View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_low_23 (Length: 244)
Name: NF9806_low_23
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 30315075 - 30315298
Alignment:
| Q |
1 |
ttgaaatctgcagcatttttcaaaataataacaacgttacaagttattaaaagagtatataataataaataatactcgtaaaatgattgtaatgttgggg |
100 |
Q |
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| T |
30315075 |
ttgaaatctgcaacatttttcaaaataaaaacaacgttacaagttattaaaagagtatataataataaataatactcgtaaaatgattgtaatgttgagg |
30315174 |
T |
|
| Q |
101 |
attaacaatgaatattggactcacggagagtgtcattgactcgaaatctatgtgttcgagcccactgattgtagtcttcagaaggattcacgacccaacc |
200 |
Q |
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| T |
30315175 |
attaacaatgaat--tggactcacggagagtgtcattgactcgaaacctatgtgttcgagcccactgattgtagtcttcagaaggattcacgacccaacc |
30315272 |
T |
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| Q |
201 |
atctttgccaccaacatgaaactcct |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
30315273 |
atctttgccaccaacatgaaactcct |
30315298 |
T |
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