View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9806_low_2 (Length: 704)

Name: NF9806_low_2
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9806_low_2
NF9806_low_2
[»] chr3 (25 HSPs)
chr3 (372-693)||(47370889-47371209)
chr3 (19-242)||(47371199-47371435)
chr3 (261-371)||(8400876-8400986)
chr3 (261-371)||(35198786-35198896)
chr3 (261-365)||(50823725-50823829)
chr3 (261-365)||(50852031-50852135)
chr3 (261-371)||(7417819-7417929)
chr3 (261-371)||(22855908-22856018)
chr3 (261-368)||(22371730-22371837)
chr3 (261-371)||(52545342-52545452)
chr3 (263-371)||(55468020-55468129)
chr3 (263-371)||(43334057-43334165)
chr3 (263-365)||(34824583-34824685)
chr3 (261-345)||(37330608-37330692)
chr3 (261-345)||(30534903-30534987)
chr3 (252-366)||(29635894-29636009)
chr3 (302-366)||(48077983-48078047)
chr3 (261-363)||(19872484-19872586)
chr3 (261-345)||(37454745-37454829)
chr3 (252-332)||(25910658-25910738)
chr3 (309-360)||(25589253-25589304)
chr3 (264-366)||(42876241-42876343)
chr3 (263-353)||(30203657-30203744)
chr3 (314-355)||(38724459-38724500)
chr3 (252-284)||(358934-358966)
[»] chr7 (16 HSPs)
chr7 (252-371)||(38265229-38265348)
chr7 (252-371)||(35109712-35109831)
chr7 (261-371)||(21577099-21577209)
chr7 (261-371)||(37095211-37095321)
chr7 (261-371)||(34721855-34721965)
chr7 (263-366)||(38405157-38405260)
chr7 (263-371)||(16059356-16059464)
chr7 (264-371)||(41151193-41151301)
chr7 (261-371)||(245265-245375)
chr7 (265-365)||(11216796-11216896)
chr7 (264-371)||(12472142-12472249)
chr7 (252-371)||(45278473-45278592)
chr7 (263-366)||(18116947-18117050)
chr7 (261-360)||(28407540-28407635)
chr7 (263-371)||(48176420-48176529)
chr7 (655-689)||(28036608-28036642)
[»] chr8 (21 HSPs)
chr8 (252-366)||(11404027-11404141)
chr8 (261-362)||(22711539-22711640)
chr8 (263-371)||(17095571-17095679)
chr8 (252-371)||(19723332-19723451)
chr8 (261-366)||(32296640-32296745)
chr8 (263-371)||(28739564-28739672)
chr8 (252-371)||(29767209-29767326)
chr8 (252-359)||(41553318-41553425)
chr8 (261-371)||(4840161-4840271)
chr8 (261-359)||(36261679-36261777)
chr8 (264-359)||(43288105-43288200)
chr8 (300-366)||(24475036-24475102)
chr8 (263-346)||(11909426-11909509)
chr8 (280-363)||(21355004-21355087)
chr8 (261-363)||(30682868-30682969)
chr8 (261-366)||(11610306-11610411)
chr8 (316-371)||(27881044-27881099)
chr8 (316-371)||(28021225-28021280)
chr8 (261-320)||(27879561-27879620)
chr8 (261-320)||(28019742-28019801)
chr8 (532-591)||(43269837-43269896)
[»] chr6 (10 HSPs)
chr6 (261-371)||(35163751-35163861)
chr6 (252-372)||(20685345-20685465)
chr6 (261-371)||(19686828-19686938)
chr6 (261-366)||(17948706-17948811)
chr6 (261-371)||(2711741-2711845)
chr6 (263-365)||(15070152-15070254)
chr6 (269-371)||(14505533-14505634)
chr6 (289-366)||(24336641-24336718)
chr6 (532-590)||(34575856-34575914)
chr6 (338-371)||(14496373-14496406)
[»] chr5 (10 HSPs)
chr5 (252-366)||(17064349-17064463)
chr5 (263-371)||(20983006-20983114)
chr5 (261-371)||(37976567-37976681)
chr5 (261-351)||(41910865-41910955)
chr5 (265-359)||(31673863-31673956)
chr5 (261-365)||(5009418-5009521)
chr5 (300-359)||(18303350-18303409)
chr5 (317-374)||(32326560-32326617)
chr5 (264-355)||(39162859-39162947)
chr5 (317-350)||(21968782-21968815)
[»] chr1 (16 HSPs)
chr1 (261-371)||(45324027-45324137)
chr1 (252-371)||(30370052-30370171)
chr1 (253-366)||(22024129-22024242)
chr1 (263-371)||(30054445-30054553)
chr1 (263-371)||(21090136-21090244)
chr1 (261-359)||(4573412-4573510)
chr1 (261-363)||(14498080-14498182)
chr1 (252-365)||(12025208-12025321)
chr1 (260-365)||(30850840-30850945)
chr1 (261-366)||(20014484-20014589)
chr1 (252-366)||(33762532-33762646)
chr1 (252-371)||(33763246-33763365)
chr1 (269-348)||(35371754-35371833)
chr1 (263-333)||(35618034-35618104)
chr1 (252-320)||(17015192-17015260)
chr1 (263-362)||(44438553-44438652)
[»] chr4 (25 HSPs)
chr4 (263-371)||(46494401-46494509)
chr4 (261-371)||(51713966-51714076)
chr4 (261-366)||(7173586-7173691)
chr4 (263-366)||(51066519-51066622)
chr4 (261-363)||(29576444-29576546)
chr4 (261-371)||(36192562-36192672)
chr4 (261-366)||(30970385-30970490)
chr4 (252-364)||(55231715-55231827)
chr4 (290-371)||(8740469-8740550)
chr4 (264-371)||(32139185-32139292)
chr4 (261-371)||(50905769-50905879)
chr4 (261-354)||(676766-676859)
chr4 (261-371)||(39863779-39863889)
chr4 (261-371)||(47626994-47627104)
chr4 (252-363)||(2570230-2570341)
chr4 (261-344)||(22304092-22304175)
chr4 (302-366)||(41523423-41523487)
chr4 (289-365)||(22423403-22423479)
chr4 (262-354)||(51279035-51279127)
chr4 (252-359)||(4080544-4080651)
chr4 (312-371)||(50399694-50399753)
chr4 (263-366)||(2294719-2294816)
chr4 (318-357)||(40012548-40012587)
chr4 (376-413)||(4635217-4635254)
chr4 (268-313)||(28202598-28202643)
[»] chr2 (26 HSPs)
chr2 (261-365)||(17136414-17136518)
chr2 (261-371)||(45136971-45137081)
chr2 (261-362)||(2754052-2754153)
chr2 (252-371)||(21637918-21638037)
chr2 (261-371)||(25987662-25987773)
chr2 (261-371)||(36380133-36380243)
chr2 (261-363)||(36836330-36836432)
chr2 (261-371)||(40156061-40156171)
chr2 (261-365)||(44650420-44650524)
chr2 (269-371)||(6672802-6672904)
chr2 (261-371)||(10745233-10745343)
chr2 (262-366)||(30372682-30372786)
chr2 (261-366)||(558440-558545)
chr2 (261-366)||(2357077-2357181)
chr2 (261-366)||(26690180-26690285)
chr2 (261-366)||(33066616-33066721)
chr2 (252-366)||(5039446-5039560)
chr2 (261-366)||(3200907-3201012)
chr2 (261-359)||(13047157-13047252)
chr2 (261-359)||(21487181-21487280)
chr2 (261-371)||(7860147-7860257)
chr2 (263-358)||(4553561-4553657)
chr2 (261-309)||(2098827-2098875)
chr2 (322-366)||(20961507-20961551)
chr2 (314-354)||(30477240-30477280)
chr2 (314-371)||(34362673-34362730)
[»] scaffold0021 (1 HSPs)
scaffold0021 (269-371)||(107700-107802)
[»] scaffold0691 (1 HSPs)
scaffold0691 (302-366)||(7011-7075)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 372 - 693
Target Start/End: Complemental strand, 47371209 - 47370889
Alignment:
Q  372 atgttataaacttttaattcaacggtcaaatttaaaaaatatttgtcaaataaaatgttatgcannnnnnnngttgaatgccagtaatcttaacaaatct 471  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||| ||||||||||||||||    
T  47371209 atgttataaacttttaattcaacggtcaaatttaaaaaatatttgtcaaataaaatgttatgc-gtttttttgttgaatgccattaatcttaacaaatct 47371111  T
Q  472 taatagcatattaaatgattttactttttaataaaattccgtagggacgatgcgtatattataaactttcaatccaacggtggattttataaaatttgta 571  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47371110 taatagcatattaaatgattttactttttaataaaattccgtagggacgatgcgtatattataaattttcaatccaacggtggattttataaaatttgta 47371011  T
Q  572 ttcgttaaaatgttattgagcagtgtaacattgcgtcaatgtaatttgattcttcatgtatagataatttgaaatacatactcatatataaatatatatg 671  Q
    |||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47371010 ttcgttaaaatgttattgtgcagtgtaacattgcaccaatgtaatttgattcttcatgtatagataatttgaaatacgtactcatatataaatatatatg 47370911  T
Q  672 gttaaatatgtttttgatgtcc 693  Q
    ||||||||||||||||||||||    
T  47370910 gttaaatatgtttttgatgtcc 47370889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 47371435 - 47371199
Alignment:
Q  19 ctaatatgcgatgtcgaacaagatcagcatcatttgttgaagtttaaaaa-------------ttttttaatctctctctgcataaattaaaatcatttt 105  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||    
T  47371435 ctaatatgtgatgtcgaacaagatcagcatcatttgttgaagtttaaaaaaagttcgttgttattttttaatctctctctgcataaattaaaatcatttt 47371336  T
Q  106 gtacattgttgagttgcatcaagagtaacatcataaaataaaagattttaaaacgttaattttgatagatctcaacactatatcaaataaatttagattt 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47371335 gtacattgttgagttgcatcaagagtaacatcataaaataaaagattttaaaacgttaagtttgatagatctcaacactatatcaaataaatttagattt 47371236  T
Q  206 atttcaaatttgtacatattatcaacatgttataaac 242  Q
    |||||||||||||||||||||||||||||||||||||    
T  47371235 atttcaaatttgtacatattatcaacatgttataaac 47371199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 8400986 - 8400876
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  8400986 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 8400887  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  8400886 cactagcgggg 8400876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 35198896 - 35198786
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35198896 aattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaagg 35198797  T
Q  361 cactagagggg 371  Q
    || ||| ||||    
T  35198796 cattagtgggg 35198786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 50823829 - 50823725
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50823829 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 50823730  T
Q  361 cacta 365  Q
    |||||    
T  50823729 cacta 50823725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 261 - 365
Target Start/End: Original strand, 50852031 - 50852135
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  50852031 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 50852130  T
Q  361 cacta 365  Q
    |||||    
T  50852131 cacta 50852135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 7417929 - 7417819
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| |||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7417929 aattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 7417830  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  7417829 cactagcgggg 7417819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 22856018 - 22855908
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||||||||||||| ||| | |||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||     
T  22856018 aattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaaga 22855919  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  22855918 cactagcgggg 22855908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 261 - 368
Target Start/End: Original strand, 22371730 - 22371837
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| |||||| |||||| | |||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||    
T  22371730 aattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaagg 22371829  T
Q  361 cactagag 368  Q
    ||| ||||    
T  22371830 cacaagag 22371837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 52545452 - 52545342
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||  ||||||||| ||||||||||||||||||||  |||||    
T  52545452 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaagg 52545353  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  52545352 cactagcgggg 52545342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 55468129 - 55468020
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcggg-ctcaaagagcacttacaaaggtatttacatttacctccctccaaaggc 361  Q
    |||||||||||||||||||||| ||||||||| |||   |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  362 actagagggg 371  Q
    | ||| ||||    
T  55468029 attagtgggg 55468020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 43334057 - 43334165
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||| | ||||||||| ||| | |||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||| ||    
T  43334057 ttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctccctcccaagaca 43334156  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  43334157 ctagcgggg 43334165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 34824685 - 34824583
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| ||  | |||||||||||| ||||||||||||||||||| || |||||||||||||||| ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  363 cta 365  Q
    |||    
T  34824585 cta 34824583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 37330608 - 37330692
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacattt 345  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||| ||||||||||||||||||||||| ||||||||    
T  37330608 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 30534903 - 30534987
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacattt 345  Q
    |||||||||||||||||||||| | ||||||||| ||| | |||| |||||||||||||||||||||||||||||| ||||||||    
T  30534903 aattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 29636009 - 29635894
Alignment:
Q  252 ggttacattaattttagggtgaggggat-ggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctc 350  Q
    |||||||  |||||||| ||||||| || ||||| ||| ||||| ||| | ||||| |||||||| |||||||||||||||||||| |||||||||||||    
T  29636009 ggttacagaaattttagcgtgagggaattggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctc 29635910  T
Q  351 cctccaaaggcactag 366  Q
    ||| ||||||||||||    
T  29635909 ccttcaaaggcactag 29635894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 48077983 - 48078047
Alignment:
Q  302 aagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactag 366  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||    
T  48077983 aagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactag 48078047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 19872484 - 19872586
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||| |||||||||||||| |||||||||  || | |||||||||||  |||||||| ||||||||||||| |||  ||||||| ||||||||||    
T  19872484 aattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcctccaaagg 19872583  T
Q  361 cac 363  Q
    |||    
T  19872584 cac 19872586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 261 - 345
Target Start/End: Original strand, 37454745 - 37454829
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacattt 345  Q
    |||||||||||||||||||||||| ||| || || | | | ||||||||||||||||||||||||||||||||||| ||| ||||    
T  37454745 aattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 252 - 332
Target Start/End: Original strand, 25910658 - 25910738
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaa 332  Q
    |||||||  ||||||||||||||||||||||||  |||||||| ||| | |||| |||||| |||||||||||||||||||    
T  25910658 ggttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaa 25910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 25589304 - 25589253
Alignment:
Q  309 tcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||||||    
T  25589304 tcggactcaaagagcacttactaaggtatttacatttacctccttccaaagg 25589253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 264 - 366
Target Start/End: Complemental strand, 42876343 - 42876241
Alignment:
Q  264 tttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcac 363  Q
    ||||||||||| ||||||||| | |||||||   | | ||||| |||  | |||||||||||||||||||||| |||||||||||||| || |||| |||    
T  42876343 tttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctccatctaaagacac 42876244  T
Q  364 tag 366  Q
    |||    
T  42876243 tag 42876241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 263 - 353
Target Start/End: Original strand, 30203657 - 30203744
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccct 353  Q
    |||||| ||||||||||||||| ||||| |||  || |||| ||||||| ||||||||| || |||||||||  |||||||||||||||||    
T  30203657 ttttagagtgaggggatggtgccccagttcaagacaggaaa-accttcgagctcaaagaacatttacaaagg--tttacatttacctccct 30203744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 355
Target Start/End: Original strand, 38724459 - 38724500
Alignment:
Q  314 ctcaaagagcacttacaaaggtatttacatttacctccctcc 355  Q
    |||||| |||||||||||||| |||||| |||||||||||||    
T  38724459 ctcaaatagcacttacaaagggatttacgtttacctccctcc 38724500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 358934 - 358966
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgc 284  Q
    |||||||| ||||||||||||||||||||||||    
T  358934 ggttacataaattttagggtgaggggatggtgc 358966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 38265229 - 38265348
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||| |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  38265229 ggttacataaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 38265328  T
Q  352 ctccaaaggcactagagggg 371  Q
    ||||||||||||||| ||||    
T  38265329 ctccaaaggcactagcgggg 38265348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 35109831 - 35109712
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  35109831 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 35109732  T
Q  352 ctccaaaggcactagagggg 371  Q
    ||||||||||||||| ||||    
T  35109731 ctccaaaggcactagtgggg 35109712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 21577099 - 21577209
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  21577099 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccctccaaagg 21577198  T
Q  361 cactagagggg 371  Q
    || ||| ||||    
T  21577199 cattagtgggg 21577209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 37095211 - 37095321
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||     
T  37095211 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaga 37095310  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  37095311 cactagcgggg 37095321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 34721965 - 34721855
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| | ||||||| ||| | ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  34721965 aattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 34721866  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  34721865 cactagcgggg 34721855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 38405157 - 38405260
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| ||| | |||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||    
T  38405157 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccctccaaaggca 38405256  T
Q  363 ctag 366  Q
    ||||    
T  38405257 ctag 38405260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 16059356 - 16059464
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| | | | |||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  16059456 ctagcgggg 16059464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 41151301 - 41151193
Alignment:
Q  264 tttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttac-aaaggtatttacatttacctccctccaaaggca 362  Q
    ||||||||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||    
T  41151301 tttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctccctccaaagaca 41151202  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  41151201 ctagcgggg 41151193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 245265 - 245375
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||  |||||||| || |||||||||||||||||||| ||    
T  245265 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccctccaaggg 245364  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  245365 cactagcgggg 245375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 265 - 365
Target Start/End: Complemental strand, 11216896 - 11216796
Alignment:
Q  265 ttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 364  Q
    |||||||||||| ||| ||| | ||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  365 a 365  Q
    |    
T  11216796 a 11216796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 12472249 - 12472142
Alignment:
Q  264 tttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcac 363  Q
    ||||||||||||||||||| | |||||||||  || | |||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  12472249 tttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctccctccaaaggcac 12472150  T
Q  364 tagagggg 371  Q
    ||| ||||    
T  12472149 tagtgggg 12472142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 45278592 - 45278473
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||||||||||||| ||| | ||||| |||||| | ||||||||||||||||| || |||||||||| |||    
T  45278592 ggttacaaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcc 45278493  T
Q  352 ctccaaaggcactagagggg 371  Q
    || |||||||||||| ||||    
T  45278492 cttcaaaggcactagcgggg 45278473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 18116947 - 18117050
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| ||| | |||| |||||  |||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  363 ctag 366  Q
    ||||    
T  18117047 ctag 18117050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 28407635 - 28407540
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||| ||||| || |    ||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  28407635 aattttagggtgaggggatggtgccccaatccaaggctt----gaccttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaagg 28407540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 48176529 - 48176420
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagc-atgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggc 361  Q
    |||||||||||||||||||||| ||||||||| |  | | || |||||| |||||||| | |||||||||| |||||||||||||||||| |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  362 actagagggg 371  Q
    ||||| ||||    
T  48176429 actagcgggg 48176420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 655 - 689
Target Start/End: Complemental strand, 28036642 - 28036608
Alignment:
Q  655 atatataaatatatatggttaaatatgtttttgat 689  Q
    ||||||| |||||||||||||||||||||||||||    
T  28036642 atatatatatatatatggttaaatatgtttttgat 28036608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 87; Significance: 2e-41; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 11404141 - 11404027
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11404141 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 11404042  T
Q  352 ctccaaaggcactag 366  Q
    |||||||| ||||||    
T  11404041 ctccaaagacactag 11404027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 261 - 362
Target Start/End: Complemental strand, 22711640 - 22711539
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||| |||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22711640 aattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 22711541  T
Q  361 ca 362  Q
    ||    
T  22711540 ca 22711539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 17095679 - 17095571
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  17095579 ctagcgggg 17095571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 19723451 - 19723332
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| ||||||||| ||| | |||| ||| |||||||||||||||||||||||||| ||||||||||||||    
T  19723451 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctcc 19723352  T
Q  352 ctccaaaggcactagagggg 371  Q
    ||||||||||||||| ||||    
T  19723351 ctccaaaggcactagcgggg 19723332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 32296640 - 32296745
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||| ||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  32296640 aattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaagg 32296739  T
Q  361 cactag 366  Q
    ||||||    
T  32296740 cactag 32296745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 28739564 - 28739672
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    ||||||||||||||||||||||| |||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  28739564 ttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcctccaaaggca 28739663  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  28739664 ctagtgggg 28739672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 29767326 - 29767209
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||||||| |||||||||||||| ||  ||||||||||    
T  29767326 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcc 29767229  T
Q  352 ctccaaaggcactagagggg 371  Q
    || |||||||||||| ||||    
T  29767228 cttcaaaggcactagcgggg 29767209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 252 - 359
Target Start/End: Complemental strand, 41553425 - 41553318
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  ||||||||||||||||||||||||||||||| || ||| | |||||||||| ||||||||| ||||||||||||||||||||||||| | |    
T  41553425 ggttacaaaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttc 41553326  T
Q  352 ctccaaag 359  Q
    ||||||||    
T  41553325 ctccaaag 41553318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 4840271 - 4840161
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| | ||||||| ||| | |||||||| || |||||||||||||||||| |||| | |||||||||||||||||||||    
T  4840271 aattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccctccaaagg 4840172  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  4840171 cactagcgggg 4840161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 36261777 - 36261679
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    ||||||| |||||||||||||||| ||||| ||| ||| | |||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36261777 aattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 359
Target Start/End: Complemental strand, 43288200 - 43288105
Alignment:
Q  264 tttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    ||||||||||||||||||||||||||||||| ||| | ||||||||||| |||||| | || ||||||||||| ||||||||||||||||||||||    
T  43288200 tttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaaag 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 300 - 366
Target Start/End: Original strand, 24475036 - 24475102
Alignment:
Q  300 gaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactag 366  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  24475036 gaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactag 24475102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 11909426 - 11909509
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacattta 346  Q
    |||||||||||||||||||||| ||||||||| ||| | |||||||||| |||||||||||||||| |||||||||||||||||    
T  11909426 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 280 - 363
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  280 ggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcac 363  Q
    ||||| ||||||||| ||| | |||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 30682969 - 30682868
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||| |||||||||||||||| ||||||||| ||| | |||| ||||||||||||||| |||||||||| ||||||||||||| ||| |||||||||    
T  30682969 aattttaaggtgaggggatggtgc-ccagtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaagg 30682871  T
Q  361 cac 363  Q
    |||    
T  30682870 cac 30682868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 11610411 - 11610306
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| |||||||||   | | |||||||||||||| ||| ||||||||||||| |||||| ||||||||  |||||||||    
T  11610411 aattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttctccaaagg 11610312  T
Q  361 cactag 366  Q
    ||||||    
T  11610311 cactag 11610306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 27881044 - 27881099
Alignment:
Q  316 caaagagcacttacaaaggtatttacatttacctccctccaaaggcactagagggg 371  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcgggg 27881099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 28021225 - 28021280
Alignment:
Q  316 caaagagcacttacaaaggtatttacatttacctccctccaaaggcactagagggg 371  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcgggg 28021280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 27879561 - 27879620
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaag 320  Q
    |||||||||||||||||||||||| ||||||||| | | | |||| |||| |||||||||    
T  27879561 aattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 28019742 - 28019801
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaag 320  Q
    |||||||||||||||||||||||| ||||||||| | | | |||| |||| |||||||||    
T  28019742 aattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 532 - 591
Target Start/End: Original strand, 43269837 - 43269896
Alignment:
Q  532 ataaactttcaatccaacggtggattttataaaatttgtattcgttaaaatgttattgag 591  Q
    |||||||||||||| ||  || ||||||| ||||||||||||||||||||  ||||||||    
T  43269837 ataaactttcaatctaatagtagattttacaaaatttgtattcgttaaaacattattgag 43269896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 35163751 - 35163861
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35163751 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 35163850  T
Q  361 cactagagggg 371  Q
    || ||| ||||    
T  35163851 cattagtgggg 35163861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 252 - 372
Target Start/End: Complemental strand, 20685465 - 20685345
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  ||||||||||||| |||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20685465 ggttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 20685366  T
Q  352 ctccaaaggcactagagggga 372  Q
    ||||||||||||||| |||||    
T  20685365 ctccaaaggcactagcgggga 20685345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 19686828 - 19686938
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||| ||| |||||| || | | |||||| |||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  19686828 aattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctacaaagg 19686927  T
Q  361 cactagagggg 371  Q
    |||||||||||    
T  19686928 cactagagggg 19686938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 17948811 - 17948706
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||| |||||||||||||||  |||||||||  || | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||     
T  17948811 aattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaaaga 17948712  T
Q  361 cactag 366  Q
    ||||||    
T  17948711 cactag 17948706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 2711741 - 2711845
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||      ||||| ||| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  2711741 aattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaaag 2711834  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  2711835 cactagtgggg 2711845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 263 - 365
Target Start/End: Complemental strand, 15070254 - 15070152
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||| ||||||||||||||||| |||||| || ||| | ||||||||||||||||| || |||||||||| ||| ||| |||||||||||||||||||||    
T  15070254 tttttgggtgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggca 15070155  T
Q  363 cta 365  Q
    |||    
T  15070154 cta 15070152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 14505533 - 14505634
Alignment:
Q  269 ggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagag 368  Q
    |||||||||||||||| ||||||||| ||| | |||| ||||| || ||||||  | ||||||||||| ||||||||||||||||||||| ||||||| |    
T  14505533 ggtgaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccctccaaaagcactagcg 14505631  T
Q  369 ggg 371  Q
    |||    
T  14505632 ggg 14505634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 289 - 366
Target Start/End: Complemental strand, 24336718 - 24336641
Alignment:
Q  289 gtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactag 366  Q
    |||||| ||| | |||| |||| |||||||| | |||||||||| ||||||||||||||||||||||||||| |||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactag 24336641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 532 - 590
Target Start/End: Original strand, 34575856 - 34575914
Alignment:
Q  532 ataaactttcaatccaacggtggattttataaaatttgtattcgttaaaatgttattga 590  Q
    ||||| |||||||||||| ||| |||||||||||||| |||| ||||||| ||||||||    
T  34575856 ataaattttcaatccaactgtgaattttataaaatttatattagttaaaacgttattga 34575914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 338 - 371
Target Start/End: Complemental strand, 14496406 - 14496373
Alignment:
Q  338 ttacatttacctccctccaaaggcactagagggg 371  Q
    ||||||||||||||||||||||||||||| ||||    
T  14496406 ttacatttacctccctccaaaggcactagtgggg 14496373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 87; Significance: 2e-41; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 17064463 - 17064349
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| ||||||||| ||| | |||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17064463 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctcc 17064364  T
Q  352 ctccaaaggcactag 366  Q
    |||||||||||||||    
T  17064363 ctccaaaggcactag 17064349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 20983006 - 20983114
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| ||| | ||||| ||||||||||||||||||||||||| ||| || |||||||||| |||| ||||||    
T  20983006 ttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccgaaggca 20983105  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  20983106 ctagcgggg 20983114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 37976681 - 37976567
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttac----atttacctccctcca 356  Q
    |||||||||||||||||||||||| ||||| ||| ||| |||| ||||||||||||||| |||||||||||||||||||||    |||||||||||| ||    
T  37976681 aattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctcccttca 37976582  T
Q  357 aaggcactagagggg 371  Q
    || ||||||| ||||    
T  37976581 aatgcactagcgggg 37976567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 261 - 351
Target Start/End: Complemental strand, 41910955 - 41910865
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    ||||||| |||||||||||||||| ||||| ||| |||   ||||| |||||||||||||| ||||||||||| || ||||||||||||||    
T  41910955 aattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctcc 41910865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 31673956 - 31673863
Alignment:
Q  265 ttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    ||||||||||||| |||||| ||||||||| ||| | | |||||| |||||||||| |||||| |||||| |||||||||| |||| ||||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt-caaagggatttacattttcctctctccaaag 31673863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 261 - 365
Target Start/End: Original strand, 5009418 - 5009521
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||| ||||||| ||| ||||| ||| ||||| |||||||||||  ||||||| || |||||||  |||||||||||| ||| ||||||||     
T  5009418 aattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaaga 5009516  T
Q  361 cacta 365  Q
    |||||    
T  5009517 cacta 5009521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 300 - 359
Target Start/End: Original strand, 18303350 - 18303409
Alignment:
Q  300 gaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    |||||||||||||| | |||||||||||||||| |||||||| ||||| | |||||||||    
T  18303350 gaaagaccttcgggtttaaagagcacttacaaaagtatttacgtttactttcctccaaag 18303409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 317 - 374
Target Start/End: Complemental strand, 32326617 - 32326560
Alignment:
Q  317 aaagagcacttacaaaggtatttacatttacctccctccaaaggcactagaggggatg 374  Q
    |||||||| ||||||||| |||||  ||||| ||||||||| ||||||||||||||||    
T  32326617 aaagagcagttacaaaggaatttatttttacttccctccaatggcactagaggggatg 32326560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 264 - 355
Target Start/End: Original strand, 39162859 - 39162947
Alignment:
Q  264 tttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttaca-aaggtatttacatttacctccctcc 355  Q
    |||||||||| |||| ||||| ||||||||| |||   ||||||    ||||||||||||| ||||| ||||||||||||||||||| |||||    
T  39162859 tttagggtgatgggacggtgccccagtccaaggcacagaagacc----ggctcaaagagcatttacacaaggtatttacatttaccttcctcc 39162947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 317 - 350
Target Start/End: Complemental strand, 21968815 - 21968782
Alignment:
Q  317 aaagagcacttacaaaggtatttacatttacctc 350  Q
    |||||||||||||||| |||||||||||||||||    
T  21968815 aaagagcacttacaaaagtatttacatttacctc 21968782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 45324137 - 45324027
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |    
T  45324137 aattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctccctccaaaag 45324038  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  45324037 cactagcgggg 45324027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 30370052 - 30370171
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||| ||||||| |||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  30370052 ggttacatgaattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 30370151  T
Q  352 ctccaaaggcactagagggg 371  Q
    |||||||| |||||| ||||    
T  30370152 ctccaaagacactagtgggg 30370171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 253 - 366
Target Start/End: Complemental strand, 22024242 - 22024129
Alignment:
Q  253 gttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 352  Q
    ||||||| |||||||||||||||||||||||| ||||||||| |||   ||||||||||||||||||||||||||||||||||| ||||||||||||||     
T  22024242 gttacataaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcca 22024143  T
Q  353 tccaaaggcactag 366  Q
    ||||||||||||||    
T  22024142 tccaaaggcactag 22024129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 30054445 - 30054553
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  30054545 ctagcgggg 30054553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 21090244 - 21090136
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||| ||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| ||||    
T  21090244 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggca 21090145  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  21090144 ctagcgggg 21090136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 4573510 - 4573412
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    ||||||||||||||||||| ||||  ||||||||| || | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4573510 aattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaag 4573412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 14498080 - 14498182
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||||||||||| || ||||||||| ||| | |||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||    
T  14498080 aattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 14498179  T
Q  361 cac 363  Q
    |||    
T  14498180 cac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 252 - 365
Target Start/End: Complemental strand, 12025321 - 12025208
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  ||||||||||||||||| |||||| ||||||||| ||| | |||||||||||||||||| || ||||||||||||| |||||||||||| |    
T  12025321 ggttacaaaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttc 12025222  T
Q  352 ctccaaaggcacta 365  Q
    ||||||||||||||    
T  12025221 ctccaaaggcacta 12025208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 260 - 365
Target Start/End: Original strand, 30850840 - 30850945
Alignment:
Q  260 taattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    ||||||||||||||||||||||||| |||||||||  || |||||||||||||| |||||||||||||||||||| | ||| ||||||||||||||||||    
T  30850840 taattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaag 30850939  T
Q  360 gcacta 365  Q
     |||||    
T  30850940 acacta 30850945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 20014589 - 20014484
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||||||||||||||  |||||||| ||| | ||||||||| ||||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  20014589 aattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccctccaaagg 20014490  T
Q  361 cactag 366  Q
     |||||    
T  20014489 tactag 20014484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 366
Target Start/End: Original strand, 33762532 - 33762646
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||| ||| ||||||||| ||| | || || |||||||||||| | |||||||||||||| |||||||| |||||    
T  33762532 ggttacaaaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33762631  T
Q  352 ctccaaaggcactag 366  Q
    ||| |||||||||||    
T  33762632 ctctaaaggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 252 - 371
Target Start/End: Original strand, 33763246 - 33763365
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||| ||| ||||| ||| ||| | || || |||||||||||| | |||||||||||||| |||||||| |||||    
T  33763246 ggttacagaaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33763345  T
Q  352 ctccaaaggcactagagggg 371  Q
    ||| ||||||||||| ||||    
T  33763346 ctctaaaggcactagcgggg 33763365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 269 - 348
Target Start/End: Original strand, 35371754 - 35371833
Alignment:
Q  269 ggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacc 348  Q
    |||||||||||||||| ||||||||| ||| | |||| |||||||||||||||||||||||||||||| |||||||||||    
T  35371754 ggtgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 263 - 333
Target Start/End: Complemental strand, 35618104 - 35618034
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaag 333  Q
    |||||||||||||||||||| | ||||||||||||| | ||||||||||||||||||||||||||||||||    
T  35618104 ttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaag 35618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 252 - 320
Target Start/End: Complemental strand, 17015260 - 17015192
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaag 320  Q
    |||||||| ||||||||| |||||||||||||| ||||||||||||| | |||||||||||||||||||    
T  17015260 ggttacataaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 263 - 362
Target Start/End: Original strand, 44438553 - 44438652
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    ||||| || ||||||||||| | ||||| ||| ||| | ||||||||||   | ||||| |||||||||| ||| |||||||||||||||||||||||||    
T  44438553 ttttaaggcgaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggca 44438652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 263 - 371
Target Start/End: Original strand, 46494401 - 46494509
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| | | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46494401 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 46494500  T
Q  363 ctagagggg 371  Q
    |||| ||||    
T  46494501 ctagtgggg 46494509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 51713966 - 51714076
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||| ||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  51713966 aattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctcccttcaaagg 51714065  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  51714066 cactagtgggg 51714076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 7173586 - 7173691
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  7173586 aattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaagg 7173685  T
Q  361 cactag 366  Q
    ||||||    
T  7173686 cactag 7173691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 263 - 366
Target Start/End: Complemental strand, 51066622 - 51066519
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  51066622 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccctccaaaggca 51066523  T
Q  363 ctag 366  Q
    ||||    
T  51066522 ctag 51066519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 29576546 - 29576444
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||||||| |||||| ||| ||||| ||| | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29576546 aattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccctccaaagg 29576447  T
Q  361 cac 363  Q
    |||    
T  29576446 cac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 36192672 - 36192562
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| | | | ||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  36192672 aattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaagg 36192573  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  36192572 cactagtgggg 36192562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 30970385 - 30970490
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| |||||| || | | | |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30970385 aattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaagg 30970484  T
Q  361 cactag 366  Q
    ||||||    
T  30970485 cactag 30970490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 252 - 364
Target Start/End: Complemental strand, 55231827 - 55231715
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| ||||||||| ||| | ||||| ||| ||||||||||||||||||||| ||||||||||||||||||    
T  55231827 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcc 55231728  T
Q  352 ctccaaaggcact 364  Q
    || ||||||||||    
T  55231727 cttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 290 - 371
Target Start/End: Complemental strand, 8740550 - 8740469
Alignment:
Q  290 tccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagagggg 371  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcgggg 8740469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 264 - 371
Target Start/End: Complemental strand, 32139292 - 32139185
Alignment:
Q  264 tttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcac 363  Q
    |||||||||| |||||||||| ||||||||| |||   ||||||||| |||||||||| |||||||||||||| |||||||||||||||||||||| |||    
T  32139292 tttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaagacac 32139193  T
Q  364 tagagggg 371  Q
    ||| ||||    
T  32139192 tagcgggg 32139185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 50905879 - 50905769
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||  ||||||||| ||||| ||| ||||| ||||||||||| |||||||||||| ||||||| || ||||||||||||| |||||||||    
T  50905879 aattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctctccaaagg 50905780  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  50905779 cactagcgggg 50905769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 354
Target Start/End: Complemental strand, 676859 - 676766
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctc 354  Q
    ||||||| ||| ||||||||||| | |||||||| ||| | ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  676859 aattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccctc 676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 39863779 - 39863889
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||||||||| |||   |||||||| | |   |||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||    
T  39863779 aattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaagg 39863878  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  39863879 cactagcgggg 39863889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 47626994 - 47627104
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||||| ||||||| |||||||||| ||| | |||||||||| | |||||||| | ||| | |||||||||||||||||||||| ||||||    
T  47626994 aattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctcccttcaaagg 47627093  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  47627094 cactagtgggg 47627104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 252 - 363
Target Start/End: Complemental strand, 2570341 - 2570230
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| ||||||||| ||| | |||| |||||| |||||||| || ||| || | |||||| ||||||||||    
T  2570341 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctcc 2570242  T
Q  352 ctccaaaggcac 363  Q
    ||||||||||||    
T  2570241 ctccaaaggcac 2570230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 22304092 - 22304175
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatt 344  Q
    |||||||||||||| ||||||||| ||||||||| | | | ||||||||||||||||||||||||||||||||||||| |||||    
T  22304092 aattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtattgacatt 22304175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 302 - 366
Target Start/End: Complemental strand, 41523487 - 41523423
Alignment:
Q  302 aagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactag 366  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  41523487 aagaccttcgagctcaaagagcacttataaaggtatttacatttacctccctccaaagacactag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 22423479 - 22423403
Alignment:
Q  289 gtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcacta 365  Q
    |||||||||| | ||||||||||  | |||||| |||||||||| ||||||||||||||||||||||||||| ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtacta 22423403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 262 - 354
Target Start/End: Original strand, 51279035 - 51279127
Alignment:
Q  262 attttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctc 354  Q
    |||||||||||||||||||||||   | ||||| |   | |||||||| |||||||||||||||||||||| ||||||||||| |||||||||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctc 51279127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 252 - 359
Target Start/End: Original strand, 4080544 - 4080651
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  ||||||| || ||||||||||||||||| |||||  ||   ||||| ||| | ||||||||||| ||||||| ||| ||||||||||||||    
T  4080544 ggttacaaaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctcc 4080643  T
Q  352 ctccaaag 359  Q
    ||||||||    
T  4080644 ctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 312 - 371
Target Start/End: Original strand, 50399694 - 50399753
Alignment:
Q  312 ggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagagggg 371  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||  ||||||| ||||    
T  50399694 ggctcaaagaacacttacaaaggtatttacatttaccttcctccaagagcactagcgggg 50399753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 366
Target Start/End: Original strand, 2294719 - 2294816
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggca 362  Q
    |||||||||||||||||||||| |||||| || |||   ||||| ||||||||||| || |||||      ||| |||||||||||| ||||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacactt------gtaattacatttaccttcctccaaaggca 2294812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 40012587 - 40012548
Alignment:
Q  318 aagagcacttacaaaggtatttacatttacctccctccaa 357  Q
    ||||||||| ||||||| ||||||||||||||||||||||    
T  40012587 aagagcactcacaaagggatttacatttacctccctccaa 40012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 376 - 413
Target Start/End: Original strand, 4635217 - 4635254
Alignment:
Q  376 tataaacttttaattcaacggtcaaatttaaaaaatat 413  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  4635217 tataaacttataatccaacggtcaaatttaaaaaatat 4635254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 28202598 - 28202643
Alignment:
Q  268 gggtgaggggatggtgctccagtccaaagcatgaaagaccttcggg 313  Q
    |||||||||||||||||||||||| ||  || ||||||||||||||    
T  28202598 gggtgaggggatggtgctccagtctaagacaggaaagaccttcggg 28202643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 17136518 - 17136414
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17136518 aattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 17136419  T
Q  361 cacta 365  Q
    |||||    
T  17136418 cacta 17136414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 45136971 - 45137081
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||| |||||||||| ||||||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45136971 aattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 45137070  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  45137071 cactagcgggg 45137081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 261 - 362
Target Start/End: Original strand, 2754052 - 2754153
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2754052 aattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 2754151  T
Q  361 ca 362  Q
    ||    
T  2754152 ca 2754153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 252 - 371
Target Start/End: Complemental strand, 21638037 - 21637918
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||||||||||||||||||| | ||||||| |||   |||||||| |||||||||||||||||||||||||||||||||||||||||    
T  21638037 ggttacaaaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctcc 21637938  T
Q  352 ctccaaaggcactagagggg 371  Q
    ||||||||||||||| ||||    
T  21637937 ctccaaaggcactagcgggg 21637918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 25987662 - 25987773
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatg-aaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    |||||||||||||||||||||||| |||| |||| ||| | |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||    
T  25987662 aattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaag 25987761  T
Q  360 gcactagagggg 371  Q
    ||||||| ||||    
T  25987762 gcactagcgggg 25987773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 36380133 - 36380243
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||||||||||||||  |||||||| | | | ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||    
T  36380133 aattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccctccaaagg 36380232  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  36380233 cactagcgggg 36380243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 261 - 363
Target Start/End: Original strand, 36836330 - 36836432
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||| |||||||||||||||| ||||||||| ||| | |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  36836330 aattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 36836429  T
Q  361 cac 363  Q
    |||    
T  36836430 cac 36836432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 261 - 371
Target Start/End: Complemental strand, 40156171 - 40156061
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||| |||||||||||||||| ||||| ||| | | | ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40156171 aattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 40156072  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  40156071 cactagcgggg 40156061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 261 - 365
Target Start/End: Complemental strand, 44650524 - 44650420
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| || |||||| ||| | |||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||    
T  44650524 aattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaagg 44650425  T
Q  361 cacta 365  Q
    |||||    
T  44650424 cacta 44650420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 6672802 - 6672904
Alignment:
Q  269 ggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagag 368  Q
    |||||||||||||||| ||||||||| ||| | |||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |    
T  6672802 ggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcg 6672901  T
Q  369 ggg 371  Q
    |||    
T  6672902 ggg 6672904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 10745233 - 10745343
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||| | || ||||||||| ||||||||||||||||||| || ||||||||||||||||| |||||    
T  10745233 aattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccctctaaagg 10745332  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  10745333 cactagcgggg 10745343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 262 - 366
Target Start/End: Original strand, 30372682 - 30372786
Alignment:
Q  262 attttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggc 361  Q
    ||||||||||||||| ||||| | ||||| ||| ||||| ||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  362 actag 366  Q
    |||||    
T  30372782 actag 30372786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 558440 - 558545
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||| ||||| | | | |||||||||  |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  558440 aattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccctccaaagg 558539  T
Q  361 cactag 366  Q
    ||||||    
T  558540 cactag 558545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 261 - 366
Target Start/End: Original strand, 2357077 - 2357181
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||||||||||||||||| ||||||||| ||||| ||||||||||  |||||| |||| |||||| ||||||||||||||||||||||||||||    
T  2357077 aattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccctccaaagg 2357175  T
Q  361 cactag 366  Q
     |||||    
T  2357176 tactag 2357181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 26690285 - 26690180
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||||||||||||||||||  |||||||| ||| | ||||||||||  | |||||| |||||||||||||| ||||||||||||||||||||| |    
T  26690285 aattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccctccaaaag 26690186  T
Q  361 cactag 366  Q
    ||||||    
T  26690185 cactag 26690180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 33066721 - 33066616
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    ||||||||| |||||||||||||| ||||||||| | |   ||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||     
T  33066721 aattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaaga 33066622  T
Q  361 cactag 366  Q
    ||||||    
T  33066621 cactag 33066616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 252 - 366
Target Start/End: Complemental strand, 5039560 - 5039446
Alignment:
Q  252 ggttacattaattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 351  Q
    |||||||  |||||||| ||||||||||||||| | ||||||| | | | |||| |||||||||||||||||||||||||||||| |||| |||||||||    
T  5039560 ggttacaaaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctcc 5039461  T
Q  352 ctccaaaggcactag 366  Q
    ||| ||| |||||||    
T  5039460 ctctaaaagcactag 5039446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 261 - 366
Target Start/End: Complemental strand, 3201012 - 3200907
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||| |||| |||||||| |||||| || |||   |||| |||| |||||||||| |||||||||||||| |||||||||||||||||||||||    
T  3201012 aattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccctccaaagg 3200913  T
Q  361 cactag 366  Q
    ||||||    
T  3200912 cactag 3200907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 261 - 359
Target Start/End: Original strand, 13047157 - 13047252
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    |||||||||||||||||||||||||||||||||| ||| | |||| ||| |||||||||||||||||   |||||| ||| ||||||||||||||||||    
T  13047157 aattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactt---aaggtaattatatttacctccctccaaag 13047252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 261 - 359
Target Start/End: Complemental strand, 21487280 - 21487181
Alignment:
Q  261 aattttagggtgagggg-atggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaag 359  Q
    ||||||||| ||||||| ||||||| |||||| || ||| | ||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  21487280 aattttaggatgagggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaag 21487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 261 - 371
Target Start/End: Original strand, 7860147 - 7860257
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaagg 360  Q
    |||||||||| ||||||||| |||  |||||||| |||   || | ||||||||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  7860147 aattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccctccaaagg 7860246  T
Q  361 cactagagggg 371  Q
    |||||| ||||    
T  7860247 cactagcgggg 7860257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 358
Target Start/End: Original strand, 4553561 - 4553657
Alignment:
Q  263 ttttagggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctc-cctccaaa 358  Q
    |||||| ||||||||||||||| |||||| ||  ||   ||||||| ||| ||||||||| ||||||||| ||||||| ||||||||| ||||||||    
T  4553561 ttttagagtgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaa 4553657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 2098827 - 2098875
Alignment:
Q  261 aattttagggtgaggggatggtgctccagtccaaagcatgaaagacctt 309  Q
    |||||||||||||||||||||||| ||||||||| ||| | ||||||||    
T  2098827 aattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 322 - 366
Target Start/End: Complemental strand, 20961551 - 20961507
Alignment:
Q  322 gcacttacaaaggtatttacatttacctccctccaaaggcactag 366  Q
    ||||||||||| | |||||||||||||||||||||| ||||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactag 20961507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 30477240 - 30477280
Alignment:
Q  314 ctcaaagagcacttacaaaggtatttacatttacctccctc 354  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  30477240 ctcaaagagaacttacaaaggtatttagatttacctccctc 30477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 34362730 - 34362673
Alignment:
Q  314 ctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagagggg 371  Q
    |||||||| |||||||||||||||||| |||||| | ||| |||||| | ||||||||    
T  34362730 ctcaaagatcacttacaaaggtatttatatttacataccttcaaaggtattagagggg 34362673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 75; Significance: 4e-34; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 269 - 371
Target Start/End: Original strand, 107700 - 107802
Alignment:
Q  269 ggtgaggggatggtgctccagtccaaagcatgaaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagag 368  Q
    |||||||||||||||| ||||||||| ||| |  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |    
T  107700 ggtgaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcg 107799  T
Q  369 ggg 371  Q
    |||    
T  107800 ggg 107802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 302 - 366
Target Start/End: Original strand, 7011 - 7075
Alignment:
Q  302 aagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactag 366  Q
    ||||||||||| |||||||| ||||| |||||||| |||||||||| |||||||||| |||||||    
T  7011 aagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactag 7075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University