View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9806_low_26 (Length: 236)

Name: NF9806_low_26
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9806_low_26
NF9806_low_26
[»] chr8 (16 HSPs)
chr8 (5-224)||(7966094-7966314)
chr8 (13-123)||(36980563-36980673)
chr8 (75-179)||(28219150-28219254)
chr8 (1-179)||(8621731-8621910)
chr8 (41-124)||(33472042-33472125)
chr8 (62-173)||(10840878-10840988)
chr8 (17-106)||(36404232-36404320)
chr8 (6-174)||(1076476-1076649)
chr8 (67-124)||(36317754-36317811)
chr8 (41-179)||(7981488-7981626)
chr8 (6-106)||(40392527-40392629)
chr8 (6-83)||(4259701-4259779)
chr8 (71-112)||(34645415-34645456)
chr8 (67-123)||(6401005-6401061)
chr8 (92-124)||(9845190-9845222)
chr8 (147-179)||(36317731-36317763)
[»] chr2 (14 HSPs)
chr2 (6-179)||(19110075-19110248)
chr2 (23-172)||(33440546-33440697)
chr2 (17-124)||(34519612-34519720)
chr2 (6-179)||(37773869-37774043)
chr2 (67-124)||(33833721-33833778)
chr2 (6-107)||(38066734-38066835)
chr2 (73-121)||(2764489-2764537)
chr2 (43-179)||(34817012-34817147)
chr2 (15-179)||(45293569-45293732)
chr2 (6-106)||(27900693-27900795)
chr2 (14-124)||(30763618-30763728)
chr2 (14-59)||(11456864-11456909)
chr2 (17-124)||(17766904-17767012)
chr2 (7-106)||(39447155-39447255)
[»] chr7 (20 HSPs)
chr7 (10-175)||(39581662-39581828)
chr7 (6-122)||(36946357-36946474)
chr7 (6-179)||(5278176-5278357)
chr7 (1-179)||(16983804-16983979)
chr7 (72-179)||(37218237-37218346)
chr7 (6-123)||(30861080-30861197)
chr7 (74-173)||(43185720-43185819)
chr7 (6-124)||(48706065-48706183)
chr7 (5-122)||(48775559-48775677)
chr7 (71-124)||(5731325-5731378)
chr7 (6-90)||(6467706-6467791)
chr7 (79-124)||(47239750-47239795)
chr7 (88-202)||(48776314-48776428)
chr7 (25-205)||(8214589-8214772)
chr7 (136-179)||(30861023-30861066)
chr7 (138-172)||(6467346-6467380)
chr7 (63-117)||(22555024-22555078)
chr7 (88-124)||(16278075-16278111)
chr7 (7-106)||(28230534-28230634)
chr7 (7-106)||(37518361-37518461)
[»] chr3 (21 HSPs)
chr3 (1-218)||(11266149-11266365)
chr3 (88-221)||(32024851-32024984)
chr3 (15-122)||(54229972-54230081)
chr3 (135-179)||(54230171-54230215)
chr3 (6-179)||(29048259-29048436)
chr3 (6-106)||(51258395-51258496)
chr3 (88-173)||(512899-512984)
chr3 (69-172)||(5128035-5128138)
chr3 (88-173)||(512341-512426)
chr3 (7-106)||(3902872-3902972)
chr3 (72-119)||(43420266-43420313)
chr3 (65-107)||(28872995-28873037)
chr3 (71-124)||(43472371-43472424)
chr3 (31-113)||(46555325-46555408)
chr3 (65-106)||(50716245-50716286)
chr3 (65-106)||(50796561-50796602)
chr3 (9-85)||(51816258-51816335)
chr3 (17-97)||(8735185-8735265)
chr3 (17-97)||(9087426-9087506)
chr3 (132-172)||(26464760-26464800)
chr3 (88-124)||(27143562-27143598)
[»] chr6 (6 HSPs)
chr6 (17-179)||(4893104-4893267)
chr6 (1-124)||(10310463-10310587)
chr6 (7-106)||(1945596-1945695)
chr6 (7-106)||(7412821-7412920)
chr6 (6-104)||(24604427-24604526)
chr6 (88-120)||(16450182-16450214)
[»] scaffold0400 (1 HSPs)
scaffold0400 (7-156)||(9125-9273)
[»] scaffold0365 (1 HSPs)
scaffold0365 (7-156)||(9768-9916)
[»] chr4 (12 HSPs)
chr4 (6-194)||(47456513-47456702)
chr4 (32-123)||(7863215-7863306)
chr4 (58-179)||(5865199-5865321)
chr4 (67-179)||(14474338-14474449)
chr4 (67-124)||(29515488-29515545)
chr4 (6-106)||(3703315-3703416)
chr4 (71-124)||(47784008-47784061)
chr4 (90-124)||(346314-346348)
chr4 (78-195)||(32600792-32600910)
chr4 (6-51)||(41323158-41323203)
chr4 (67-124)||(20083008-20083065)
chr4 (63-119)||(18487790-18487846)
[»] chr1 (12 HSPs)
chr1 (17-124)||(800878-800986)
chr1 (41-179)||(890428-890566)
chr1 (6-97)||(3561401-3561495)
chr1 (71-123)||(9446185-9446237)
chr1 (6-172)||(24472893-24473059)
chr1 (135-221)||(7828257-7828342)
chr1 (79-173)||(11844259-11844353)
chr1 (73-179)||(25563537-25563642)
chr1 (75-120)||(5210432-5210477)
chr1 (6-106)||(34006252-34006353)
chr1 (88-120)||(3561496-3561528)
chr1 (138-206)||(27794749-27794817)
[»] chr5 (19 HSPs)
chr5 (71-196)||(28445542-28445668)
chr5 (17-124)||(27494233-27494339)
chr5 (48-124)||(23269278-23269354)
chr5 (135-179)||(28624616-28624660)
chr5 (22-124)||(5535537-5535638)
chr5 (6-124)||(13908482-13908603)
chr5 (41-123)||(6801031-6801111)
chr5 (41-123)||(26622024-26622107)
chr5 (136-179)||(33900852-33900895)
chr5 (22-124)||(25968242-25968346)
chr5 (6-106)||(27212663-27212764)
chr5 (17-106)||(38640677-38640766)
chr5 (138-179)||(40613847-40613888)
chr5 (6-85)||(40613741-40613821)
chr5 (42-105)||(11186278-11186341)
chr5 (67-122)||(14001622-14001677)
chr5 (17-121)||(8739268-8739374)
chr5 (74-123)||(4650028-4650077)
chr5 (79-174)||(27157973-27158067)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 5 - 224
Target Start/End: Original strand, 7966094 - 7966314
Alignment:
Q  5 ttttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    ||||| ||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||    
T  7966094 tttttccccttgaaaaaggatgtttaggggtgtacggattctataatccaaaaaattcaagtaacacgccctattttttgatattttcgggttctaaaat 7966193  T
Q  105 ccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttcaatgacatttttgtaa-aaaa 203  Q
    || | |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  7966194 ccgatttggtgaaaaactcatttttttcatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaatctcaatgacatttttgtaagaaaa 7966293  T
Q  204 taaagcgcgcgagaaatagat 224  Q
    |||||||||||| ||||||||    
T  7966294 taaagcgcgcgaaaaatagat 7966314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 123
Target Start/End: Complemental strand, 36980673 - 36980563
Alignment:
Q  13 cttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattg 112  Q
    ||||||||||||||||||||||||| | ||| ||||||||| ||||| | ||| |||| ||||||||||||||  ||||||| ||||||||||  |||||    
T  36980673 cttgaaaaagggtgtttaggggtgttcggatgctataatccgaaaaaatcaagaaacatgccctattttttgaggttttcggtttataaaatctgaattg 36980574  T
Q  113 gtgaaaaactc 123  Q
    |||||||||||    
T  36980573 gtgaaaaactc 36980563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 28219150 - 28219254
Alignment:
Q  75 ctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatcc 174  Q
    |||||||||||  ||||||||||||||||||||||||| |||||||||||       || |||||||||||||||||||||| |||| ||| ||||||||    
T  28219150 ctattttttgaggttttcggattataaaatccaaattgttgaaaaactcatttttttcaccccataacaaaggaaaaactcaattcggattataaaatcc 28219249  T
Q  175 gaaaa 179  Q
     ||||    
T  28219250 caaaa 28219254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 8621731 - 8621910
Alignment:
Q  1 actgttttttcccttgaaaaagggtgtttagg--ggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggatta 98  Q
    ||||||||| ||||||||| ||||||||||||  | ||| | ||||||||||||| |||||| ||| |||| |||  ||||||||||  |||||| ||||    
T  8621731 actgtttttccccttgaaatagggtgtttagggtgatgttcggattctataatccgaaaaatcaaa-taacgcgctatattttttgaggttttcgtatta 8621829  T
Q  99 taaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    ||||||  |||||||||||||| |||       || | ||||||||||||||||||   |||| ||| |||||||||||||    
T  8621830 taaaatttaaattggtgaaaaattcatttttttcacctcataacaaaggaaaaactttattcggattctaaaatccgaaaa 8621910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 124
Target Start/End: Complemental strand, 33472125 - 33472042
Alignment:
Q  41 gattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    ||||||||||||| ||||| | || || | |||||||||||||||  ||||||||||||| ||||| |||||||||||||||||    
T  33472125 gattctataatccgaaaaaatcaaatagcgcgccctattttttgaggttttcggattatagaatccgaattggtgaaaaactca 33472042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 62 - 173
Target Start/End: Original strand, 10840878 - 10840988
Alignment:
Q  62 aaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcg 161  Q
    |||||||  |||||||||||||||  ||||||||||||||||||| |||||||| ||| ||||       || ||||||||||||||||||| |||||||    
T  10840878 aaagtaatgcgccctattttttgaggttttcggattataaaatccgaattggtggaaacctca-ttttttcaccccataacaaaggaaaaacacagttcg 10840976  T
Q  162 aattttaaaatc 173  Q
     ||| |||||||    
T  10840977 gattataaaatc 10840988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 36404232 - 36404320
Alignment:
Q  17 aaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    |||||||||||||||| || | | |||| |||||||| |||||| |  ||||||||||||||||||||| |||||||||||| |||||||    
T  36404232 aaaaagggtgtttaggagttttcggattatataatccgaaaaatcat-gtaacacgccctattttttgagattttcggattacaaaatcc 36404320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 1076649 - 1076476
Alignment:
Q  6 tttttcccttgaaaaagggtgtttaggggtgtaccgattctataatcc----aaaaaattaaagtaacacgccctattttttgatattttcggattataa 101  Q
    |||||||||||||||   |||||||||||||| | |||| |||||||     |||||| | ||| | ||| || ||||||||||  ||||||||||||||    
T  1076649 tttttcccttgaaaataagtgtttaggggtgttcggattatataatctggaaaaaaaaatcaaggaccacaccttattttttgaagttttcggattataa 1076550  T
Q  102 aatccaaattggtgaaaaactca-nnnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatcc 174  Q
    ||||| |||||||||| ||||||        || || |||||||||||||| ||| ||||| ||||||||||||    
T  1076549 aatccgaattggtgaagaactcattttttttcaccctataacaaaggaaaatctcggttcggattttaaaatcc 1076476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 36317811 - 36317754
Alignment:
Q  67 aacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||||||||||||||||    ||||||||||||||||||| |||||||||||||||||    
T  36317811 aacacgccctattttttacggttttcggattataaaatccgaattggtgaaaaactca 36317754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 7981626 - 7981488
Alignment:
Q  41 gattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnn-catcccat 139  Q
    ||||||||| | | ||||| | ||| ||| ||||||||||||| |  ||||||||||||||||||| |||||| |||||||| |        || || ||    
T  7981626 gattctatacttcgaaaaaattaaggaacgcgccctatttttt-aggttttcggattataaaatccgaattggcgaaaaacttattttttttcaccctat 7981528  T
Q  140 aacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    | ||||||||||||||||||| |||| |||||||||||||    
T  7981527 agcaaaggaaaaactcagttcaaattctaaaatccgaaaa 7981488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 40392629 - 40392527
Alignment:
Q  6 tttttcccttgaaaaagggtgtttaggg-gtgtaccgattctataatcc-aaaaaattaaagtaacacgccctattttttgatattttcggattataaaa 103  Q
    ||||||||||||||| ||||||| || | |||| | |||| ||| |||| |||||| | |||| ||||||||||||||||||  |||| |||||||||||    
T  40392629 tttttcccttgaaaacgggtgttcagagagtgttcggattatatcatccgaaaaaaatcaagtgacacgccctattttttgaagtttttggattataaaa 40392530  T
Q  104 tcc 106  Q
    |||    
T  40392529 tcc 40392527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 4259701 - 4259779
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatccaaaaaattaaagtaacacgccctatttttt 83  Q
    |||||||||||||||| |||||||||||| ||  |  ||| |||||||| ||||| | ||| |||||||||||||||||    
T  4259701 tttttcccttgaaaaatggtgtttagggggtgctcaaattatataatccgaaaaaatcaaggaacacgccctatttttt 4259779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 34645456 - 34645415
Alignment:
Q  71 cgccctattttttgatattttcggattataaaatccaaattg 112  Q
    |||||||||||||||  ||||||||| |||||||||||||||    
T  34645456 cgccctattttttgaatttttcggataataaaatccaaattg 34645415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 6401061 - 6401005
Alignment:
Q  67 aacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactc 123  Q
    |||||| ||||||||||||  |||| | ||||||||||| |||| ||||||||||||    
T  6401061 aacacgtcctattttttgaggtttttgaattataaaatcgaaataggtgaaaaactc 6401005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 124
Target Start/End: Complemental strand, 9845222 - 9845190
Alignment:
Q  92 cggattataaaatccaaattggtgaaaaactca 124  Q
    ||||||||||||||| |||||||||||||||||    
T  9845222 cggattataaaatccgaattggtgaaaaactca 9845190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 36317763 - 36317731
Alignment:
Q  147 gaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    ||||||||||||||| |||||||||||||||||    
T  36317763 gaaaaactcagttcggattttaaaatccgaaaa 36317731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 19110075 - 19110248
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    ||||||||||||||||||||||||||||| ||  | ||||||||||||  ||||| | ||| ||||||||||||||||| | ||||| ||||||||||||    
T  19110075 tttttcccttgaaaaagggtgtttagggggtgatcagattctataatcagaaaaaatcaaggaacacgccctattttttcagatttttggattataaaat 19110174  T
Q  105 ccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||||||||||||||| |||       || ||||| ||||||||||||||||||||| ||| |||||||||||||    
T  19110175 ccaaattggtgaaaaa-tcatttttttcaccccatgacaaaggaaaaactcagttcggattctaaaatccgaaaa 19110248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 33440546 - 33440697
Alignment:
Q  23 ggtgtttaggggtgtaccgattctataatcc-aaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaa- 120  Q
    ||||||||||||| | | ||||||||||||| |||||| | ||| |||||||||||||||| ||  ||||||||||||||||||| |||||||||||||     
T  33440546 ggtgtttaggggtattcagattctataatccgaaaaaaatcaaggaacacgccctatttttagaggttttcggattataaaatccgaattggtgaaaaaa 33440645  T
Q  121 ctcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaat 172  Q
    ||||       ||||| |||||||||||||||||||||||| ||| ||||||    
T  33440646 ctcatttttttcatcctataacaaaggaaaaactcagttcggattctaaaat 33440697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 34519612 - 34519720
Alignment:
Q  17 aaaaagggtgtttag-gggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtg 115  Q
    ||||||||||||||| ||||||    |||||||||||||||||| | || || | ||||||||||||||| |||||||||||||||||||  ||||||||    
T  34519612 aaaaagggtgtttagagggtgtttgtattctataatccaaaaaaattaaatagcgcgccctattttttgagattttcggattataaaatctgaattggtg 34519711  T
Q  116 aaaaactca 124  Q
    |||||||||    
T  34519712 aaaaactca 34519720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 179
Target Start/End: Original strand, 37773869 - 37774043
Alignment:
Q  6 tttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaa--agtaacacgccctattttttgatattttcggattataaa 102  Q
    |||||||  |||| ||||||||||| ||||||| | ||||||||||||| |||||  ||  || ||| |||||||||||||||  ||||| ||||||| |    
T  37773869 tttttcctctgaataagggtgtttaaggggtgttcagattctataatccgaaaaaaaaataaggaacgcgccctattttttgaggttttcagattataga 37773968  T
Q  103 atccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    ||||||||||||| ||||||||       || |||||||||||||||| ||||| ||||| || |||||||| ||||    
T  37773969 atccaaattggtg-aaaactca-ttttttcaccccataacaaaggaaacactcaattcgatttctaaaatccaaaaa 37774043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 33833778 - 33833721
Alignment:
Q  67 aacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||| |||||||||||||   | |||||||||||||||||||||||||||||||||||    
T  33833778 aacatgccctattttttggggtgttcggattataaaatccaaattggtgaaaaactca 33833721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 107
Target Start/End: Original strand, 38066734 - 38066835
Alignment:
Q  6 tttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatc 105  Q
    ||||||||||||||| ||||||||| ||||||   | || | |||||| ||||| | |  |||||| |||||||||||||  ||||||||||||||||||    
T  38066734 tttttcccttgaaaaggggtgtttatgggtgtttgggttatgtaatccgaaaaaatcatataacacaccctattttttgaagttttcggattataaaatc 38066833  T
Q  106 ca 107  Q
    ||    
T  38066834 ca 38066835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 2764537 - 2764489
Alignment:
Q  73 ccctattttttgatattttcggattataaaatccaaattggtgaaaaac 121  Q
    |||||||||||||  |||||||||||||||||| |||||||||||||||    
T  2764537 ccctattttttgaggttttcggattataaaatctaaattggtgaaaaac 2764489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 34817147 - 34817012
Alignment:
Q  43 ttctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtg-aaaaactcannnnnnncatcccataa 141  Q
    ||||||||||| ||||  | |||||||||| ||||||||||||  |||||| ||||| ||||| ||||||||| |||||||||       || || ||||    
T  34817147 ttctataatccgaaaacatcaagtaacacgtcctattttttgaggttttcgaattat-aaatctaaattggtgaaaaaactca-ttttttcaccctataa 34817050  T
Q  142 caaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
     || ||||||||||||||| |||||||||||| |||||    
T  34817049 taatggaaaaactcagttcaaattttaaaatctgaaaa 34817012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 179
Target Start/End: Complemental strand, 45293732 - 45293569
Alignment:
Q  15 tgaaaaagggtgtttagggg-tgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattgg 113  Q
    |||||||||||| | ||||| ||| | ||||||||||||| |||||   ||  ||  |||| |||||||| |||||||||||||||||||||| ||||||    
T  45293732 tgaaaaagggtgatcagggggtgttcagattctataatccgaaaaaagcaaaaaatgcgccatatttttttatattttcggattataaaatccgaattgg 45293633  T
Q  114 tgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
     |||| |   |       || |||||||||||| ||||||| |||||||||| ||||||| |||||    
T  45293632 agaaaga--aaaaaaaatcaccccataacaaagaaaaaacttagttcgaattctaaaatctgaaaa 45293569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 27900693 - 27900795
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatcc-aaaaaattaaagtaacacgccctattttttgatattttcggattataaaa 103  Q
    |||||||| |||| ||||||||||||||| ||| |  ||| |||||||| ||||||   ||| ||| |||| ||||||| ||||||| ||||||||||||    
T  27900693 tttttcccctgaagaagggtgtttagggggtgttcgaattttataatccgaaaaaaagcaagaaacgcgccatatttttagatatttccggattataaaa 27900792  T
Q  104 tcc 106  Q
    |||    
T  27900793 tcc 27900795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 124
Target Start/End: Complemental strand, 30763728 - 30763618
Alignment:
Q  14 ttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattgg 113  Q
    |||||||| |||||||| |||||| | |||| |||||||||||||| | ||  ||| || |||||||||  |  |||||| ||||||||||   ||||||    
T  30763728 ttgaaaaatggtgtttaagggtgttcggattatataatccaaaaaaatcaacgaacgcgtcctatttttaaaatttttcgaattataaaatgtgaattgg 30763629  T
Q  114 tgaaaaactca 124  Q
    |||||| ||||    
T  30763628 tgaaaacctca 30763618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 11456909 - 11456864
Alignment:
Q  14 ttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaa 59  Q
    |||||||||| ||||||||||||| | ||||||||||||| |||||    
T  11456909 ttgaaaaaggatgtttaggggtgtcctgattctataatccgaaaaa 11456864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 17766904 - 17767012
Alignment:
Q  17 aaaaagggtgtttaggggtgtaccgattctataatcc-aaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtg 115  Q
    ||||| ||||||||||||||| | ||||||||||||| |||||| | || ||   || ||||| ||||||  |||| ||||||||||||   ||||| ||    
T  17766904 aaaaaaggtgtttaggggtgttcagattctataatccgaaaaaaatcaaatagtgcggcctatattttgagttttttggattataaaatgtgaattgatg 17767003  T
Q  116 aaaaactca 124  Q
    |||||||||    
T  17767004 aaaaactca 17767012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 39447255 - 39447155
Alignment:
Q  7 ttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatc 105  Q
    |||| ||||||||||||||||||| ||||| | | |||| | |||||| ||||  | | ||||  |||||||||||||||  ||||||||||| ||||||    
T  39447255 ttttaccttgaaaaagggtgtttatggggtttccagattatgtaatccgaaaacatcatgtaatgcgccctattttttgaagttttcggattacaaaatc 39447156  T
Q  106 c 106  Q
    |    
T  39447155 c 39447155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 175
Target Start/End: Complemental strand, 39581828 - 39581662
Alignment:
Q  10 tcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaa 108  Q
    ||||||||||||||||||||| |||||||    |||||||||||| ||||    ||||||| || | |||||||| |  ||||||||||||||||| |||    
T  39581828 tcccttgaaaaagggtgtttatggggtgtttgaattctataatccgaaaatagcaagtaacgcgtcttattttttaaggttttcggattataaaattcaa 39581729  T
Q  109 attggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccg 175  Q
    ||| ||||||||||||        ||||||||| |||| |||||||||||||||||| |||||||||    
T  39581728 atttgtgaaaaactcattttttttatcccataataaagaaaaaactcagttcgaattctaaaatccg 39581662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 6 - 122
Target Start/End: Original strand, 36946357 - 36946474
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagg-ggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    |||||||||||||||| ||||||||   |||||   |||| |||||||||||||| | ||||||| | | |||||||||||  |||||||||||||||||    
T  36946357 tttttcccttgaaaaaaggtgtttaaatggtgtttggattttataatccaaaaaaattaagtaacgcactctattttttgaggttttcggattataaaat 36946456  T
Q  105 ccaaattggtgaaaaact 122  Q
    || |||||||||||||||    
T  36946457 cctaattggtgaaaaact 36946474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 5278357 - 5278176
Alignment:
Q  6 tttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatcc------aaaaaattaaagtaacacgccctattttttgatattttcggatta 98  Q
    |||||||||||||| ||||| |||| |||||||   |||||||||||||      ||| || | ||| |||||||| |||||||| |  |||||||||||    
T  5278357 tttttcccttgaaagagggtatttaaggggtgtttggattctataatccgaagaaaaataaatcaaggaacacgccttatttttttaggttttcggatta 5278258  T
Q  99 taaaatccaaattggtgaaaaactca-nnnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||||||  |||||||||||||||||        || ||| ||||||||||||||||| ||||| ||||||||||| |||||    
T  5278257 taaaatctgaattggtgaaaaactcattttttttcaccccttaacaaaggaaaaactccgttcggattttaaaatctgaaaa 5278176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 16983804 - 16983979
Alignment:
Q  1 actgttttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattata 100  Q
    |||||||||||||| |||||| |||||||| || ||| | |||||||||||   |||||   ||| ||||| | |||||||||||  |||| ||||||||    
T  16983804 actgttttttccct-gaaaaatggtgtttatgg-tgttcggattctataatttgaaaaaaacaaggaacacacactattttttgaggtttttggattata 16983901  T
Q  101 aaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||||| ||||| ||||| ||| |       ||||| |||| |||||||||||||| |||||||| |||||||||||||    
T  16983902 aaatccgaattgttgaaagact-aattttttcatcctataaaaaaggaaaaactcacttcgaattctaaaatccgaaaa 16983979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 72 - 179
Target Start/End: Original strand, 37218237 - 37218346
Alignment:
Q  72 gccctattttttgatattttcggattataaaatccaaattggtgaaaaactca--nnnnnnncatcccataacaaaggaaaaactcagttcgaattttaa 169  Q
    ||||||||||||||  ||||||||||||||||||| |||||||||| ||||||         || || |||||||| |||||||||||||||  ||||||    
T  37218237 gccctattttttgaagttttcggattataaaatccgaattggtgaagaactcattttttctccaccctataacaaaagaaaaactcagttcgggttttaa 37218336  T
Q  170 aatccgaaaa 179  Q
    ||||||||||    
T  37218337 aatccgaaaa 37218346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 123
Target Start/End: Complemental strand, 30861197 - 30861080
Alignment:
Q  6 tttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    |||||||| ||||||| |||||||| ||||||| | ||||||||||||| |||||   ||| ||||| | |||||||||||    |||||||||||||||    
T  30861197 tttttcccctgaaaaaaggtgtttatggggtgttcggattctataatccgaaaaaagcaaggaacacacactattttttga-ggattcggattataaaat 30861099  T
Q  105 ccaaattggtgaaaaactc 123  Q
    |||||| | ||||||||||    
T  30861098 ccaaatcgatgaaaaactc 30861080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 74 - 173
Target Start/End: Complemental strand, 43185819 - 43185720
Alignment:
Q  74 cctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatc 173  Q
    ||||||||||||  ||||||||||||||||| | ||||||||||||||||        || || |||||||||||||||||||| | | |||||||||||    
T  43185819 cctattttttgaagttttcggattataaaattcgaattggtgaaaaactcttttttttcaccctataacaaaggaaaaactcagattggattttaaaatc 43185720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 48706065 - 48706183
Alignment:
Q  6 tttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatc 105  Q
    |||| |||||||| ||||||||| | |||| | |  |||||||||||  |||||   ||| ||| ||||||| ||||||   | ||||||||||||||||    
T  48706065 ttttccccttgaataagggtgttcaagggtcttcaaattctataatctgaaaaaagcaaggaacgcgccctaatttttggggtgttcggattataaaatc 48706164  T
Q  106 caaattggtgaaaaactca 124  Q
    |||||||||||||||||||    
T  48706165 caaattggtgaaaaactca 48706183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 122
Target Start/End: Complemental strand, 48775677 - 48775559
Alignment:
Q  5 ttttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaa 103  Q
    ||||||||||||||| ||| |||||| ||||||| |  |||| ||||||| ||||  | ||||||  | |||||||||||||  |||||| |||||||||    
T  48775677 ttttttcccttgaaataggatgtttaaggggtgttcgaattccataatccgaaaacatcaagtaatgcaccctattttttgaggttttcgaattataaaa 48775578  T
Q  104 tccaaattggtgaaaaact 122  Q
    ||| |||| || |||||||    
T  48775577 tccgaattagtaaaaaact 48775559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 5731325 - 5731378
Alignment:
Q  71 cgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    ||||||||||||||| |||||||||||  ||||||| || ||||||||||||||    
T  5731325 cgccctattttttgagattttcggatttcaaaatccgaaatggtgaaaaactca 5731378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 90
Target Start/End: Complemental strand, 6467791 - 6467706
Alignment:
Q  6 tttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattt 90  Q
    ||||||||||||||||||||||||| ||||||| | |||| | |||||| || || | | ||||||| ||||||||||||| ||||    
T  6467791 tttttcccttgaaaaagggtgtttagggggtgttcggattatgtaatccgaacaaatcatgtaacacaccctattttttgagattt 6467706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 47239750 - 47239795
Alignment:
Q  79 tttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||||||| ||||||||||||||||||  |||||||||||||||||    
T  47239750 tttttgatgttttcggattataaaatctgaattggtgaaaaactca 47239795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 48776314 - 48776428
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttcaatg 187  Q
    ||||| || |||||||| | |||||||||||||||||       || || |||  |||||||||||||| ||||||||||||||||  ||||  |||| |    
T  48776314 ttttcagactataaaattcgaattggtgaaaaactcatttttttcaccctatagtaaaggaaaaactcaattcgaattttaaaatctaaaaatctcaaag 48776413  T
Q  188 acatttttgtaaaaa 202  Q
    ||||||||| |||||    
T  48776414 acatttttgaaaaaa 48776428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 205
Target Start/End: Original strand, 8214589 - 8214772
Alignment:
Q  25 tgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgat---attttcggattataaaatccaaattggtgaaaaac 121  Q
    ||||||||||||| |  |||||| ||||| ||||| | || || | || ||||||||||| |   || ||||||||||||||| | |||  |||||||||    
T  8214589 tgtttaggggtgttcaaattctaaaatccgaaaaaatcaaatagcgcgtcctattttttgttgagatgttcggattataaaattcgaatatgtgaaaaac 8214688  T
Q  122 tcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttcaatgacatttttgtaaaaaata 205  Q
    |||       ||||| |||| |||||||||   | ||||  |||||||||||||||||  |||| |||||||||| ||||||||    
T  8214689 tcatttttttcatcctataataaaggaaaacaccggttcagattttaaaatccgaaaatctcaaagacatttttgaaaaaaata 8214772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 30861066 - 30861023
Alignment:
Q  136 ccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    ||||||||||||||||||||| |||| ||| |||||||||||||    
T  30861066 ccataacaaaggaaaaactcaattcggattctaaaatccgaaaa 30861023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 6467346 - 6467380
Alignment:
Q  138 ataacaaaggaaaaactcagttcgaattttaaaat 172  Q
    ||||||||||||||| |||||||||||||||||||    
T  6467346 ataacaaaggaaaaattcagttcgaattttaaaat 6467380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 22555024 - 22555078
Alignment:
Q  63 aagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaa 117  Q
    ||||||| ||||||||||||| |  || ||| |||||||||||||||||||||||    
T  22555024 aagtaacgcgccctattttttaaggttatcgaattataaaatccaaattggtgaa 22555078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 16278111 - 16278075
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaactca 124  Q
    ||||||||||||||||| | |||||||||||||||||    
T  16278111 ttttcggattataaaattcgaattggtgaaaaactca 16278075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 28230534 - 28230634
Alignment:
Q  7 ttttcccttgaaaaagggtgtttaggggtgtaccg-attctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatc 105  Q
    |||| |||||||||||||||||||||||  | ||| ||| | ||||||  |||  | ||||||| |||||||||||||||  ||| ||||||| ||||||    
T  28230534 ttttaccttgaaaaagggtgtttagggggtttccggattatgtaatccggaaacatcaagtaacgcgccctattttttgaagtttccggattacaaaatc 28230633  T
Q  106 c 106  Q
    |    
T  28230634 c 28230634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 37518361 - 37518461
Alignment:
Q  7 ttttcccttgaaaaagggtgtttaggggtgtaccg-attctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatc 105  Q
    |||| |||||||||| ||||||||||||  | ||| ||| | ||||||  ||| || | |||||||||||||||||||||  |||  |||||||||||||    
T  37518361 ttttaccttgaaaaatggtgtttagggggtttccggattatgtaatccggaaacttcatgtaacacgccctattttttgaagtttctggattataaaatc 37518460  T
Q  106 c 106  Q
    |    
T  37518461 c 37518461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 11266365 - 11266149
Alignment:
Q  1 actgttttttcccttgaaaaagggtgtttaggggt-gtaccgattctataatccaaaaaattaaagtaacacgccctattttttgata-ttttcggatta 98  Q
    |||||||||||| |||||||||||||||||||||  || |  |||||||||||| |||||   ||| |||| |||||||||||| |   |||||||||||    
T  11266365 actgttttttcc-ttgaaaaagggtgtttaggggcagttcaaattctataatccgaaaaaagcaaggaacatgccctatttttttaaggttttcggatta 11266267  T
Q  99 taaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttca-atga-catttttg 196  Q
    ||||||| ||||| ||||||||| ||       |||||||||| ||||||||| ||||||||| ||| |||| ||||||||  ||| |||| ||||||||    
T  11266266 taaaatctaaatttgtgaaaaacgca--tttttcatcccataataaaggaaaagctcagttcggattctaaattccgaaaa--tcacatgagcatttttg 11266171  T
Q  197 taaaaaataaagcgcgcgagaa 218  Q
    ||||||| | ||||||||||||    
T  11266170 taaaaaacacagcgcgcgagaa 11266149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 88 - 221
Target Start/End: Complemental strand, 32024984 - 32024851
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttcaatg 187  Q
    ||||||||||| ||||||| ||||||||||||||||        || || |||| |||||||||  ||||||||||||||||||||||||||  |||| |    
T  32024984 ttttcggattacaaaatccgaattggtgaaaaactctttttgttcaccctataataaaggaaaacatcagttcgaattttaaaatccgaaaatctcaaag 32024885  T
Q  188 acatttttgtaaaaaataaagcgcgcgagaaata 221  Q
    ||||||| | ||||| || ||||  |||||||||    
T  32024884 acattttcgaaaaaagtagagcgtacgagaaata 32024851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 122
Target Start/End: Original strand, 54229972 - 54230081
Alignment:
Q  15 tgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaatta--aagtaacacgccctattttttgatattttcggattataaaatccaaattg 112  Q
    |||||||||||||||| |||| | |  |||||||||||| |||||  |  ||| |||| |||||||| |||||  ||||| |||||||||||||||||||    
T  54229972 tgaaaaagggtgtttaagggttttcatattctataatccgaaaaaaaagcaaggaacatgccctattctttgaggttttccgattataaaatccaaattg 54230071  T
Q  113 gtgaaaaact 122  Q
    ||||||||||    
T  54230072 gtgaaaaact 54230081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 54230171 - 54230215
Alignment:
Q  135 cccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    ||||||||||||||||||||||||||| |||||||||||||||||    
T  54230171 cccataacaaaggaaaaactcagttcggattttaaaatccgaaaa 54230215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 6 - 179
Target Start/End: Complemental strand, 29048436 - 29048259
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatcc--aaaaaattaaagtaacacgccctattttttgatattttcggattataaa 102  Q
    |||||||||||||||||| |||||||||| ||| | |||||||||||||  |||||| | ||| |||  ||||||||||| ||  ||| |  ||||||||    
T  29048436 tttttcccttgaaaaaggatgtttagggggtgttcggattctataatccgaaaaaaaatcaaggaacttgccctatttttggaggttt-catattataaa 29048338  T
Q  103 atccaaattggtgaaaaactcannnnnnn--catcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||  ||||||||||||||||          || |||||||||||||||||||| |||||| |||||||||||| ||||    
T  29048337 atctgaattggtgaaaaactctttttttcttcaccccataacaaaggaaaaacttagttcggattttaaaatccaaaaa 29048259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 51258496 - 51258395
Alignment:
Q  6 tttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    |||||||||||||||| |||||||| ||||||| | |||| | |||||| ||||| | | ||||| ||||||||||||||| ||||  |||||| |||||    
T  51258496 tttttcccttgaaaaatggtgtttagggggtgttcggattatgtaatccgaaaaaattatgtaacgcgccctattttttgaaatttatggattacaaaat 51258397  T
Q  105 cc 106  Q
    ||    
T  51258396 cc 51258395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 512899 - 512984
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatc 173  Q
    |||||||||||||| |||| |||| |||||||| |||       ||||||||||||||||||||||||| |||| ||| |||||||    
T  512899 ttttcggattataagatccgaattagtgaaaaattcattttcttcatcccataacaaaggaaaaactcaattcggattataaaatc 512984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 69 - 172
Target Start/End: Original strand, 5128035 - 5128138
Alignment:
Q  69 cacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaatttta 168  Q
    |||||| ||||||||||  |||||| |||||||||||| |||||||||| ||||||       || || ||||||||| |||||||| ||| | ||||||    
T  5128035 cacgccttattttttgaagttttcgaattataaaatccgaattggtgaagaactcatttttttcaccctataacaaagtaaaaactccgtttggatttta 5128134  T
Q  169 aaat 172  Q
    ||||    
T  5128135 aaat 5128138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 173
Target Start/End: Original strand, 512341 - 512426
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatc 173  Q
    |||||||||||||| |||| |||| |||||||| |||       ||||||||||||||||||||||||| |||  ||| |||||||    
T  512341 ttttcggattataagatccgaattagtgaaaaattcattttcttcatcccataacaaaggaaaaactcaattcagattataaaatc 512426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 3902872 - 3902972
Alignment:
Q  7 ttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatc 105  Q
    |||| ||||||||||||||||||| ||||| | | |||| | |||||||||||  | | ||||| ||| |||||||||||  ||||||||||| ||||||    
T  3902872 ttttaccttgaaaaagggtgtttagggggtttccggattatgtaatccaaaaacatcatgtaacgcgctctattttttgaagttttcggattacaaaatc 3902971  T
Q  106 c 106  Q
    |    
T  3902972 c 3902972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 43420266 - 43420313
Alignment:
Q  72 gccctattttttgatattttcggattataaaatccaaattggtgaaaa 119  Q
    |||||||||||||   ||||||||||||||||| ||||||||||||||    
T  43420266 gccctattttttggggttttcggattataaaattcaaattggtgaaaa 43420313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 107
Target Start/End: Complemental strand, 28873037 - 28872995
Alignment:
Q  65 gtaacacgccctattttttgatattttcggattataaaatcca 107  Q
    ||||| || |||||||||||| |||||||||||||||||||||    
T  28873037 gtaacgcgtcctattttttgaaattttcggattataaaatcca 28872995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 124
Target Start/End: Original strand, 43472371 - 43472424
Alignment:
Q  71 cgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    ||||||||| |||||  |||||| ||||||||| || |||||||||||||||||    
T  43472371 cgccctattgtttgaggttttcgaattataaaagccgaattggtgaaaaactca 43472424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 31 - 113
Target Start/End: Complemental strand, 46555408 - 46555325
Alignment:
Q  31 ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgata--ttttcggattataaaatccaaattgg 113  Q
    ||||||| | ||||||||||||||||||| | ||| |||| ||||||||||||  ||  ||||||||||||| ||||| ||||||    
T  46555408 ggggtgttcagattctataatccaaaaaagt-aagaaacaagccctatttttttttaggttttcggattatataatccgaattgg 46555325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Complemental strand, 50716286 - 50716245
Alignment:
Q  65 gtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    |||||||||||||||||||||  ||||||||||| |||||||    
T  50716286 gtaacacgccctattttttgaagttttcggattacaaaatcc 50716245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 106
Target Start/End: Original strand, 50796561 - 50796602
Alignment:
Q  65 gtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    |||||||||||||||||||||  ||||||||||| |||||||    
T  50796561 gtaacacgccctattttttgaagttttcggattacaaaatcc 50796602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 51816335 - 51816258
Alignment:
Q  9 ttcccttgaaaaagggtgtttag-gggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttga 85  Q
    ||||||||||||||||||||||| |||||| | | ||||||||||| ||||| | ||||||  |  ||||||||||||    
T  51816335 ttcccttgaaaaagggtgtttagagggtgttcgggttctataatccgaaaaaatcaagtaatgcatcctattttttga 51816258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 8735265 - 8735185
Alignment:
Q  17 aaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggatt 97  Q
    ||||||||||||||||||| |   ||||||||||||| ||||| | || || | | ||||||||||||| ||||| |||||    
T  8735265 aaaaagggtgtttaggggtttttggattctataatccgaaaaaatcaaatagcgcaccctattttttgagatttttggatt 8735185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 97
Target Start/End: Complemental strand, 9087506 - 9087426
Alignment:
Q  17 aaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggatt 97  Q
    ||||||||||||||||||| |   ||||||||||||| ||||| | || || | | ||||||||||||| ||||| |||||    
T  9087506 aaaaagggtgtttaggggtttttggattctataatccgaaaaaatcaaatagcgcaccctattttttgagatttttggatt 9087426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 26464800 - 26464760
Alignment:
Q  132 catcccataacaaaggaaaaactcagttcgaattttaaaat 172  Q
    ||||||||||||||||| |||||||||||| ||| ||||||    
T  26464800 catcccataacaaaggataaactcagttcggattctaaaat 26464760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 27143562 - 27143598
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  27143562 ttttcggattataaaatctaaattggtgaaaatctca 27143598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 179
Target Start/End: Complemental strand, 4893267 - 4893104
Alignment:
Q  17 aaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtg 115  Q
    |||||||||||||  ||||||| | ||||||||||||| |||||   ||| |||||  |||||||||| |  |||| | |||||||||||| ||||   |    
T  4893267 aaaaagggtgtttttggggtgttcggattctataatccgaaaaaaacaaggaacacatcctattttttaaggttttggaattataaaatccgaattaaag 4893168  T
Q  116 aaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||||||||       ||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  4893167 aaaaactcatttttttcatcccataacaaaggaaaaaatcagttcaaattttaaaatccgaaaa 4893104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 10310463 - 10310587
Alignment:
Q  1 actgttttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatccaaaaaatta-aagtaacacgccctattttttgatattttcggatta 98  Q
    |||||||||||||| ||| ||||||||||||||| ||| | |||||||||||||||||||  | ||| |||  |||||||||||| | ||||||| ||||    
T  10310463 actgttttttccct-gaataagggtgtttagggggtgttcggattctataatccaaaaaaaaataaggaacgtgccctatttttttagattttcgaatta 10310561  T
Q  99 taaaatccaaattggtgaaaaactca 124  Q
    |||||| |||||| ||||||||||||    
T  10310562 taaaattcaaatttgtgaaaaactca 10310587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Original strand, 1945596 - 1945695
Alignment:
Q  7 ttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    ||||| ||||||||| || |||||||||||| | |||| ||||||||  |||||| | ||||| | ||||| |||||||  ||||||||||| |||||||    
T  1945596 ttttcacttgaaaaatggggtttaggggtgttcagattatataatccggaaaatttatgtaacgcaccctagtttttgaagttttcggattacaaaatcc 1945695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 106
Target Start/End: Complemental strand, 7412920 - 7412821
Alignment:
Q  7 ttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    |||| |||||||||||||||||||||||| | | |||| | ||||||  |||  | | |||||||||||||||||||||  ||| ||||||| |||||||    
T  7412920 ttttaccttgaaaaagggtgtttaggggttttcggattatgtaatccggaaacatcatgtaacacgccctattttttgaagtttccggattacaaaatcc 7412821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 104
Target Start/End: Original strand, 24604427 - 24604526
Alignment:
Q  6 tttttcccttgaaaaagggtgttt-aggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    |||||||||||||||| ||||||| |||||||| | |||| | |||||| || || | | |||| ||||||||||||||||  |||| |||||| |||||    
T  24604427 tttttcccttgaaaaatggtgtttaaggggtgttcggattatgtaatccgaagaaatcatgtaagacgccctattttttgaagtttttggattacaaaat 24604526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Complemental strand, 16450214 - 16450182
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaa 120  Q
    ||||||||||||||||||| |||||||||||||    
T  16450214 ttttcggattataaaatccgaattggtgaaaaa 16450182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 9273 - 9125
Alignment:
Q  7 ttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    ||||||| ||||||| || |||||||||| | | ||||||||||||||||||| | ||| |||||||||||||| ||||  |||| ||||||||||||||    
T  9273 ttttcccctgaaaaatggcgtttaggggtattcggattctataatccaaaaaagt-aaggaacacgccctatttcttgaggtttttggattataaaatcc 9175  T
Q  107 aaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactca 156  Q
     ||  ||||||||| |||        |||||||||||||| |||||||||    
T  9174 gaaccggtgaaaaattcatttttttaatcccataacaaagaaaaaactca 9125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 156
Target Start/End: Complemental strand, 9916 - 9768
Alignment:
Q  7 ttttcccttgaaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    ||||||| ||||||| || |||||||||| | | ||||||||||||||||||| | ||| |||||||||||||| ||||  |||| ||||||||||||||    
T  9916 ttttcccctgaaaaatggcgtttaggggtattcggattctataatccaaaaaagt-aaggaacacgccctatttcttgaggtttttggattataaaatcc 9818  T
Q  107 aaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactca 156  Q
     ||  ||||||||| |||        |||||||||||||| |||||||||    
T  9817 gaaccggtgaaaaattcatttttttaatcccataacaaagaaaaaactca 9768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 194
Target Start/End: Complemental strand, 47456702 - 47456513
Alignment:
Q  6 tttttcccttgaaaaagggtgtttaggg-gtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    |||||||| ||||||| | ||||||||| |||| |||||| |||||||| |||||   ||| ||| | |||||||||||||  |||| |||| |||||||    
T  47456702 tttttcccctgaaaaaagatgtttagggcgtgttccgattttataatccgaaaaaaacaaggaacgctccctattttttgaggtttttggatcataaaat 47456603  T
Q  105 ccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttcaatgacatttt 194  Q
    ||||||  |||||||||||        ||  |||||||||| ||||||||||||||| |||| ||||||| ||||  |||| ||||||||    
T  47456602 ccaaatatgtgaaaaactcttttttttcacgccataacaaatgaaaaactcagttcggatttcaaaatccaaaaatctcaaggacatttt 47456513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 32 - 123
Target Start/End: Complemental strand, 7863306 - 7863215
Alignment:
Q  32 gggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactc 123  Q
    |||||| | ||||||||||||  ||||| | ||||||| |||||||||||||||  |||||  |||||||||||||||||||||||||||||    
T  7863306 gggtgttcggattctataatctgaaaaacttaagtaacgcgccctattttttgaggttttcaaattataaaatccaaattggtgaaaaactc 7863215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 58 - 179
Target Start/End: Original strand, 5865199 - 5865321
Alignment:
Q  58 aattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactc-annnnnnncatcccataacaaaggaaaaactca 156  Q
    |||| ||| ||| ||||||||||||||| |||||| ||||||||||||| || |||||||||||||         || ||||||||||||||||||||||    
T  5865199 aattcaaggaacgcgccctattttttgaaattttcagattataaaatccgaactggtgaaaaactctttttttgtcaccccataacaaaggaaaaactca 5865298  T
Q  157 gttcgaattttaaaatccgaaaa 179  Q
    ||||||||| |||| || |||||    
T  5865299 gttcgaattctaaactctgaaaa 5865321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 67 - 179
Target Start/End: Original strand, 14474338 - 14474449
Alignment:
Q  67 aacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattt 166  Q
    |||||||||||||||| ||  ||||||||||||||||||| |||||||||| ||||||       |||||||||| |||||||||||||| || | |||     
T  14474338 aacacgccctattttt-gaggttttcggattataaaatccgaattggtgaagaactcatttttttcatcccataaaaaaggaaaaactcaatttggattc 14474436  T
Q  167 taaaatccgaaaa 179  Q
    ||||||| |||||    
T  14474437 taaaatctgaaaa 14474449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 29515488 - 29515545
Alignment:
Q  67 aacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    ||||| |||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  29515488 aacacaccctattttttgaggttttcggattataaaatctaaattggtgaaaaactca 29515545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 106
Target Start/End: Original strand, 3703315 - 3703416
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    |||||||||||||||| |||||||||||| ||| |  ||| | |||||| ||||| | | |||||||| ||||||||||||  ||||||||||| |||||    
T  3703315 tttttcccttgaaaaatggtgtttagggggtgttcgaattatgtaatccgaaaaaatcatgtaacacgtcctattttttgaagttttcggattacaaaat 3703414  T
Q  105 cc 106  Q
    ||    
T  3703415 cc 3703416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 47784061 - 47784008
Alignment:
Q  71 cgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||||||||||||||||||||  ||||||||||||| ||||| |||||||||||    
T  47784061 cgccctattttttgatattttaagattataaaatcctaattgatgaaaaactca 47784008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 346314 - 346348
Alignment:
Q  90 ttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||||||||||||||||||||||||||||||||||    
T  346314 ttcggattataaaatccaaattggtgaaaaactca 346348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 195
Target Start/End: Complemental strand, 32600910 - 32600792
Alignment:
Q  78 ttttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnn-catcccataacaaaggaaaaactcagttcgaattttaaaatccga 176  Q
    ||||||||  |||| ||||||||||| || |||||||||||||||||        || || |||||||| || |||||||||||||||| ||||||||||    
T  32600910 ttttttgagttttttggattataaaacccgaattggtgaaaaactcattttttttcaccctataacaaaagacaaactcagttcgaattctaaaatccga 32600811  T
Q  177 aaagttcaatgacattttt 195  Q
     ||  |||||| |||||||    
T  32600810 taatctcaatggcattttt 32600792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 41323158 - 41323203
Alignment:
Q  6 tttttcccttgaaaaagggtgtttaggggtgtaccgattctataat 51  Q
    ||||||||||||||||||||||||| |||||| |||||| ||||||    
T  41323158 tttttcccttgaaaaagggtgtttaagggtgttccgattatataat 41323203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 124
Target Start/End: Complemental strand, 20083065 - 20083008
Alignment:
Q  67 aacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||||||| ||||||||||  |||| | |||||| ||||| |||||||||||||||||    
T  20083065 aacacgccatattttttgaggtttttgaattatagaatccgaattggtgaaaaactca 20083008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Original strand, 18487790 - 18487846
Alignment:
Q  63 aagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaa 119  Q
    ||||||| || ||||||||||||  ||||| ||||| |||||| |||||||||||||    
T  18487790 aagtaacgcgtcctattttttgaggttttctgattaaaaaatctaaattggtgaaaa 18487846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 800878 - 800986
Alignment:
Q  17 aaaaagggtgtttagggg-tgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtg 115  Q
    ||||| |||||||||||| ||| | ||||||||||||| ||||| | || |||  ||||||||||||||| |||||||||||| ||||||| |||| |||    
T  800878 aaaaatggtgtttagggggtgttcggattctataatccgaaaaaatcaaataaagcgccctattttttgagattttcggattacaaaatccgaattagtg 800977  T
Q  116 aaaaactca 124  Q
    |||||||||    
T  800978 aaaaactca 800986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 890566 - 890428
Alignment:
Q  41 gattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccata 140  Q
    ||||||||||||| |||||   | | |||||||||||||||||||  ||||||||||||||||||| |||| |||||||| |||       || ||||||    
T  890566 gattctataatccgaaaaaagcagggaacacgccctattttttgaggttttcggattataaaatccgaattcgtgaaaaagtcatttttttcaccccata 890467  T
Q  141 acaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||||| ||||| || ||||| ||| ||||||| |||||    
T  890466 acaaagaaaaaattcggttcggattctaaaatctgaaaa 890428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 97
Target Start/End: Original strand, 3561401 - 3561495
Alignment:
Q  6 tttttcccttgaaaaagggtgtttag--gggtgtaccgattctataatcc-aaaaaattaaagtaacacgccctattttttgatattttcggatt 97  Q
    ||||||||||||||||||||||||||  |||||| | ||||||||||||| |||||| | |||||||| ||||||||| || | |||||||||||    
T  3561401 tttttcccttgaaaaagggtgtttaggagggtgttcagattctataatccgaaaaaaatcaagtaacatgccctatttatttagattttcggatt 3561495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 9446185 - 9446237
Alignment:
Q  71 cgccctattttttgatattttcggattataaaatccaaattggtgaaaaactc 123  Q
    ||||||||||||||| |||||||||||| ||||||| ||||||||||||||||    
T  9446185 cgccctattttttgagattttcggattacaaaatccgaattggtgaaaaactc 9446237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 6 - 172
Target Start/End: Original strand, 24472893 - 24473059
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatcc--aaaaaattaaagtaacacgccctattttttgatattttcggattataaa 102  Q
    ||||||||||||||||||||| ||| ||| |||   ||||||||||||   |||||| | ||||| | | |||||||||||||  |||||||||||||||    
T  24472893 tttttcccttgaaaaagggtgattaagggatgttaggattctataatctgaaaaaaaatcaagtagcgcaccctattttttgaagttttcggattataaa 24472992  T
Q  103 atccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaat 172  Q
    ||| ||| ||| ||||||||||       || || |||||||||||||||| |||||| |||||||||||    
T  24472993 atctaaactggcgaaaaactca--tttttca-cctataacaaaggaaaaacgcagttcaaattttaaaat 24473059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 7828342 - 7828257
Alignment:
Q  135 cccataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttcaatgacatttttgtaaaaaataaagcgcgcgagaaata 221  Q
    ||||||| ||||||||||||||||||  |||||||||||||||||  |||| | || ||||  |||||||| |||||||||||||||    
T  7828342 cccataagaaaggaaaaactcagttcagattttaaaatccgaaaatctcaagggca-ttttcaaaaaaatagagcgcgcgagaaata 7828257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 79 - 173
Target Start/End: Complemental strand, 11844353 - 11844259
Alignment:
Q  79 tttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatc 173  Q
    |||||||  ||||||||||||||||||| ||||||||||||||||        || || ||||||||||||||||  |||||| |||||||||||    
T  11844353 tttttgaggttttcggattataaaatccgaattggtgaaaaactctttattttcacccaataacaaaggaaaaacatagttcggattttaaaatc 11844259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 179
Target Start/End: Original strand, 25563537 - 25563642
Alignment:
Q  73 ccctattttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaat 172  Q
    |||||||||||||  ||||||||||||||||||  |||||||| |||||||         | || |||||||||||||||||||||||| ||| ||||||    
T  25563537 ccctattttttgagtttttcggattataaaatctgaattggtggaaaactctttttttt-accctataacaaaggaaaaactcagttcggattctaaaat 25563635  T
Q  173 ccgaaaa 179  Q
    |||||||    
T  25563636 ccgaaaa 25563642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 120
Target Start/End: Original strand, 5210432 - 5210477
Alignment:
Q  75 ctattttttgatattttcggattataaaatccaaattggtgaaaaa 120  Q
    ||||||| |||  |||||||||| ||||||||||||||||||||||    
T  5210432 ctattttatgaggttttcggattttaaaatccaaattggtgaaaaa 5210477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 34006353 - 34006252
Alignment:
Q  6 tttttcccttgaaaaagggtgttta-ggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    ||||||||||||||||||||||||| ||||||| |  ||| | ||||||  |||| | | ||| | |||||||||||||||  ||| ||||||| |||||    
T  34006353 tttttcccttgaaaaagggtgtttatggggtgttcaaattatgtaatccggaaaaatcatgtagcccgccctattttttgaattttccggattaaaaaat 34006254  T
Q  105 cc 106  Q
    ||    
T  34006253 cc 34006252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 120
Target Start/End: Original strand, 3561496 - 3561528
Alignment:
Q  88 ttttcggattataaaatccaaattggtgaaaaa 120  Q
    ||||||||||||||||||||||||| |||||||    
T  3561496 ttttcggattataaaatccaaattgatgaaaaa 3561528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 27794817 - 27794749
Alignment:
Q  138 ataacaaaggaaaaactcagttcgaattttaaaatccgaaaagttcaatgacatttttgtaaaaaataa 206  Q
    ||||||||||||||   ||||||| ||| | ||||||||||| ||||| | |||||||| |||||||||    
T  27794817 ataacaaaggaaaacaccagttcggattatgaaatccgaaaatttcaagggcatttttgaaaaaaataa 27794749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 196
Target Start/End: Original strand, 28445542 - 28445668
Alignment:
Q  71 cgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca-nnnnnnncatcccataacaaaggaaaaactcagttcgaattttaa 169  Q
    ||||||||||||||| |||||||||||| ||||||| |||||||||||||||||        || |  ||||||||||||||  | |||||| |||||||    
T  28445542 cgccctattttttgagattttcggattacaaaatccgaattggtgaaaaactcattttttttcaccttataacaaaggaaaacattagttcggattttaa 28445641  T
Q  170 aatccgaaaagttcaatgacatttttg 196  Q
    ||||||||||  |||| ||||||||||    
T  28445642 aatccgaaaatctcaaggacatttttg 28445668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 17 - 124
Target Start/End: Original strand, 27494233 - 27494339
Alignment:
Q  17 aaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtga 116  Q
    ||||| ||||||||||| ||| | |||||||||||| |||||  | || || | || ||||||||||||  |||||||||| ||||||||||||||||||    
T  27494233 aaaaaaggtgtttaggg-tgttcggattctataatctaaaaatatcaaatagcgcgtcctattttttgaggttttcggattttaaaatccaaattggtga 27494331  T
Q  117 aaaactca 124  Q
    ||||||||    
T  27494332 aaaactca 27494339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 23269354 - 23269278
Alignment:
Q  48 taatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactca 124  Q
    |||||| ||||| | |||||| || ||||||||| ||| |||||||||||||||||||| |||| ||||||||||||    
T  23269354 taatccgaaaaaatcaagtaaaacaccctattttatgagattttcggattataaaatccgaattagtgaaaaactca 23269278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 135 - 179
Target Start/End: Original strand, 28624616 - 28624660
Alignment:
Q  135 cccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  28624616 cccataacaaaggaaaaactcagttcgaattctaaaatccgaaaa 28624660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 22 - 124
Target Start/End: Original strand, 5535537 - 5535638
Alignment:
Q  22 gggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaac 121  Q
    |||||||||||||||| | |||| |||||||  |||||   ||| |||||||||| ||||||  | | |||||||||||||||| |||||||||||||||    
T  5535537 gggtgtttaggggtgttcggattttataatctgaaaaaagcaaggaacacgccct-ttttttattgtgttcggattataaaatctaaattggtgaaaaac 5535635  T
Q  122 tca 124  Q
    |||    
T  5535636 tca 5535638  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 6 - 124
Target Start/End: Complemental strand, 13908603 - 13908482
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagg-ggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgata--ttttcggattataaa 102  Q
    ||||||||||||||||| ||||||||| ||||| |  ||| |||||||| ||||| | ||||| || ||| ||||||||  ||  |||| ||||||||||    
T  13908603 tttttcccttgaaaaagagtgtttaggaggtgttcaaattatataatccgaaaaaatcaagtagcatgccttatttttttttaggtttttggattataaa 13908504  T
Q  103 atccaaattggtgaaaaactca 124  Q
    |||| |||||||||| ||||||    
T  13908503 atccgaattggtgaagaactca 13908482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Original strand, 6801031 - 6801111
Alignment:
Q  41 gattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactc 123  Q
    |||| |||||||| ||||| | || || |||||||||||||  ||  ||||||||||||||||||| ||||||||||||||||    
T  6801031 gattttataatccgaaaaaatcaaatagcacgccctatttt--gaggttttcggattataaaatccgaattggtgaaaaactc 6801111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 123
Target Start/End: Complemental strand, 26622107 - 26622024
Alignment:
Q  41 gattctataatccaaaaaatta-aagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaactc 123  Q
    ||||||||||||  |||||| | ||| |||||||| ||||||||||  |||||| |||||||||||| || |||||||||||||    
T  26622107 gattctataatctgaaaaataacaaggaacacgccttattttttgaggttttcgaattataaaatccgaactggtgaaaaactc 26622024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 179
Target Start/End: Complemental strand, 33900895 - 33900852
Alignment:
Q  136 ccataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||||||||||||||||| |||||||||||||||||||| ||||    
T  33900895 ccataacaaaggaaaaacacagttcgaattttaaaatccaaaaa 33900852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 124
Target Start/End: Complemental strand, 25968346 - 25968242
Alignment:
Q  22 gggtgtttagggg--tgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggtgaaaa 119  Q
    |||||||||||||  ||| | |||| |||||||| |||||   ||| |||||  |||||||||||   | ||||||||||||||||| ||||||||||||    
T  25968346 gggtgtttagggggctgttcggattttataatccgaaaaaagcaaggaacacatcctattttttggggtattcggattataaaatccgaattggtgaaaa 25968247  T
Q  120 actca 124  Q
    |||||    
T  25968246 actca 25968242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 106
Target Start/End: Complemental strand, 27212764 - 27212663
Alignment:
Q  6 tttttcccttgaaaaagggtgtttaggg-gtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaat 104  Q
    |||||||||| |||||||||||| |||| |||| | | || | |||||| ||||| | | ||||| | ||||||||||||| |||||||||||| |||||    
T  27212764 tttttcccttcaaaaagggtgttcagggtgtgttctggttatgtaatccgaaaaaatcatgtaacgcaccctattttttgagattttcggattacaaaat 27212665  T
Q  105 cc 106  Q
    ||    
T  27212664 cc 27212663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 106
Target Start/End: Complemental strand, 38640766 - 38640677
Alignment:
Q  17 aaaaagggtgtttaggggtgtaccgattctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatcc 106  Q
    ||||||||||||||||||||| | |||| | |||||| || || | |  |||| ||||||||||||||| |||| | |||||||||||||    
T  38640766 aaaaagggtgtttaggggtgttcggattatgtaatccgaataaatcatttaacgcgccctattttttgagatttccagattataaaatcc 38640677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 40613847 - 40613888
Alignment:
Q  138 ataacaaaggaaaaactcagttcgaattttaaaatccgaaaa 179  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  40613847 ataacaaaggaaaaactcagttcggattttaaaatctgaaaa 40613888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 40613741 - 40613821
Alignment:
Q  6 tttttcccttgaaaaagggtgtttagggg-tgtaccgattctataatccaaaaaattaaagtaacacgccctattttttga 85  Q
    |||||||||| ||||| |||||||| ||| ||| |  |||||||||||  ||||||| ||||||||||||| |||||||||    
T  40613741 tttttcccttaaaaaatggtgtttatgggatgttcgaattctataatctgaaaaattcaagtaacacgcccaattttttga 40613821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 11186278 - 11186341
Alignment:
Q  42 attctataatccaaaaaattaaagtaacacgccctattttttgatattttcggattataaaatc 105  Q
    |||||||||||| |||||   ||| ||| |||||||||||||||  ||||||||||||||||||    
T  11186278 attctataatccgaaaaaagcaaggaacgcgccctattttttgaggttttcggattataaaatc 11186341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 122
Target Start/End: Complemental strand, 14001677 - 14001622
Alignment:
Q  67 aacacgccctattttttgatattttcggattataaaatccaaattggtgaaaaact 122  Q
    |||||||||||||||||||  ||||| ||||||||||| | ||||||| |||||||    
T  14001677 aacacgccctattttttgaggttttcagattataaaattcgaattggtaaaaaact 14001622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 8739268 - 8739374
Alignment:
Q  17 aaaaagggtgtttagggg-tgtaccgattctataatcc-aaaaaattaaagtaacacgccctattttttgatattttcggattataaaatccaaattggt 114  Q
    |||||||||||||||||| ||| |  ||||||||| || |||||| | || || ||| |||||||||||||  ||||||||||||||| | | |||| ||    
T  8739268 aaaaagggtgtttagggggtgttcgtattctataaaccgaaaaaaatcaaatagcacaccctattttttgaggttttcggattataaatttcgaattagt 8739367  T
Q  115 gaaaaac 121  Q
    |||||||    
T  8739368 gaaaaac 8739374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 4650077 - 4650028
Alignment:
Q  74 cctattttttgatattttcggattataaaatccaaattggtgaaaaactc 123  Q
    ||||||||| ||| |||| |||||| ||||||| ||||||||||||||||    
T  4650077 cctatttttggatttttttggattacaaaatccgaattggtgaaaaactc 4650028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 174
Target Start/End: Complemental strand, 27158067 - 27157973
Alignment:
Q  79 tttttgatattttcggattataaaatccaaattggtgaaaaactcannnnnnncatcccataacaaaggaaaaactcagttcgaattttaaaatcc 174  Q
    |||||||  |||| |||||||||||||| ||||  |||||||||||       || || |||||||||||| ||||||||||| ||||||||||||    
T  27158067 tttttgacgtttttggattataaaatccgaatttatgaaaaactcaattttt-caccctataacaaaggaacaactcagttcggattttaaaatcc 27157973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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