaggcccagctccattgaactctttgcacacc 172  Q
    ||||||||| |||||||||||||||||| ||| ||| |||||||||    
T  26279305 actcataccctggggaggcccagctccagtgagctccttgcacacc 26279260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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