View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9806_low_29 (Length: 217)

Name: NF9806_low_29
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9806_low_29
NF9806_low_29
[»] chr2 (25 HSPs)
chr2 (9-200)||(27364334-27364525)
chr2 (13-200)||(45399394-45399580)
chr2 (9-199)||(35285791-35285980)
chr2 (9-190)||(33907834-33908014)
chr2 (9-200)||(36632549-36632739)
chr2 (9-190)||(26828102-26828282)
chr2 (9-190)||(30570057-30570237)
chr2 (12-190)||(11707220-11707397)
chr2 (9-200)||(11448334-11448523)
chr2 (9-200)||(1514484-1514674)
chr2 (9-126)||(26822223-26822340)
chr2 (13-200)||(18092222-18092405)
chr2 (9-190)||(19167367-19167547)
chr2 (9-126)||(16723921-16724038)
chr2 (9-126)||(19126256-19126373)
chr2 (9-126)||(21098292-21098409)
chr2 (9-130)||(33663364-33663485)
chr2 (9-190)||(5252937-5253117)
chr2 (9-130)||(45204587-45204708)
chr2 (39-130)||(4812147-4812238)
chr2 (9-130)||(42885977-42886098)
chr2 (143-190)||(33663274-33663321)
chr2 (152-190)||(26822342-26822380)
chr2 (164-200)||(45204508-45204544)
chr2 (166-200)||(4812282-4812316)
[»] scaffold0016 (1 HSPs)
scaffold0016 (9-200)||(101278-101468)
[»] chr1 (29 HSPs)
chr1 (9-200)||(17672026-17672217)
chr1 (9-200)||(45005346-45005536)
chr1 (9-200)||(12245378-12245569)
chr1 (9-200)||(36682615-36682805)
chr1 (9-200)||(50561625-50561815)
chr1 (10-201)||(52310411-52310601)
chr1 (9-200)||(48340891-48341081)
chr1 (9-190)||(44406936-44407116)
chr1 (33-130)||(16031184-16031281)
chr1 (9-126)||(18814795-18814912)
chr1 (9-126)||(34688163-34688280)
chr1 (9-130)||(38844761-38844882)
chr1 (9-126)||(31620265-31620382)
chr1 (9-126)||(34692691-34692808)
chr1 (9-126)||(41829608-41829725)
chr1 (9-132)||(10694375-10694498)
chr1 (9-126)||(52521175-52521292)
chr1 (9-126)||(41962486-41962603)
chr1 (140-200)||(47135980-47136040)
chr1 (84-200)||(51965335-51965451)
chr1 (140-200)||(17707384-17707444)
chr1 (165-200)||(10694290-10694325)
chr1 (13-59)||(17709428-17709474)
chr1 (152-190)||(34692810-34692848)
chr1 (152-190)||(31620384-31620422)
chr1 (152-190)||(34688282-34688320)
chr1 (152-190)||(41962445-41962483)
chr1 (152-190)||(52521135-52521173)
chr1 (161-190)||(41829568-41829597)
[»] chr3 (33 HSPs)
chr3 (9-200)||(32756081-32756271)
chr3 (9-200)||(11597457-11597647)
chr3 (9-200)||(48520537-48520727)
chr3 (9-200)||(54934373-54934563)
chr3 (9-200)||(55294278-55294468)
chr3 (13-200)||(52462428-52462614)
chr3 (13-200)||(54513353-54513542)
chr3 (9-190)||(16342223-16342403)
chr3 (9-190)||(50741940-50742120)
chr3 (9-186)||(51248871-51249047)
chr3 (9-200)||(40824166-40824357)
chr3 (8-186)||(18741739-18741916)
chr3 (9-190)||(49113632-49113812)
chr3 (9-200)||(8243058-8243260)
chr3 (9-190)||(21699094-21699274)
chr3 (9-200)||(23194756-23194950)
chr3 (9-126)||(50770817-50770934)
chr3 (9-126)||(35087410-35087525)
chr3 (9-107)||(31368604-31368702)
chr3 (9-190)||(52852962-52853131)
chr3 (9-122)||(6103700-6103813)
chr3 (53-190)||(54648398-54648534)
chr3 (9-127)||(48977251-48977364)
chr3 (30-130)||(2843489-2843589)
chr3 (68-200)||(52842206-52842340)
chr3 (61-200)||(39092942-39093083)
chr3 (140-190)||(48977614-48977664)
chr3 (17-107)||(50802789-50802879)
chr3 (17-107)||(50872998-50873088)
chr3 (140-190)||(19406844-19406894)
chr3 (152-190)||(50770777-50770815)
chr3 (152-190)||(31368546-31368584)
chr3 (152-190)||(35087370-35087408)
[»] chr7 (24 HSPs)
chr7 (10-200)||(42826857-42827047)
chr7 (9-200)||(27734550-27734740)
chr7 (9-200)||(9149896-9150086)
chr7 (9-200)||(23299224-23299414)
chr7 (9-190)||(11500431-11500611)
chr7 (9-190)||(42688126-42688306)
chr7 (9-200)||(33638175-33638365)
chr7 (9-200)||(47175034-47175222)
chr7 (9-199)||(42918435-42918625)
chr7 (13-126)||(14309430-14309543)
chr7 (9-190)||(19521721-19521900)
chr7 (9-190)||(17470303-17470483)
chr7 (9-190)||(17482920-17483100)
chr7 (9-190)||(17570114-17570294)
chr7 (9-190)||(17582731-17582911)
chr7 (9-190)||(17478485-17478665)
chr7 (9-190)||(17574549-17574729)
chr7 (9-126)||(8925484-8925601)
chr7 (9-126)||(23766013-23766130)
chr7 (9-190)||(33031432-33031609)
chr7 (13-190)||(5963272-5963437)
chr7 (9-107)||(41261972-41262070)
chr7 (152-190)||(8925444-8925482)
chr7 (161-190)||(14309554-14309583)
[»] chr5 (30 HSPs)
chr5 (13-200)||(41781379-41781566)
chr5 (9-200)||(20995392-20995582)
chr5 (9-200)||(33930348-33930539)
chr5 (9-186)||(3150113-3150289)
chr5 (9-190)||(27066406-27066586)
chr5 (9-190)||(21030643-21030823)
chr5 (9-190)||(1851465-1851645)
chr5 (9-190)||(3029289-3029468)
chr5 (9-190)||(17997102-17997282)
chr5 (9-190)||(19448529-19448709)
chr5 (9-190)||(35539429-35539609)
chr5 (9-200)||(33706269-33706459)
chr5 (9-190)||(20350469-20350649)
chr5 (9-190)||(38934996-38935176)
chr5 (10-126)||(7286212-7286328)
chr5 (9-190)||(34373888-34374069)
chr5 (12-130)||(12420161-12420279)
chr5 (9-130)||(4882806-4882927)
chr5 (9-126)||(33610708-33610825)
chr5 (9-190)||(20758479-20758659)
chr5 (15-126)||(26320645-26320756)
chr5 (9-181)||(3396650-3396821)
chr5 (9-126)||(30689847-30689964)
chr5 (9-107)||(2195699-2195797)
chr5 (83-200)||(287225-287341)
chr5 (9-190)||(10511871-10512050)
chr5 (152-190)||(7286330-7286368)
chr5 (152-190)||(33610668-33610706)
chr5 (170-200)||(12420077-12420107)
chr5 (161-190)||(26320605-26320634)
[»] chr4 (30 HSPs)
chr4 (9-200)||(41983745-41983935)
chr4 (9-200)||(7847612-7847803)
chr4 (9-190)||(33502523-33502703)
chr4 (9-200)||(17740629-17740819)
chr4 (9-190)||(19830919-19831099)
chr4 (9-190)||(35495123-35495303)
chr4 (9-200)||(47556938-47557128)
chr4 (9-190)||(17699764-17699944)
chr4 (9-186)||(37701123-37701299)
chr4 (9-190)||(53342998-53343177)
chr4 (9-190)||(7643314-7643494)
chr4 (9-190)||(39742517-39742696)
chr4 (9-190)||(55998234-55998414)
chr4 (9-190)||(28973650-28973831)
chr4 (9-190)||(2776865-2777045)
chr4 (9-190)||(13628643-13628823)
chr4 (9-190)||(36857656-36857836)
chr4 (9-200)||(40622739-40622926)
chr4 (14-190)||(22115573-22115748)
chr4 (9-190)||(38008849-38009031)
chr4 (9-126)||(5271860-5271977)
chr4 (9-130)||(8531406-8531527)
chr4 (9-126)||(14829096-14829213)
chr4 (9-190)||(36514862-36515042)
chr4 (9-126)||(23479488-23479605)
chr4 (9-126)||(34056148-34056265)
chr4 (9-81)||(54331273-54331345)
chr4 (61-190)||(19109279-19109407)
chr4 (141-190)||(21353738-21353787)
chr4 (152-190)||(34056108-34056146)
[»] chr8 (35 HSPs)
chr8 (9-200)||(22946285-22946475)
chr8 (9-190)||(44600013-44600193)
chr8 (9-200)||(44382285-44382475)
chr8 (9-190)||(22332222-22332402)
chr8 (13-190)||(36597530-36597706)
chr8 (9-190)||(38962481-38962661)
chr8 (9-190)||(38993996-38994177)
chr8 (14-190)||(41629206-41629381)
chr8 (9-190)||(38992825-38993006)
chr8 (9-177)||(19248427-19248595)
chr8 (9-177)||(19321611-19321779)
chr8 (9-189)||(6476989-6477168)
chr8 (9-180)||(42810439-42810608)
chr8 (9-185)||(3751426-3751601)
chr8 (10-190)||(23522155-23522334)
chr8 (9-190)||(19395057-19395237)
chr8 (9-200)||(41533344-41533534)
chr8 (9-126)||(9761580-9761697)
chr8 (9-126)||(42785481-42785598)
chr8 (9-107)||(30826706-30826804)
chr8 (9-126)||(27273544-27273661)
chr8 (9-126)||(33423817-33423934)
chr8 (9-130)||(45293125-45293247)
chr8 (9-126)||(5835908-5836025)
chr8 (9-122)||(14078392-14078505)
chr8 (9-130)||(41977811-41977932)
chr8 (65-200)||(41156963-41157100)
chr8 (52-190)||(7015510-7015644)
chr8 (143-199)||(45291976-45292032)
chr8 (152-190)||(5836027-5836065)
chr8 (152-190)||(27273663-27273701)
chr8 (152-190)||(9761699-9761737)
chr8 (152-190)||(14078348-14078386)
chr8 (152-190)||(33423777-33423815)
chr8 (152-190)||(42785600-42785638)
[»] chr6 (27 HSPs)
chr6 (9-199)||(34321647-34321836)
chr6 (9-190)||(17940072-17940252)
chr6 (9-198)||(33320960-33321148)
chr6 (9-190)||(7222863-7223043)
chr6 (9-190)||(15276188-15276368)
chr6 (9-190)||(22373358-22373538)
chr6 (9-130)||(25540484-25540605)
chr6 (9-126)||(11933060-11933177)
chr6 (9-126)||(33814543-33814660)
chr6 (9-190)||(4425037-4425218)
chr6 (9-190)||(18312343-18312522)
chr6 (9-190)||(30044760-30044939)
chr6 (9-190)||(35041640-35041820)
chr6 (9-126)||(18598563-18598680)
chr6 (9-126)||(1072841-1072958)
chr6 (9-126)||(2521717-2521834)
chr6 (9-126)||(14887516-14887633)
chr6 (9-126)||(34856504-34856621)
chr6 (15-126)||(21800099-21800210)
chr6 (33-200)||(14832059-14832225)
chr6 (164-200)||(25540645-25540681)
chr6 (152-190)||(1072801-1072839)
chr6 (152-190)||(11933020-11933058)
chr6 (152-190)||(18598523-18598561)
chr6 (152-190)||(21800212-21800250)
chr6 (152-190)||(33814662-33814700)
chr6 (152-190)||(34856623-34856661)
[»] scaffold0242 (1 HSPs)
scaffold0242 (9-190)||(2927-3107)
[»] scaffold0032 (2 HSPs)
scaffold0032 (9-200)||(10914-11101)
scaffold0032 (9-200)||(4465-4652)
[»] scaffold1634 (1 HSPs)
scaffold1634 (9-190)||(540-720)
[»] scaffold0079 (1 HSPs)
scaffold0079 (9-200)||(10233-10422)
[»] scaffold0045 (1 HSPs)
scaffold0045 (9-200)||(12426-12616)
[»] scaffold0010 (2 HSPs)
scaffold0010 (13-199)||(120477-120662)
scaffold0010 (9-190)||(177027-177207)
[»] scaffold0047 (1 HSPs)
scaffold0047 (9-190)||(25867-26047)
[»] scaffold0121 (1 HSPs)
scaffold0121 (9-169)||(14866-15025)
[»] scaffold0110 (1 HSPs)
scaffold0110 (9-190)||(48744-48923)
[»] scaffold0115 (2 HSPs)
scaffold0115 (9-126)||(515-632)
scaffold0115 (151-200)||(3123-3172)
[»] scaffold0005 (1 HSPs)
scaffold0005 (9-126)||(10496-10613)
[»] scaffold0122 (2 HSPs)
scaffold0122 (42-126)||(5099-5183)
scaffold0122 (152-190)||(5185-5223)
[»] scaffold1891 (1 HSPs)
scaffold1891 (152-190)||(115-153)


Alignment Details
Target: chr2 (Bit Score: 159; Significance: 8e-85; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 27364525 - 27364334
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  27364525 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttttttgcttcatttcatc 27364426  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |||||||||||||||||||||| |       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27364425 tgttttaaatatgggtatcaatcctttttttggtaactctataacaacaacgctcttttttataattttggataatatgtaatcataattca 27364334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 45399394 - 45399580
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45399394 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtt 45399493  T
Q  113 ttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||||||| ||       ||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  45399494 ttaaatatgggtatcaa-tccttttttggtaactctataacaacaattctcttttttataattttggataatatgtaatcataattca 45399580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 9 - 199
Target Start/End: Complemental strand, 35285980 - 35285791
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  35285980 tttggtattcatgatccgcacgttcaacatatcaccttaattctaatcatatactagattatcttcactcactgatgctacttatttgcttgatttcatc 35285881  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattc 199  Q
    ||||||||||||||||||||| ||       |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  35285880 tgttttaaatatgggtatcaa-tcattttttggtaactttataacaacaacactcttttttataattttgaataatatgtaatcataattc 35285791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 33907834 - 33908014
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||||||||||||||||| |||||||     
T  33907834 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcaccgatgctacttctttgcttgatttcatt 33907933  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  33907934 tgatgtaaatatgggtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 33908014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 36632739 - 36632549
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  36632739 tttggtgttcatgatcctcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgctttatttcatt 36632640  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| |||||||| ||| |||| ||||||||||| |||||||||||||||||||||||    
T  36632639 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaataacactctattttataatttgggataatatgtaatcataattca 36632549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 26828102 - 26828282
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||  ||||||||||||||||| |||||||     
T  26828102 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactaaattatattcactcaccgatgctacttctttgcttgatttcatt 26828201  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  26828202 tgatgtaaatatgggtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 26828282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 30570237 - 30570057
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  30570237 tttggtgttcgtgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 30570138  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||| ||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30570137 tgatgtaaatatgagtaacaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 30570057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 12 - 190
Target Start/End: Original strand, 11707220 - 11707397
Alignment:
Q  12 ggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgt 111  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||||||||||||||||| ||||||| |      
T  11707220 ggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcaccgatgctacttctttgcttgatttcatttaa 11707319  T
Q  112 tttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  11707320 tgtaaatatgggtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 11707397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 11448334 - 11448523
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||||  | |||||||||||||| |||||||     
T  11448334 tttggtgttcatgatccccactttcaacagatcaccttaactctaaccctagactagattatcttcactcactgtttctacttctttgcttgatttcatt 11448433  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||| ||||||||||       |||||||  ||||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  11448434 tgatgtaaatatgagtatcaattc-ttttttggtaactccataacaa-aacactcttttttataattttggataatatgtaatcataattca 11448523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 1514674 - 1514484
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||| ||||||||||||||||||||| | |||||||| || | |||||||||||||||  |||||| |||||||||| ||||||||    
T  1514674 tttggtgttcatgatccggactttcaacagatcaccttaactttaatcctaaacaaaattatcttcactcaccgatgctatttctttgcttgatttcatc 1514575  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | ||||||| |||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||| |||||||| |||||||    
T  1514574 tgatgtaaatatcggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataacatgtaatcgtaattca 1514484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 26822223 - 26822340
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||     
T  26822223 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcgtagactagattatcttcactcactaatgctacttctttgcttgatttcatt 26822322  T
Q  109 tgttttaaatatgggtat 126  Q
    || | | |||||||||||    
T  26822323 tgatgtcaatatgggtat 26822340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 18092405 - 18092222
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtt 112  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||| |  |||||||||||||||||  ||||||||| |||  || |||||||||| |    
T  18092405 gtgttcatgatccacactttcaacagatcaccttaactctaatcctagataagattatcttcactcaccgatgctacttatttatttgatttcatctgat 18092306  T
Q  113 ttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
     |||||||||||||||| ||       || |||| |   |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  18092305 gtaaatatgggtatcaa-tccttttttggcaactct---acaacaacactcttttttataattttggataatatgtaatcataattca 18092222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 19167547 - 19167367
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||| |||  ||||||||||||||||||   ||| ||||||||||||| |||||||     
T  19167547 tttggtgttcattatccgcactttcaacagatcaccttaactctaattctaggctagattatcttcactcatcgatgttacttctttgcttgatttcatt 19167448  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       | ||| | ||||||||||||  |||||||||||||||||||||||||||||    
T  19167447 tgatgtaaatatgggtatcaa-tcattttttgataattctataacaacaacattcttttttataattttggataatatgtaa 19167367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 16724038 - 16723921
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| ||||||||||   |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  16724038 tttggtgttcatgatccgcactttcaacatatcaccttaacattaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 16723939  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  16723938 tgatgtaaatatgggtat 16723921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 19126373 - 19126256
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||| |||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| ||| ||||||||||||| |||||||     
T  19126373 tttggtgttcacgatccgcactttcaacagatcaccttaactctaatcctagacaagattatcttcactcactgatgttacttctttgcttgatttcatt 19126274  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  19126273 tgatgtaaatatgggtat 19126256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 21098292 - 21098409
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| ||||| |||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  21098292 tttggtgttcatgatccgcactttcaacatatcacattaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 21098391  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  21098392 tgatgtaaatatgggtat 21098409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 33663485 - 33663364
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||| |||||||||||||||  |||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  33663485 tttggtgttcataatccgcactttcaacgaatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 33663386  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    || | |||||||||||||||||    
T  33663385 tgatgtaaatatgggtatcaat 33663364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 5252937 - 5253117
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| ||||||||||| |||||||||||| ||| |||||| |||||||||||||||||||| |||| |||||||||| || |||||||     
T  5252937 tttggtgttcatgattcgcactttcaagagatcaccttaactctgatcctagactagattatcttcactcaccaatgttacttctttgtttgatttcatt 5253036  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |  | | |||||| ||||||| ||         ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  5253037 ttatgtgaatatgtgtatcaa-tcattttttattaactctataacaacaactctcttttttataattttggataatatgtaa 5253117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45204708 - 45204587
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||  |||||||||| ||| |||||||| |||||||| ||| ||||||||||||| |||||||     
T  45204708 tttggtgttcatgatccgcactttcaacatatcaccttatctctaatcctagactggattatctccactcactgatgttacttctttgcttgatttcatt 45204609  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    || | |||||||||||||||||    
T  45204608 tgatgtaaatatgggtatcaat 45204587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 4812147 - 4812238
Alignment:
Q  39 atcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaat 130  Q
    ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||| | ||||||||||||||||||||||||||||||    
T  4812147 atcaccttaattctaatcctatactagattatcttcattcactgatgctagttctttgcctgatttcatctgttttaaatatgggtatcaat 4812238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 42885977 - 42886098
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||| ||||| | |||||||||||||||||||||| |||||||||| | ||||||||||||||||||  ||||||||||||||||| ||||||      
T  42885977 tttggtgttaatgattcacactttcaacagatcaccttaactctaatcctagattagattatcttcactcaccgatgctacttctttgcttgatttcact 42886076  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    || | |||||||| ||||||||    
T  42886077 tgatgtaaatatgagtatcaat 42886098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Complemental strand, 33663321 - 33663274
Alignment:
Q  143 aactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||| |||||||||||| |||||||||| |||||||||||||||||||    
T  33663321 aactctataacaacaacactcttttttacaattttggataatatgtaa 33663274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 26822342 - 26822380
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  26822342 acaacaacactcttttttataattttggataatatgtaa 26822380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 45204544 - 45204508
Alignment:
Q  164 ttttttataattttggataatatgtaatcataattca 200  Q
    |||||| ||||||||||||||||||||||||||||||    
T  45204544 ttttttgtaattttggataatatgtaatcataattca 45204508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 4812282 - 4812316
Alignment:
Q  166 ttttataattttggataatatgtaatcataattca 200  Q
    |||||||||||| ||||||||||||||||||||||    
T  4812282 ttttataattttcgataatatgtaatcataattca 4812316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 101278 - 101468
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  101278 tttggtgttcatgatccgcactttcaaccgatcaccttaattctaatcctatactagattatcttcactcactggtgctacttctttgcttgatttcatc 101377  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||||||||||| ||       ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  101378 tgttttaaatatgggtatcaa-tccttttttggtaactctataacaaaaacgctcttttttataattttggataatatgtaatcataattca 101468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 7e-73; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 17672026 - 17672217
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  17672026 tttggtgttcatgatctgcactttcaacagatcaccttaattctaatcctatagtagattatcttcactcactgatgctacttctttgcttgatttcatc 17672125  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    | ||||||||||||||||||||         ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17672126 tattttaaatatgggtatcaatcttttttttggtaactctataacaacaacgctcttttttataattttggataatatgtaatcataattca 17672217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 45005346 - 45005536
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  45005346 tttggtgttcatgatccgcactttcaacatattactttaattctaatcctatactagattatcttcactcactgatgctacttctttgcttgatttcatc 45005445  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||| ||||||||||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45005446 tgttttaaatatgagtatcaattc-ttttttggtaactctataacaacaacactcttttttataattttggataatatgtaatcataattca 45005536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 12245569 - 12245378
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  12245569 tttggtattcatgatccgcacgttcaacatatcaccttaattctaatcatatactagattatcttcactcactgatgctacttatttgcttgatttcatc 12245470  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |||||||||||||||||||||| |       ||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  12245469 tgttttaaatatgggtatcaatcctttttttggtaactctataacaacaacactcttttttataattttgaataatatgtaatcataattca 12245378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 36682615 - 36682805
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| ||||||||||||| || || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||    
T  36682615 tttggtgttcatgattcgcactttcaacatattactttaattctaatcctatactagattatcttc-ctcactgatgctacttctttgcttgatttcatc 36682713  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||| ||||||||||       ||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  36682714 tgttttaaatatgagtatcaattc-ttttttggtaactctataacaacaacactctttttttataattttggataatatgtaatcataattca 36682805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 50561625 - 50561815
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||  ||||||||||||||||| ||||||||    
T  50561625 tttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctaaacaagattatcttcactcaccgatgctacttctttgcttgatttcatc 50561724  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||| ||||||| ||       | ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  50561725 tgatgtaaatatgagtatcaa-tccttttttgataactctaaaacaacaacactcttttttataattttggataatatgtaatcataattca 50561815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 10 - 201
Target Start/End: Original strand, 52310411 - 52310601
Alignment:
Q  10 ttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatct 109  Q
    |||||||||||||| |||||||||| ||||||||||||| |||||||||| || |||||||||| ||||||  |||||||||||||| || ||||||| |    
T  52310411 ttggtgttcatgattcgcactttcagcagatcaccttaactctaatcctagacaagattatctttactcaccgatgctacttctttgtttgatttcatat 52310510  T
Q  110 gttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattcat 201  Q
    | | |||||||||||||||| ||       ||||||| || ||||||||| ||||||||||||||||| |||||||||||||||||||||||    
T  52310511 gatgtaaatatgggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttagataatatgtaatcataattcat 52310601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 48340891 - 48341081
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||| |||| |||||||||  ||||||| || ||||||||||||||||||||| ||| ||||||||||||| |||||||     
T  48340891 tttggtgttcatgatccgcactttgaacatatcaccttatctctaatcttagactagattatcttcactcactgatgttacttctttgcttgatttcatt 48340990  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| |||||||| |||  | |||||| ||||||||||||||||||||||||||||||    
T  48340991 tgatgtaaatatgggtatcaa-tccttttttggtaactctataacaaaaacatttttttttgtaattttggataatatgtaatcataattca 48341081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 44406936 - 44407116
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| ||||||||||||  |||||||||| ||||||| || |||| ||||||||||||||| |||| |||||||||| || ||||||||    
T  44406936 tttggtgttcatgattcgcactttcaactaatcaccttaactctaatcatagactatattatcttcactcaccaatgttacttctttgtttgatttcatc 44407035  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  44407036 tgatctgaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 44407116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 33 - 130
Target Start/End: Complemental strand, 16031281 - 16031184
Alignment:
Q  33 caacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaat 130  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||    
T  16031281 caacatatcaccttaattctaatcctatactagattatcttcactcactgatgctgcttctttgcttgatttcatctgttttaaatatgggtatcaat 16031184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 18814795 - 18814912
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  18814795 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 18814894  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  18814895 tgatgtaaatatgggtat 18814912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 34688163 - 34688280
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  34688163 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 34688262  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  34688263 tgatgtaaatatgggtat 34688280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 38844882 - 38844761
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||  || |||||||||||||| |||||||     
T  38844882 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcagtcaccgattctacttctttgcttgatttcatt 38844783  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    || | |||||||||||||||||    
T  38844782 tgatgtaaatatgggtatcaat 38844761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 31620265 - 31620382
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||||||||||||||||| |||||||     
T  31620265 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcagtgatgctacttctttgcttgatttcatt 31620364  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  31620365 tgatgtaaatatgggtat 31620382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 34692691 - 34692808
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||| |||||||     
T  34692691 tttggtgttcataatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcactgatgctacttctttgcttgatttcatt 34692790  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||| ||||    
T  34692791 tgatgtaaatatgagtat 34692808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 41829725 - 41829608
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| |||||||||||||||||||||  |||||||||||||||| |||||||     
T  41829725 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactggtgctacttctttgcttgatttcatt 41829626  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  41829625 tgatgtaaatatgggtat 41829608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 132
Target Start/End: Complemental strand, 10694498 - 10694375
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| || | |||||||||| ||||   |||||||||||||||| ||||||||    
T  10694498 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaatattatcttcattcaccggtgctacttctttgcttgatttcatc 10694399  T
Q  109 tgttttaaatatgggtatcaattc 132  Q
    |  | |||||||||||||||||||    
T  10694398 tcatgtaaatatgggtatcaattc 10694375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 52521292 - 52521175
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||  ||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||| ||| ||||||||||||| |||||||     
T  52521292 tttggtgttcacaatccgcactttcaacagatcaccttaactctaatcctagacaagattatcttcactcactgatgttacttctttgcttgatttcatt 52521193  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  52521192 tgatgtaaatatgggtat 52521175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 41962603 - 41962486
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||| | | |||||||| ||||||||||||||||||||| ||| ||||||||| ||| |||||||     
T  41962603 tttggtgttcatgatccgcactttcaacatatcacctttactttaatcctagactagattatcttcactcactgatgttacttctttacttgatttcatt 41962504  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  41962503 tgatgtaaatatgggtat 41962486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 47135980 - 47136040
Alignment:
Q  140 ggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47135980 ggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 47136040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 84 - 200
Target Start/End: Complemental strand, 51965451 - 51965335
Alignment:
Q  84 tgctacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctctttttt-ataattttggata 182  Q
    ||||||||||||| || |||||||||| | ||||||||||||||||| |       ||||||| || ||||||||| ||||||||| ||| |||||||||    
T  51965451 tgctacttctttgtttgatttcatctgatgtaaatatgggtatcaat-ccttttttggtaactctacaacaacaacactctttttttatacttttggata 51965353  T
Q  183 atatgtaatcataattca 200  Q
    ||||||||||||||||||    
T  51965352 atatgtaatcataattca 51965335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 17707444 - 17707384
Alignment:
Q  140 ggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||| ||||| |||||| |||||||||||||||||||||||||| |||| ||||||||    
T  17707444 ggtaactctataataacaacactcttttttataattttggataatatataataataattca 17707384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 10694325 - 10694290
Alignment:
Q  165 tttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||||||||||||||||||||||||||    
T  10694325 tttttataattttggataatatgtaatcataattca 10694290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 17709474 - 17709428
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatccta 59  Q
    ||||||||||||| |||||| ||||||||||||||| ||||||||||    
T  17709474 gtgttcatgatccacactttgaacagatcaccttaactctaatccta 17709428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 34692810 - 34692848
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  34692810 acaacaacactcttttttataattttggataatatgtaa 34692848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 31620384 - 31620422
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31620384 acaacaaaactcttttttataattttggataatatgtaa 31620422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 34688282 - 34688320
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34688282 acaacaaaactcttttttataattttggataatatgtaa 34688320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 41962483 - 41962445
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  41962483 acaacaaaactcttttttataattttggataatatgtaa 41962445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 52521173 - 52521135
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| |||||||||||||||||| |||||||||||    
T  52521173 acaacaacactcttttttataattttgaataatatgtaa 52521135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 41829597 - 41829568
Alignment:
Q  161 ctcttttttataattttggataatatgtaa 190  Q
    ||||||||||||||||||||||||||||||    
T  41829597 ctcttttttataattttggataatatgtaa 41829568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 131; Significance: 4e-68; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 32756081 - 32756271
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  32756081 tttggtgttcatgatccacactttcaacatatcactttaattctaatcctatactagattatcttcactcactgatgctacttctttgcttgatttcatc 32756180  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||| ||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  32756181 tgttttaaatatgagtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaatcataattca 32756271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 11597647 - 11597457
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||||| |||||||||||||||||| ||||||||    
T  11597647 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcttagacaagattatcttcactcaccaatgctacttctttgcttgatttcatc 11597548  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| ||||| |||||| ||||||||||||| ||||||||||||||||||||||||||    
T  11597547 tgatgtaaatatgggtatcaa-tctttttttggtaactctataagaacaacactcttttttataactttggataatatgtaatcataattca 11597457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 48520727 - 48520537
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| | || ||||||||||||||||| ||||||||||||||| || ||||||||    
T  48520727 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatccaagacaagattatcttcactcaccaatgctacttctttgtttgatttcatc 48520628  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48520627 tgatgtaaatatgggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 48520537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 54934373 - 54934563
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||  |||||||||||| || ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  54934373 tttggtgttcatgatatgcactttcaacatattaccttaattctaatcatatactagattatcttcactcactgatgctacttctttgcttgatttcatc 54934472  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||| ||||||| ||       ||||||| |||||||||||| || ||||||||||||||||||||||| ||||||| |||||    
T  54934473 tgttttaaatatgagtatcaa-tcattttttggtaactctataacaacaacactattttttataattttggataatatataatcatgattca 54934563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 55294468 - 55294278
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |||| |||||||||| || ||||||||    
T  55294468 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatcttcactcaccaatgttacttctttgtttgatttcatc 55294369  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |  | |||||||||||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55294368 ttatgtaaatatgggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 55294278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 52462614 - 52462428
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtt 112  Q
    |||||||||||||| |||||||||| |||||||||| |||||||||| ||| ||||||||||||||||| ||||||||||||||||| |||||||||| |    
T  52462614 gtgttcatgatccgtactttcaacatatcaccttaactctaatcctagactggattatcttcactcactgatgctacttctttgcttgatttcatctgat 52462515  T
Q  113 ttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
     |||||||| ||||||| ||       ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  52462514 gtaaatatgagtatcaa-tccttttttggtaactctataacagcaacactcttttttataattttggataatatgtaatcataattca 52462428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 54513353 - 54513542
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactag---attatcttcactcactaatgctacttctttgcttcatttcatct 109  Q
    ||||||||||||||||||||||||| |||||||||| |||||||||| |||||   |||||||||||||||  ||||||||||||||||| ||||||| |    
T  54513353 gtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattattatcttcactcaccgatgctacttctttgcttgatttcattt 54513452  T
Q  110 gttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    | | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  54513453 gatgtaaatatgggtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaatcataattca 54513542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 16342223 - 16342403
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||| ||||||||||||| |||||||     
T  16342223 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcaccgatgttacttctttgcttgatttcatt 16342322  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | ||||||||| |||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  16342323 tgatgtaaatatggctatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 16342403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 50741940 - 50742120
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||||||||||   ||||||||||||||||| |||||||     
T  50741940 tttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagactagattatcttcactcatcgatgctacttctttgcttgatttcatt 50742039  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  50742040 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttacaattttggataatatgtaa 50742120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 186
Target Start/End: Original strand, 51248871 - 51249047
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||| |||||||||| |||||||     
T  51248871 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctagttctttgcttgatttcatt 51248970  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatat 186  Q
    ||   |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  51248971 tgaggtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatat 51249047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 40824357 - 40824166
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||  | || ||||||||||||||||   ||||||||||||| ||| ||||||||    
T  40824357 tttggtgtttatgatccgcactttcaacagatcaccttaactctaatctcagacaagattatcttcactcatcgatgctacttctttacttgatttcatc 40824258  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||||         ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  40824257 tgatgtaaatatgggtatcaatcatttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 40824166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 8 - 186
Target Start/End: Complemental strand, 18741916 - 18741739
Alignment:
Q  8 gtttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||||| || ||||||| ||||||||||||  ||||||||||||||||| ||| |||    
T  18741916 gtttggtgttcatgatccgcacttttaacagatcaccttaactctaatcttagactagataatcttcactcaccgatgctacttctttgcttgattgcat 18741817  T
Q  108 ctgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatat 186  Q
     || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  18741816 ttgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatat 18741739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 49113632 - 49113812
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||| ||||| |||||||||| |||||||||| ||||||||||||||| ||||  ||||||||||||||||| |||||||     
T  49113632 tttggtgttcatgatccacacttgcaacaaatcaccttaactctaatcctagactagattatcttcaatcaccgatgctacttctttgcttgatttcatt 49113731  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  49113732 tgatgtaaatatgagtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 49113812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 8243058 - 8243260
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  8243058 tttggtgttcatgatccgcactttcaacagatcaccttaactccaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatc 8243157  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctctttt------------ttataattttggataatatgtaatcataa 196  Q
    || | |||||||| |||||||| |       ||||||| |||||||||||| || ||||            |||||||||||||||||||||||||||||    
T  8243158 tgatgtaaatatgagtatcaat-ccttttttggtaactctataacaacaacacttttttttttttttttttttataattttggataatatgtaatcataa 8243256  T
Q  197 ttca 200  Q
    ||||    
T  8243257 ttca 8243260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 21699274 - 21699094
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||| ||||||||||||| || |||||||||| ||||||| || ||||||||||||||||||||  ||||||||||||||||  |||||||     
T  21699274 tttggtgttcataatccgcactttcagcatatcaccttaactctaatcttagactagattatcttcactcaccgatgctacttctttgctcgatttcatt 21699175  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||        |||||||||||||||||||  |||||||||||||||||||||||||||||    
T  21699174 tgatgtaaatatgggtatcaa-tcattttttcgtaactttataacaacaacattcttttttataattttggataatatgtaa 21699094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 23194756 - 23194950
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||  |||||||||| | |||||||||||||||||   ||| ||||||||||||| |||||||     
T  23194756 tttggtgttcatgatccgcactttcaacagatcaccttatctctaatcctagattagattatcttcactcatcgatgttacttctttgcttaatttcatt 23194855  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctctttttta----taattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| |||||||| ||| || |||||||    ||||||||||||||||||||||||||||||    
T  23194856 tgatgtaaatatgggtatcaa-tccttttttggtaactctataacaaaaacacttttttttatttgtaattttggataatatgtaatcataattca 23194950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 50770934 - 50770817
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||     
T  50770934 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcgtagactagattatcttcactcactaatgctacttctttgcttgatttcatt 50770835  T
Q  109 tgttttaaatatgggtat 126  Q
    || | | |||||||||||    
T  50770834 tgatgtcaatatgggtat 50770817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 35087525 - 35087410
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||  ||||||     
T  35087525 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcactgatgctacttctttgctt--tttcatt 35087428  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  35087427 tgatgtaaatatgggtat 35087410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 31368702 - 31368604
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    ||||||||||||||||| ||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||    
T  31368702 tttggtgttcatgatccacactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcat 31368604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 52853131 - 52852962
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||| ||||||| ||||           ||||||||||||||||  ||||||||||||||||| |||||||     
T  52853131 tttggtgttcatgatccgcactttcaacagattaccttaactcta-----------gattatcttcactcaccgatgctacttctttgcttgatttcatt 52853043  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| |||||||| |        ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  52853042 tgatgtaaatatgagtatcaat-cattttttagtaactttataacaacaacactcttttttataattttggataatatgtaa 52852962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 6103813 - 6103700
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| | |||||||| | |||||||| ||||||||||||||||||||| ||| ||||||||||||| |||||||     
T  6103813 tttggtgttcatgatccgcactttcaacataccaccttaactttaatcctagactagattatcttcactcactgatgttacttctttgcttgatttcatt 6103714  T
Q  109 tgttttaaatatgg 122  Q
    || | |||||||||    
T  6103713 tgatgtaaatatgg 6103700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 53 - 190
Target Start/End: Complemental strand, 54648534 - 54648398
Alignment:
Q  53 aatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttataa 152  Q
    ||||||| ||||||||||||||| ||||  ||||||||||||||||| ||||||| || | |||||||||||||||| ||       ||||||| |||||    
T  54648534 aatcctagactagattatcttcattcaccgatgctacttctttgcttgatttcatttgatgtaaatatgggtatcaa-tcattttttggtaactctataa 54648436  T
Q  153 caacaacgctcttttttataattttggataatatgtaa 190  Q
     |||||| ||||||||||||||||||||||||||||||    
T  54648435 taacaacactcttttttataattttggataatatgtaa 54648398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 9 - 127
Target Start/End: Original strand, 48977251 - 48977364
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||| ||||||||||||||||||||| | ||||||||     ||||||||||||||||| || |||||||||||||| |||||||     
T  48977251 tttggtgttcatgatccgtactttcaacagatcaccttaactataatccta-----gattatcttcactcactgattctacttctttgcttgatttcatt 48977345  T
Q  109 tgttttaaatatgggtatc 127  Q
    || | ||||||||||||||    
T  48977346 tgatgtaaatatgggtatc 48977364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 30 - 130
Target Start/End: Complemental strand, 2843589 - 2843489
Alignment:
Q  30 tttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaa 129  Q
    ||||| ||||||||||||| |||||||||| |||||||| |||||||||||  ||||||||||||||||| ||||||||||   ||||||||||||||||    
T  2843589 tttcagcagatcaccttaactctaatcctagactagattgtcttcactcaccgatgctacttctttgcttgatttcatctgaggtaaatatgggtatcaa 2843490  T
Q  130 t 130  Q
    |    
T  2843489 t 2843489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 68 - 200
Target Start/End: Original strand, 52842206 - 52842340
Alignment:
Q  68 tatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttataaca---acaacgctct 164  Q
    |||||||||||||| |||||||||||||| || |||||||||  | ||||||||||||||||| |       ||||||| || ||||   ||||||||||    
T  52842206 tatcttcactcactgatgctacttctttgtttgatttcatcttatgtaaatatgggtatcaat-ccttttttggtaactctacaacaacaacaacgctct 52842304  T
Q  165 tttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||||||||||||||||||||||||||    
T  52842305 tttttataattttggataatatgtaatcataattca 52842340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 61 - 200
Target Start/End: Original strand, 39092942 - 39093083
Alignment:
Q  61 actagattatcttcactcactaatgc----tacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaac 156  Q
    ||||||||||||||||||||| ||      |||||||||| || |||||||||| | |||||||||||||||||          |||||| || ||||||    
T  39092942 actagattatcttcactcactgattgatattacttctttgtttgatttcatctgatgtaaatatgggtatcaat--cttttttcgtaactctacaacaac 39093039  T
Q  157 aacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||    
T  39093040 aacactcttttttataattttggataatatgtaatcataattca 39093083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 140 - 190
Target Start/End: Original strand, 48977614 - 48977664
Alignment:
Q  140 ggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  48977614 ggtaactctataacaacaacactcttttttataattttggataatatgtaa 48977664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 50802879 - 50802789
Alignment:
Q  17 tcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    |||||||||| |||||||||| |||||||||| ||||||| || | ||||||||||||||||||  ||| ||||| |||| || |||||||    
T  50802879 tcatgatccgtactttcaacaaatcaccttaactctaatcttagattagattatcttcactcaccgatgttacttatttgtttgatttcat 50802789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 50872998 - 50873088
Alignment:
Q  17 tcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    |||||||||| |||||||||| |||||||||| ||||||| || | ||||||||||||||||||  ||| ||||| |||| || |||||||    
T  50872998 tcatgatccgtactttcaacaaatcaccttaactctaatcttagattagattatcttcactcaccgatgttacttatttgtttgatttcat 50873088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 190
Target Start/End: Complemental strand, 19406894 - 19406844
Alignment:
Q  140 ggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    ||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  19406894 ggtaactctattacaacaacactcttttttataattttggataatatgtaa 19406844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 50770815 - 50770777
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  50770815 acaacaacactcttttttataattttggataatatgtaa 50770777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 31368584 - 31368546
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  31368584 acaacaaaactcttttttataattttggataatatgtaa 31368546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 35087408 - 35087370
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    ||||||||  |||||||||||||||||||||||||||||    
T  35087408 acaacaacattcttttttataattttggataatatgtaa 35087370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 200
Target Start/End: Complemental strand, 42827047 - 42826857
Alignment:
Q  10 ttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatct 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  42827047 ttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactgatgctacttctttgcttgatttcatct 42826948  T
Q  110 gttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaatcataattca 200  Q
     ||||||||||||||||||| ||       ||||||| |||||||||||| ||| ||||||||||||||| ||||| |||||||||||||||    
T  42826947 attttaaatatgggtatcaa-tctttttttggtaactctataacaacaacactctttttttataattttgaataatgtgtaatcataattca 42826857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 27734740 - 27734550
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||  |||||||||||||| || ||||||||    
T  27734740 tttggtattcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatcttcactcaccgatgctacttctttgtttgatttcatc 27734641  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27734640 tgatgtaaatatgggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 27734550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 9149896 - 9150086
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||||||| || |||||||||||||||||  |||||||||||||| || ||||||||    
T  9149896 tttggtgttcatgatctgcactttcaacataccaccttaattctaatcctagacaagattatcttcactcaccgatgctacttctttgtttgatttcatc 9149995  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9149996 tgatgtaaatatgggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 9150086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 23299414 - 23299224
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||||||||||||  ||||||||||||| ||| |||||||     
T  23299414 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatcttcactcaccgatgctacttctttacttgatttcatg 23299315  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||||||    
T  23299314 tgatgtaaatatgggtatcaa-tccttttttggtaactctacaacaagaacactcttttttataattttggataatatgtaatcataattca 23299224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 11500431 - 11500611
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||| |||||| |||||| ||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  11500431 tttggtgttcatgatccgcattttcaatagatcaacttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 11500530  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  11500531 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 11500611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 42688126 - 42688306
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  42688126 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctaaactagattatcttcactcaccgatgctacttctttgcttgatttcatt 42688225  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| | |||||||||||||||| |||||||||||    
T  42688226 tgatgtaaatatgtgtatcaa-tcattttttggtaactctataacaacaacacccttttttataattttgaataatatgtaa 42688306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 33638365 - 33638175
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||  ||| ||||||||||||| ||||||||    
T  33638365 tttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagacaagattatcttcactcaccgatgttacttctttgcttaatttcatc 33638266  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||| || |||||| ||       | ||||| || |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  33638265 tgatgtaaatacggatatcaa-tccttttttgctaactctacaacaacgacactcttttttataattttggataatatgtaatcataattca 33638175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 47175034 - 47175222
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||||   ||||||||||||||||| ||||||||    
T  47175034 tttggtgttcatgatctgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcatcgatgctacttctttgcttgatttcatc 47175133  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||| | ||||| | ||       ||||||  |  ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  47175134 tgatgtaaatacgagtatcta-tccttttttggtaac--tccaacaacaaaactcttttttataattttggataatatgtaatcataattca 47175222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 42918435 - 42918625
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||  |||||||||||||| |||||||| |||||||||| || |||||||||||||||||  ||||||||| ||| ||| ||||||||    
T  42918435 tttggtgttcatgatgtgcactttcaacagaccaccttaactctaatcctagacaagattatcttcactcaccgatgctactttttttcttgatttcatc 42918534  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaatcataattc 199  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| ||| ||||||||||||||||||||| ||||||||||||||    
T  42918535 tgatgtaaatatgagtatcaa-tctttttttggtaactctataacaacaacactctttttttataattttggataatgtgtaatcataattc 42918625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 13 - 126
Target Start/End: Original strand, 14309430 - 14309543
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtt 112  Q
    ||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || |    
T  14309430 gtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactaatgctacttctttgcttgatttcatttgat 14309529  T
Q  113 ttaaatatgggtat 126  Q
     |||||||||||||    
T  14309530 gtaaatatgggtat 14309543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 19521721 - 19521900
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||| ||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  19521721 tttggtgttcatgatccgcactttcaacggatcaccttaactctaattctagactagattatcttcactcacagatgctacttctttgcttgatttcatt 19521820  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||  ||| || |||||         ||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  19521821 tgatgtaa--atgtgtttcaatcatttttttggtaactctataacaataacactcttttttataattttggataatatgtaa 19521900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 17470303 - 17470483
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||| || |||||||     
T  17470303 tttggtcttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccaatgttacttctttgtttgatttcatt 17470402  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |  | | |||||||||||||| ||         |||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  17470403 ttatgtgaatatgggtatcaa-tcattttttaataactcaataacaacaacactcttttttataattttggataatatgtaa 17470483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 17482920 - 17483100
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||||||||||| | |||| ||| |||||||||| |||||||||||||||||||   ||||||||| ||||||| |||||||     
T  17482920 tttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactcatcgatgctacttatttgcttgatttcatt 17483019  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  17483020 tgatgtaaatatgagtatcaa-tcattttttggtaactctataacaacaacattcttttttataattttggataatatgtaa 17483100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 17570294 - 17570114
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||||||||||| | |||| ||| |||||||||| |||||||||||||||||||   ||||||||| ||||||| |||||||     
T  17570294 tttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactcatcgatgctacttatttgcttgatttcatt 17570195  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  17570194 tgatgtaaatatgagtatcaa-tcattttttggtaactctataacaacaacattcttttttataattttggataatatgtaa 17570114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 17582911 - 17582731
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||| || |||||||     
T  17582911 tttggtcttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccaatgttacttctttgtttgatttcatt 17582812  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |  | | |||||||||||||| ||         |||||  ||||||||||| ||||||||||||||||||||||||||||||    
T  17582811 ttatgtgaatatgggtatcaa-tcattttttaataactcaataacaacaacactcttttttataattttggataatatgtaa 17582731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 17478485 - 17478665
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||||||||||| | |||| ||| |||||||||| |||||||||||||||||||   ||||||||| ||||||| |||||||     
T  17478485 tttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactcatcgatgctacttatttgcttgatttcatt 17478584  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  17478585 tgatgtaaatatgagtatcaa-tcattttttggtaactctataacaacaacattcttttttacaattttggataatatgtaa 17478665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 17574729 - 17574549
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||||||||||| | |||| ||| |||||||||| |||||||||||||||||||   ||||||||| ||||||| |||||||     
T  17574729 tttggtattcatgatccgcactttcaacaaaacaccataactctaatcctagactagattatcttcactcatcgatgctacttatttgcttgatttcatt 17574630  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| ||||||||||||  ||||||||| |||||||||||||||||||    
T  17574629 tgatgtaaatatgagtatcaa-tcattttttggtaactctataacaacaacattcttttttacaattttggataatatgtaa 17574549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 8925601 - 8925484
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| |||||||||| | |||||||| ||||||||| ||||||||||| ||||||||||||||||| |||||||     
T  8925601 tttggtgttcatgatccacactttcaacatatcaccttaactttaatcctagactagattagcttcactcactgatgctacttctttgcttgatttcatt 8925502  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  8925501 tgatgtaaatatgggtat 8925484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 23766130 - 23766013
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| ||||| ||||   |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  23766130 tttggtgttcatgatccgcactttcaacatatcactttaacattaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 23766031  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  23766030 tgatgtaaatatgggtat 23766013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 33031432 - 33031609
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| |||||||||||| |||||||||| ||||||| |  |||  |||||||||||||||  ||||||||| ||||||| |||||||     
T  33031432 tttggtgttcatgatctgcactttcaacatatcaccttaactctaatcttgaact--attatcttcactcaccgatgctacttatttgcttgatttcatt 33031529  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||       ||||||| |||||||| ||| || |||||||||||||||||||||||||||    
T  33031530 tgatgtcaatatgggtatcaa-tcattttttggtaactctataacaataacact-ttttttataattttggataatatgtaa 33031609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 13 - 190
Target Start/End: Original strand, 5963272 - 5963437
Alignment:
Q  13 gtgttcatgatccgcac-tttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgt 111  Q
    ||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||||| |||  ||||||||| ||||||| |||||          
T  5963272 gtgttcatgatccgcacctttcaacatatcaccttaactctaatcctatactagattatcttcac-cac-gatgctacttttttgcttaatttc------ 5963363  T
Q  112 tttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
         ||||||||||||||         ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  5963364 -----atatgggtatcaatcatttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 5963437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 107
Target Start/End: Complemental strand, 41262070 - 41261972
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    |||| |||| ||||||| ||||||||||||||||| |||| |||||||||| ||||||||||||||||||||  ||| |  |||||||||| |||||||    
T  41262070 tttgatgtttatgatccacactttcaacagatcactttaactctaatcctagactagattatcttcactcaccgatgttgtttctttgcttgatttcat 41261972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 8925482 - 8925444
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  8925482 acaacaaaactcttttttataattttggataatatgtaa 8925444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 190
Target Start/End: Original strand, 14309554 - 14309583
Alignment:
Q  161 ctcttttttataattttggataatatgtaa 190  Q
    ||||||||||||||||||||||||||||||    
T  14309554 ctcttttttataattttggataatatgtaa 14309583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 6e-64; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 41781379 - 41781566
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcc-tatactagattatcttcactcactaatgctacttctttgcttcatttcatctgt 111  Q
    ||||||||||||||||||||||||| |||||||||| |||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  41781379 gtgttcatgatccgcactttcaacatatcaccttaactctaatccctagactagattatcttcactcactgatgctacttctttgcttgatttcatctgt 41781478  T
Q  112 tttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |||||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41781479 tttaaatatgggtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaatcataattca 41781566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 20995582 - 20995392
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||  |||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  20995582 tttggtgttcatgatcttcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 20995483  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  20995482 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactctattttataattttggataatatgtaatcataattca 20995392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 33930348 - 33930539
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||| ||||||| |||||||||||| ||||| |||||||||||||||||||||||| || |||||| ||||||| ||||||||    
T  33930348 tttggtattcatgatccgcacgttcaacatatcaccttaattttaatcatatactagattatcttcactcactgattctacttatttgcttgatttcatc 33930447  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||||||||||| ||       ||||||| |||||||||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  33930448 tgttttaaatatgggtatcaa-tccttttttggtaactctataacaacaacactctttttttataattttgaataatatgtaatcataattca 33930539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 3150289 - 3150113
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  3150289 tttggtgttcatgatctgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 3150190  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatat 186  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  3150189 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatat 3150113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 27066406 - 27066586
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||  |||||| |||||||||| |||||||     
T  27066406 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctatactagattatcttcactcaccgatgctatttctttgcttgatttcatt 27066505  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | ||||||||| |||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  27066506 tgatgtaaatatggctatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 27066586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 21030643 - 21030823
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  |||||| |||||| ||| ||||||||    
T  21030643 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctaattctttacttgatttcatc 21030742  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | ||||||||| |||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||||||    
T  21030743 tgatgtaaatatggctatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaa 21030823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 1851645 - 1851465
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||||||| |||| |||||||||||||||  ||||||||| |||| || |||||||     
T  1851645 tttggtgttcatgatccgcattttcaacagatcaccttaactctaatcctagactacattatcttcactcaccgatgctacttgtttgtttgatttcatt 1851546  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  1851545 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 1851465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 3029289 - 3029468
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||| ||||||||||||| |||||||     
T  3029289 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgttacttctttgcttgatttcat- 3029387  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |  | |||||||||||||||| ||       ||||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  3029388 ttatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacattcttttttataattttggataatatgtaa 3029468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 17997102 - 17997282
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||| |||| |||||||||| || |||||||     
T  17997102 tttggtgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccaatgatacttctttgtttgatttcatt 17997201  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||| ||||||||||    
T  17997202 tgatgtgaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttgggtaatatgtaa 17997282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 19448529 - 19448709
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||| |||||| ||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||| ||| |||||||     
T  19448529 tttggtgtttatgatctgcactttcagcagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttacttgatttcatt 19448628  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  19448629 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 19448709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 35539609 - 35539429
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| || ||||||  ||||| ||||||||||| |||||||     
T  35539609 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattaactcaccgatgctccttctttgcttgatttcatt 35539510  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| || |||||||||||||||||||||||||||    
T  35539509 tgatgtaaatatgggtatcaa-tccttttttggtaactctataacaacaacacttttttttataattttggataatatgtaa 35539429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 33706459 - 33706269
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||||||||| || |||||||||||| ||||  |||||||||||||| || ||||||||    
T  33706459 tttggtgttcatgattcgcaatttcaacagatcaccttaactctaatcctagacaagattatcttcaatcacatatgctacttctttgtttgatttcatc 33706360  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |  | |||||||||||||||| ||       ||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  33706359 taatgtaaatatgggtatcaa-tcattttttggtaactctgcaacaacaacactcttttttataattttggataatatgtaatcataattca 33706269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 20350469 - 20350649
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| ||||| |||| |||||||||| |||||||||||||||||||   ||||||||||||||||| |||||||     
T  20350469 tttggtgttcatgatccacactttcaacaaatcactttaactctaatcctacactagattatcttcactcatcgatgctacttctttgcttgatttcatt 20350568  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  20350569 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttacaattttggataatatgtaa 20350649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 38934996 - 38935176
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||| |||||||||| || | |||||     
T  38934996 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcacatatgttacttctttgttttacttcatt 38935095  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  38935096 tgatgtgaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 38935176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 7286212 - 7286328
Alignment:
Q  10 ttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatct 109  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| |    
T  7286212 ttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcattt 7286311  T
Q  110 gttttaaatatgggtat 126  Q
    | | |||||||||||||    
T  7286312 gatgtaaatatgggtat 7286328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 34374069 - 34373888
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||| |||||||||  ||||||||||||||||| |||||||     
T  34374069 tttggtgttcatgatccgtactttcaacagatcaccttaactctaattctagactagattatattcactcaccgatgctacttctttgcttgatttcatt 34373970  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| ||||||||  || ||| |||||||||||||||||||||||||||    
T  34373969 tgatgtaaatatgggtatcaa-tccctttttggtaactctataacaaggacactctttttttataattttggataatatgtaa 34373888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 130
Target Start/End: Complemental strand, 12420279 - 12420161
Alignment:
Q  12 ggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgt 111  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||||||||||| ||| ||||||||||||| ||||||||||     
T  12420279 ggtgttcatgatccacactttcaacagatcaccttaactctaatcctagacaagattatcttcactcactgatgttacttctttgcttgatttcatctga 12420180  T
Q  112 tttaaatatgggtatcaat 130  Q
    | |||||||||||||||||    
T  12420179 tgtaaatatgggtatcaat 12420161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 4882806 - 4882927
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||| |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||||||| |||||||||||||||||| |||||||     
T  4882806 tttgatgttcatgatccacactttcaacagatcaccttaactctaatcctagactagattattttcactcaccaatgctacttctttgcttgatttcatt 4882905  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    || | |||||||||||||||||    
T  4882906 tgatgtaaatatgggtatcaat 4882927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 33610825 - 33610708
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||| | ||||||||||||||||| |||||||     
T  33610825 tttggtgttcataatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcattgatgctacttctttgcttgatttcatt 33610726  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  33610725 tgatgtaaatatgggtat 33610708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 20758479 - 20758659
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||| ||||||||||||| ||||| | |||||||| ||||||||||||||||||||  ||| |||||||||| || |||||||     
T  20758479 tttggtgttcatgattcgcattttcaacagatcatcttaactataatcctaaactagattatcttcactcaccgatgttacttctttgtttgatttcatt 20758578  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||        |||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  20758579 tgatgtgaatatgggtatcaa-tcattttttagtaactctataacaacaacactcttttttataattttggattatatgtaa 20758659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 26320756 - 26320645
Alignment:
Q  15 gttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtttt 114  Q
    ||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| || | |    
T  26320756 gttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatttgatgt 26320657  T
Q  115 aaatatgggtat 126  Q
    ||||||||||||    
T  26320656 aaatatgggtat 26320645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 9 - 181
Target Start/End: Complemental strand, 3396821 - 3396650
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||||| |||||||| ||||||||||   ||||||||||||||||| |||||||     
T  3396821 tttgatgttcatgatccgcactttcaacatatcaccttaactctaatcctaaactagattttcttcactcatctatgctacttctttgcttgatttcatt 3396722  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggat 181  Q
    || | ||||||||| |||||| ||       ||||||| ||| |||||||| ||||||||||| | |||||||    
T  3396721 tgatgtaaatatggatatcaa-tcattttttggtaactctattacaacaacactcttttttattagtttggat 3396650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 30689847 - 30689964
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| |||||||||| | |||| ||| |||||||||| |||||||||| ||||||||||||||||| |||||||     
T  30689847 tttggtgttcatgatccacactttcaacatatcaccttaactttaattctagactagattattttcactcactgatgctacttctttgcttgatttcatt 30689946  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  30689947 tgatgtaaatatgggtat 30689964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 2195699 - 2195797
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||||||||| ||||||| |||||||    
T  2195699 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcattgatgctacttgtttgcttgatttcat 2195797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 83 - 200
Target Start/End: Complemental strand, 287341 - 287225
Alignment:
Q  83 atgctacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggata 182  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||||| |       ||||||| || ||||||||| ||||||||||||||||||||||    
T  287341 atgctacttctttgcttgatttcatctgatgtaaatatgggtatcaat-ccttttttggtaactctacaacaacaacactcttttttataattttggata 287243  T
Q  183 atatgtaatcataattca 200  Q
    ||||||||||||||||||    
T  287242 atatgtaatcataattca 287225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 10512050 - 10511871
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||| ||||||  | | ||||||||||||| |||||||     
T  10512050 tttggtattcatgatccgcactttcaacagattaccttaactctaatcctagactagattatctttactcaccgaagttacttctttgcttgatttcatt 10511951  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    ||   ||| |||| ||||||| ||       ||||||  || ||||||| | ||| ||||||||||||||||||||||||||    
T  10511950 tgaagtaattatgagtatcaa-tccttttttggtaaccctacaacaacatcactc-tttttataattttggataatatgtaa 10511871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 7286330 - 7286368
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7286330 acaacaacactcttttttataattttggataatatgtaa 7286368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 33610706 - 33610668
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  33610706 acaacaacactcttttttataattttggataatatgtaa 33610668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 200
Target Start/End: Complemental strand, 12420107 - 12420077
Alignment:
Q  170 ataattttggataatatgtaatcataattca 200  Q
    |||||||||||||||||||||||||||||||    
T  12420107 ataattttggataatatgtaatcataattca 12420077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 190
Target Start/End: Complemental strand, 26320634 - 26320605
Alignment:
Q  161 ctcttttttataattttggataatatgtaa 190  Q
    ||||||||||||||||||||||||||||||    
T  26320634 ctcttttttataattttggataatatgtaa 26320605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 122; Significance: 9e-63; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 41983935 - 41983745
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| ||||||||    
T  41983935 tttggtgttcatgatccgctctttcaacagatcaccttaactctaatcctaaactagattatcttcactcaccgatgctacttctttgcttgatttcatc 41983836  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | ||||||||| |||||||||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  41983835 tgatgtaaatatggatatcaattc-ttttttggtaactctataacaacaacactcttttttataattttggataatatgtaatcataattca 41983745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 7847612 - 7847803
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||| ||||||      
T  7847612 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatcttcactcactgatgctacttctttacttgatttcaat 7847711  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||||||||||| ||       ||||||| |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||    
T  7847712 tgttttaaatatgggtatcaa-tcctttcttggtaactctataacaacaacactctttttttataattttggataatatctaatcataattca 7847803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 33502703 - 33502523
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  33502703 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 33502604  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | ||||||||| |||||| ||       | ||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  33502603 tgatgtaaatatggatatcaa-tcattttttgataactctataacaacaacactcttttttataattttggataatatgtaa 33502523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 17740629 - 17740819
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||||| |||||||| |||||||||| |  | |||||||||||||||  ||||||||||||||||| ||||||||    
T  17740629 tttggtgttcatgatccgcactttcaacagaccaccttaactctaatcctagaaaatattatcttcactcaccgatgctacttctttgcttgatttcatc 17740728  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||||||       || |||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  17740729 tgatgtaaatatgggtatcaattc-ttttttggcaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 17740819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 19831099 - 19830919
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  19831099 tttggtgttcatgatccacactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 19831000  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  19830999 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacattcttttttataattttggataatatgtaa 19830919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 35495303 - 35495123
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||| |||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  35495303 tttgatgttcatgatccgcactttcaacatatcaccttaactctaatcctacactagattatcttcactcaccgatgctacttctttgcttgatttcatt 35495204  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  35495203 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 35495123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 47557128 - 47556938
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||| ||||||||||||||||||| |||||||||| || |||||||||||| ||||  |||||||||||||| || ||||||||    
T  47557128 tttggtgttcatgattcgcaatttcaacagatcaccttaactctaatcctagacaagattatcttcaatcaccgatgctacttctttgtttgatttcatc 47557029  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| |  ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  47557028 tgatgtaaatatgggtatcaa-tccttttttggtaactctgcaacaacaacactcttttttataattttggataatatgtaatcataattca 47556938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 17699764 - 17699944
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  17699764 tttggtgttcatgatccgcactttcaacagatcacattaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 17699863  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||| ||||| ||       ||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  17699864 tgatgtaaatatgggcatcaa-tcattttttggtaactctataacaacgtcactcttttttataattttggataatatgtaa 17699944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 186
Target Start/End: Complemental strand, 37701299 - 37701123
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||| |||||||||| |||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  37701299 tttggtgttcatgatccgtactttcaacatatcaccttaactctaatcctaaactagattatcttcactcaccgatgctacttctttgcttgatttcatt 37701200  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatat 186  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| || |||| ||||||||||||||||||    
T  37701199 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactattttctataattttggataatat 37701123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 53342998 - 53343177
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  53342998 tttggtgttcatgatccacactttcaacaaatcaccttaactctaatcctaaactagattatcttcactcaccgatgctacttctttgcttgatttcatt 53343097  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| ||| ||||||||||||||||||||||||||    
T  53343098 tgatgtaaatatgtgtatcaa-tcattttttggtaactctataacaacaacactc-tttttataattttggataatatgtaa 53343177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 7643494 - 7643314
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||  ||||||||| ||||||| |||||||     
T  7643494 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttttttgcttgatttcatt 7643395  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |  | |||||||| ||||||| ||       ||||||| |||||||||||| |||||||||| |||||||| ||||||||||    
T  7643394 ttatgtaaatatgtgtatcaa-tcattttttggtaactctataacaacaacactcttttttacaattttggttaatatgtaa 7643314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 39742696 - 39742517
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||| |||||||||| | ||||||||||| |||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  39742696 tttgatgttcatgatacacactttcaacatatcaccttaactctaatcatagactagattatcttcactcactgatgctacttctttgcttgatttcat- 39742598  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |  | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  39742597 ttatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 39742517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 55998414 - 55998234
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||| |||| || ||| || ||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  55998414 tttggtgttgatgacccacacgttgaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 55998315  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | ||||||||||||||||  |       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  55998314 tgatgtaaatatgggtatcaa-acattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 55998234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 28973650 - 28973831
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||||||| |||| ||||| |||||||||  ||||||||||||| ||| ||||| |     
T  28973650 tttggtgttcatgatctgcactttcaacagatcaccttaactctaatcctagactaaattatattcactcaccgatgctacttctttacttgatttcttt 28973749  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||| |||||||||||||||||||||||||||    
T  28973750 tgatgtaaatatgggtatcaa-tcctttttcggtaactctataacaacaacactctttttttataattttggataatatgtaa 28973831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 2776865 - 2777045
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||| | ||||||||||||||||||||  ||| || ||||||| || |||||||     
T  2776865 tttggtgttcatgattcgcactttcaacagatcaccttaactctaatcccagactagattatcttcactcaccgatgttatttctttgtttgatttcatt 2776964  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||        |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  2776965 tgatgtgaatatgggtatcaa-tcattttttagtaactctataacaacaacactcttttttataattttggataatatgtaa 2777045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 13628643 - 13628823
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| || |||||||| |||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  13628643 tttggtgttcatgattcgtactttcaatagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 13628742  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    ||   |||||||||||| ||| ||       ||||||| |||| |||||||  |||||||||||||||||||||||||||||    
T  13628743 tgacgtaaatatgggtagcaa-tcattttttggtaactctatatcaacaacaatcttttttataattttggataatatgtaa 13628823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 36857656 - 36857836
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||  || | ||||||||| ||||||||||||||||||||||||||| |||||||     
T  36857656 tttggtgttcatgatgcgcactttcaacagatcaccttaactctaattttagagtagattatcctcactcactaatgctacttctttgcttgatttcatt 36857755  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       || ||||  || |||||||| ||||||||||||||||||||||||||||||    
T  36857756 tgatgtaaatatgagtatcaa-tcatttttcggcaactcaattacaacaacactcttttttataattttggataatatgtaa 36857836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 200
Target Start/End: Original strand, 40622739 - 40622926
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| ||||||||||||| ||| ||||||||||||||| |||||||||| || |||||||||||||||||  ||||||||||||||||| ||||||||    
T  40622739 tttggtcttcatgatccgcatttttaacagatcaccttaactctaatcctagacaagattatcttcactcaccgatgctacttctttgcttgatttcatc 40622838  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |  | |||||||||||||||| ||       ||||||| || ||||||||| |||||||||    |||||||||||||||||||||||||||    
T  40622839 taatgtaaatatgggtatcaa-tccttttttggtaactctacaacaacaacactctttttt---tttttggataatatgtaatcataattca 40622926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 14 - 190
Target Start/End: Complemental strand, 22115748 - 22115573
Alignment:
Q  14 tgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttt 113  Q
    |||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||| |  ||| |||||||||| || ||||||| || |     
T  22115748 tgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatcttcactctccgatgttacttctttgtttgatttcatttgatg 22115649  T
Q  114 taaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    | |||||||||||||| ||        |||||| ||||||| |||| ||||||||||||||||||||||||||||||    
T  22115648 tgaatatgggtatcaa-tcattttttagtaactctataacaccaacactcttttttataattttggataatatgtaa 22115573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 38008849 - 38009031
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||  ||||||||||||||||| |||||||     
T  38008849 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagacaagattatcttcactcaccgatgctacttctttgcttgatttcatt 38008948  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgc--tcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| |  | |||||||| |||||| |||||||||||    
T  38008949 tgatgtaaatatgtgtatcaa-tcattttttggtaactctataacaacaacacttttttttttattattttgcataatatgtaa 38009031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 5271977 - 5271860
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| |||| ||||||||||||||||||||||||||||||| || |||||||     
T  5271977 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactaaattatcttcactcactaatgctacttctttgtttgatttcatt 5271878  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  5271877 tgatgtaaatatgggtat 5271860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 8531406 - 8531527
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| || || |||||||||||||||||  ||||||||| ||||||| ||||||||    
T  8531406 tttggtgttcatgatccgcactttcaatagatcaccttaactctaatcatagacaagattatcttcactcaccgatgctacttttttgcttgatttcatc 8531505  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    || | |||||||| ||||||||    
T  8531506 tgatgtaaatatgtgtatcaat 8531527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 14829213 - 14829096
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||     
T  14829213 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcagtgatgttacttctttgcttgatttcatt 14829114  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  14829113 tgatgtaaatatgggtat 14829096  T

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Target: chr4; HSP #24
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 36515042 - 36514862
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| | |||||| ||||||||||||||| | |||||||| ||||||||||||||||||||  ||| |||||||||| || |||||||     
T  36515042 tttggtgttcatgattcacacttttaacagatcaccttaactttaatcctagactagattatcttcactcaccgatgttacttctttgtttgatttcatt 36514943  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||| ||||||| ||        |||||| |||||||||||| ||||||||||||||||||||| ||||||||    
T  36514942 tgatgtgaatatgagtatcaa-tcattttttagtaactctataacaacaacactcttttttataattttggattatatgtaa 36514862  T

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Target: chr4; HSP #25
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 23479488 - 23479605
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| |||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||| ||||||||| |||||||     
T  23479488 tttggtgttcatgatctgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacgtctttgcttgatttcatt 23479587  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||| ||||    
T  23479588 tgatgtaaatatgagtat 23479605  T

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Target: chr4; HSP #26
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 34056265 - 34056148
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| |||||||||| | |||||||| || ||||||| |||||||| ||||||||||| ||||||| |||||||     
T  34056265 tttggtgttcatgatccacactttcaacaaatcaccttaactataatcctagacaagattatattcactcaataatgctacttatttgcttgatttcatt 34056166  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  34056165 tgatgtaaatatgggtat 34056148  T

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Target: chr4; HSP #27
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 54331345 - 54331273
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcact 81  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  54331345 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcact 54331273  T

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Target: chr4; HSP #28
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 61 - 190
Target Start/End: Complemental strand, 19109407 - 19109279
Alignment:
Q  61 actagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacg 160  Q
    ||||| ||||||||||| |   ||||||||||||||||| ||||||| || | |||||||| |||||||| |       | ||||| ||||||||||||     
T  19109407 actaggttatcttcactaatcgatgctacttctttgcttgatttcatttgatgtaaatatgagtatcaat-cattttttgttaactctataacaacaaca 19109309  T
Q  161 ctcttttttataattttggataatatgtaa 190  Q
    |||||||||| |||||||||||||||||||    
T  19109308 ctcttttttacaattttggataatatgtaa 19109279  T

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Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 21353738 - 21353787
Alignment:
Q  141 gtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||| |||||||||||| || |||||||||||||||||||||||||||    
T  21353738 gtaactctataacaacaacacttttttttataattttggataatatgtaa 21353787  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 34056146 - 34056108
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34056146 acaacaaaactcttttttataattttggataatatgtaa 34056108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 119; Significance: 6e-61; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 22946475 - 22946285
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||| |||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| |||||||     
T  22946475 tttggtattcatgatccgcacgttcaacatatcaccttaattctaatcatatactagattatcttcactcactgatgctacttatttgcttgatttcatt 22946376  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||||||||||||||| ||       ||||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  22946375 tgttttaaatatgggtatcaa-tccttttttggtaactctataacaacaacgttcttttttataattttgaataatatgtaatcataattca 22946285  T

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Target: chr8; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 44600013 - 44600193
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||||||||||||||||| |||||||     
T  44600013 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcaccgatgctacttctttgcttgatttcatt 44600112  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  44600113 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 44600193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 44382475 - 44382285
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||| |||||||||  ||||||||||||| ||| ||||||||    
T  44382475 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagacaagattatattcactcaccgatgctacttctttacttgatttcatc 44382376  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |  | |||||||||||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  44382375 ttatgtaaatatgggtatcaa-tcattttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 44382285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 22332402 - 22332222
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||| ||||  ||||||||||||||||| |||||||     
T  22332402 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatcttcagtcaccgatgctacttctttgcttgatttcatt 22332303  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  22332302 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 22332222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 36597706 - 36597530
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtt 112  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||| || |    
T  36597706 gtgttcatgatccgcactttcaacagagcaccttaactctaatcccatactagattatcttcactcactgatgctacttctttgcttgatttcatttgat 36597607  T
Q  113 ttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
     |||||||||||||||| ||       ||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  36597606 gtaaatatgggtatcaa-tcattttttggtaactctattacaacaacactcttttttataattttggataatatgtaa 36597530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 38962481 - 38962661
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||| ||     
T  38962481 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattaccttcactcactgatgctacttctttgcttgattttatt 38962580  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | ||||||||| |||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  38962581 tgatgtaaatatggatatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 38962661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 38993996 - 38994177
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||||||||||||||||| |||||||     
T  38993996 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcaccgatgctacttctttgcttgatttcatt 38994095  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctctttttta-taattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  38994096 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttattaattttggataatatgtaa 38994177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 14 - 190
Target Start/End: Original strand, 41629206 - 41629381
Alignment:
Q  14 tgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttt 113  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| ||||||| || |     
T  41629206 tgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatttgatg 41629305  T
Q  114 taaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    ||||||||  |||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  41629306 taaatatgattatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 41629381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 38992825 - 38993006
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||| |||| ||     
T  38992825 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattaccttcactcactgatgctacttctttgcttgattttatt 38992924  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctctttttta-taattttggataatatgtaa 190  Q
    || | ||||||||| |||||| ||       ||||||| |||||||||||| |||||||||| ||||||||||||||||||||    
T  38992925 tgatgtaaatatggatatcaa-tcattttttggtaactctataacaacaacactcttttttattaattttggataatatgtaa 38993006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 19248427 - 19248595
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||||||||||| | ||||||||||| ||| ||||||||    
T  19248427 tttggtgttcatgatccacactttcaacagatcaccttaactctaatcctagacgagattatcttcactcactgacgctacttcttttcttgatttcatc 19248526  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataatttt 177  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||||||||||    
T  19248527 tgatgtaaatatgggtatcaaatcattttttggtaactctataacaacaacactcttttttataatttt 19248595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 9 - 177
Target Start/End: Original strand, 19321611 - 19321779
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| |||||||||||||||||||||| |||||||||| || |||||||||||||||||| | ||||||||||| ||| ||||||||    
T  19321611 tttggtgttcatgatccacactttcaacagatcaccttaactctaatcctagacgagattatcttcactcactgacgctacttcttttcttgatttcatc 19321710  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataatttt 177  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||||||||||    
T  19321711 tgatgtaaatatgggtatcaaatcattttttggtaactctataacaacaacactcttttttataatttt 19321779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 9 - 189
Target Start/End: Complemental strand, 6477168 - 6476989
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||  |||||||||||||  || |||||||     
T  6477168 tttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagattagattatcttcactcaccgatgctacttctttttttgatttcatt 6477069  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgta 189  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| |||||||||||||||||||||||||||||    
T  6477068 tgatgtaaatatgagtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgta 6476989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 9 - 180
Target Start/End: Complemental strand, 42810608 - 42810439
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||  ||||||||||||||||| | |||||     
T  42810608 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcctcactcaccgatgctacttctttgcttga-ttcatt 42810510  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttgga 180  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||    
T  42810509 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttgga 42810439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 185
Target Start/End: Original strand, 3751426 - 3751601
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| |||||||||| |||||||||| || |||||||||||||||||  ||||||||||||||||| ||||||||    
T  3751426 tttggtgttcatgatccacactttcaacatatcaccttaactctaatcctagacaagattatcttcactcaccgatgctacttctttgcttgatttcatc 3751525  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataata 185  Q
    || | |||||||| ||||||| ||       ||||||| || ||||||||  |||||||||||||||||||||||||    
T  3751526 tgatgtaaatatgagtatcaa-tccttttttggtaactctacaacaacaaaactcttttttataattttggataata 3751601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 190
Target Start/End: Complemental strand, 23522334 - 23522155
Alignment:
Q  10 ttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatct 109  Q
    |||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||||| | ||| |||||||||| || ||||||| |    
T  23522334 ttggtgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaatgatgttacttctttgtttgatttcattt 23522235  T
Q  110 gttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    | | | ||||| |||||||| ||        |||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  23522234 gatgtgaatataggtatcaa-tcattttttagtaactctataacaacaacactcttttttataattttggataatatgtaa 23522155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 19395237 - 19395057
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||  |||||||||| |||||||||  ||| ||||||||||||||| | ||||||||||||||||| |||||||     
T  19395237 tttggtgttcatgatccgcactttcaaccaatcaccttaactctaatccttgactcgattatcttcactcattgatgctacttctttgcttgatttcatt 19395138  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||| ||||| ||       ||||||| |||||||| ||| ||||||||||||||||||||||| ||||||    
T  19395137 tgatgtaaatatgggcatcaa-tcattttttggtaactctataacaataacactcttttttataattttggataaaatgtaa 19395057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 41533534 - 41533344
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || ||||||| || ||||||  ||| ||||||| || |  ||||||||    
T  41533534 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagacaagattatttttactcaccgatgttacttctatgttagatttcatc 41533435  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | ||||||||| |||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  41533434 tgatgtaaatatggatatcaa-tcgttttttggtaactctacaacaacaacactcttttttataattttggataatatgcaatcataattca 41533344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 9761580 - 9761697
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||| |||||||||||| ||||||| || ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  9761580 tttggtgttcatgatccgcactttcaatagatcaccttaactctaatcgtagactagattatcttcactcactgatgctacttctttgcttgatttcatt 9761679  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  9761680 tgatgtaaatatgggtat 9761697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 42785481 - 42785598
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||| |||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  42785481 tttggtgttcatgatccgcactttcaatagatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 42785580  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  42785581 tgatgtaaatatgggtat 42785598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 9 - 107
Target Start/End: Original strand, 30826706 - 30826804
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  30826706 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctatactagattatcttcactcactgatgctacttctttgcttgatttcat 30826804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 27273544 - 27273661
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||| ||||||||||||| ||| |||||||     
T  27273544 tttggtgttcatgatccgcactttcaacagatcaccttaactctaattctagactagattatcttcactcactgatgctacttctttccttgatttcatt 27273643  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||| ||||    
T  27273644 tgatgtaaatatgagtat 27273661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 33423934 - 33423817
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||  |||||| |||||||||| |||||||     
T  33423934 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcaccgatgctatttctttgcttgatttcatt 33423835  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  33423834 tgatgtaaatatgggtat 33423817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 9 - 130
Target Start/End: Complemental strand, 45293247 - 45293125
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaat-tctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcat 107  Q
    ||||||||||||||||||||||||||| ||||||||||||| |||||||||| || |||||||||||||||||  ||||||||||||| ||| |||||||    
T  45293247 tttggtgttcatgatccgcactttcaatagatcaccttaatctctaatcctagacaagattatcttcactcaccgatgctacttcttttcttgatttcat 45293148  T
Q  108 ctgttttaaatatgggtatcaat 130  Q
     || | ||||||||| |||||||    
T  45293147 atgatgtaaatatggatatcaat 45293125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 5835908 - 5836025
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||| || |  |||||||||||||||||| ||| ||||||||||||| |||||||     
T  5835908 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcatagatcagattatcttcactcactgatgttacttctttgcttgatttcatt 5836007  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  5836008 tgatgtaaatatgggtat 5836025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 122
Target Start/End: Complemental strand, 14078505 - 14078392
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||| ||||||| ||| ||||||||||||| |||||||     
T  14078505 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatctttactcactgatgttacttctttgcttgatttcatt 14078406  T
Q  109 tgttttaaatatgg 122  Q
    || | |||||||||    
T  14078405 tgatgtaaatatgg 14078392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 41977811 - 41977932
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||| |||||||||| |||||||| |||||||||| |  ||||||||| |||||||  ||||||||||||||||| |||||| |    
T  41977811 tttggtgttcatgatccgcattttcaacagaccaccttaactctaatcctagagaagattatctccactcaccgatgctacttctttgcttgatttcacc 41977910  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    |  | |||||||| ||||||||    
T  41977911 ttatgtaaatatgagtatcaat 41977932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 65 - 200
Target Start/End: Original strand, 41156963 - 41157100
Alignment:
Q  65 gattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacg---c 161  Q
    ||||||||||||||||  |||||||||||||| || |||||||||| | ||||||||||||||||| |       ||||||| || |||||||||    |    
T  41156963 gattatcttcactcaccgatgctacttctttgtttgatttcatctgatgtaaatatgggtatcaat-ccttttttggtaactctacaacaacaacaacac 41157061  T
Q  162 tcttttttataattttggataatatgtaatcataattca 200  Q
    |||||||||||||||||||||||||||||||||||||||    
T  41157062 tcttttttataattttggataatatgtaatcataattca 41157100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 7015510 - 7015644
Alignment:
Q  52 taatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaattcnnnnnnnggtaactttata 151  Q
    |||||||| |||| |||||||||||||||| |||||   ||||||||| ||||||| || | ||||||||||||||||| |       | ||||| ||||    
T  7015510 taatcctagactaaattatcttcactcactgatgct---tctttgcttgatttcatttgatgtaaatatgggtatcaat-cattttttgataactctata 7015605  T
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  7015606 acaacaacactcttttttataattttggataatatgtaa 7015644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 45292032 - 45291976
Alignment:
Q  143 aactttataacaacaacgctcttttttataattttggataatatgtaatcataattc 199  Q
    |||| ||||||||||||  ||||||| ||||||||||||||| ||||||||||||||    
T  45292032 aactctataacaacaacaatctttttaataattttggataatgtgtaatcataattc 45291976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 5836027 - 5836065
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  5836027 acaacaacactcttttttataattttggataatatgtaa 5836065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 27273663 - 27273701
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| ||||||||||||||||||||||||||||||    
T  27273663 acaacaacactcttttttataattttggataatatgtaa 27273701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 9761699 - 9761737
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| || |||||||||||||||||||||||||||    
T  9761699 acaacaacactattttttataattttggataatatgtaa 9761737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 14078386 - 14078348
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  14078386 acaacaaaactcttttttataattttggataatatgtaa 14078348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 33423815 - 33423777
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  33423815 acaacaaaactcttttttataattttggataatatgtaa 33423777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 42785600 - 42785638
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| || |||||||||||||||||||||||||||    
T  42785600 acaacaacactattttttataattttggataatatgtaa 42785638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 3e-53; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 9 - 199
Target Start/End: Original strand, 34321647 - 34321836
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |  | |||||||||||||||  ||||||||||||| ||| ||||||||    
T  34321647 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagaaaaaattatcttcactcaccgatgctacttcttttcttgatttcatc 34321746  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattc 199  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  34321747 tgatgtaaatatgggtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatgtgtaatcataattc 34321836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 17940072 - 17940252
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  17940072 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcaccgatgctacttctttgcttgatttcatt 17940171  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| |||||||||| |||||||||||||||||||    
T  17940172 tgatgtaaatatgagtatcaa-tcattttttggtaactctataacaacaacactcttttttacaattttggataatatgtaa 17940252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 198
Target Start/End: Complemental strand, 33321148 - 33320960
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| || |||||||||||||||||  ||||||||||||||||| ||||||||    
T  33321148 tttggtgttcatgatccgcactttcaacaaatcaccttaactttaatcctagacaagattatcttcactcaccgatgctacttctttgcttgatttcatc 33321049  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataatt 198  Q
    || | |||||||||||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||| ||||||||||||||    
T  33321048 tgatataaatatgggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataacatgtaatcataatt 33320960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 7222863 - 7223043
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| ||||| |||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  7222863 tttggtgttcatgatccgcactttcaacatatcactttaactctaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 7222962  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| ||| |||||||| ||||||||||||||||||||||||||||||    
T  7222963 tgatgtaaatatgagtatcaa-tcattttttggtaactctattacaacaacactcttttttataattttggataatatgtaa 7223043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 15276188 - 15276368
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || ||| |||||| ||||||| ||||||||||||||||| |||||||     
T  15276188 tttggtgttcatgatccgcactttcaacacatcaccttaactctaatcctagacgagaatatctttactcactgatgctacttctttgcttgatttcatt 15276287  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||| | ||||||||||||||||||||||||||||||    
T  15276288 tgatgtaaatatgggtatcaa-tccctttttggtaactctataacaacatcactcttttttataattttggataatatgtaa 15276368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 22373538 - 22373358
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||| ||||||||||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||| ||||||| |||||||     
T  22373538 tttggtgttcatgatctgcactttcaacagatcaccttaactttaatcctagactagattatcttcactcactgatgctacttttttgcttgatttcatt 22373439  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||       ||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  22373438 tgatgtcaatatgggtatcaa-tcattttttggtaactctataacaagaacactcttttttataattttggataatatgtaa 22373358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 9 - 130
Target Start/End: Original strand, 25540484 - 25540605
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||||||| || |||||||||||||||||| ||||||||||||||||| ||||||||    
T  25540484 tttggtgttcatgatctacactttcaacagatcaccttaattctaatcctagacaagattatcttcactcactgatgctacttctttgcttgatttcatc 25540583  T
Q  109 tgttttaaatatgggtatcaat 130  Q
    || |||||||||||||||||||    
T  25540584 tgatttaaatatgggtatcaat 25540605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 11933177 - 11933060
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  11933177 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 11933078  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  11933077 tgatgtaaatatgggtat 11933060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 33814543 - 33814660
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  33814543 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 33814642  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  33814643 tgatgtaaatatgggtat 33814660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 4425037 - 4425218
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| ||||||  || ||||||||||||||||| ||  ||||||||||||||||| |||||||     
T  4425037 tttggtgttcatgatccgcactttcaacatatcaccttaactctaattgtagactagattatcttcactgaccgatgctacttctttgcttgatttcatt 4425136  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || |  |||| |||||||||||         ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  4425137 tgatgcaaatctgggtatcaatcatttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 4425218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 18312343 - 18312522
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |||| || ||||||| || |||||||     
T  18312343 tttggtgttcatgattcgcactttcaacagatcaccttaa-tctaatcgtagactagattatcttcactcaccaatgttagttctttgtttgatttcatt 18312441  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | |||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  18312442 tgatgtgaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 18312522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 30044760 - 30044939
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||| ||| |||||||||| |||||||||| ||||||||||||||||| ||||| |     
T  30044760 tttggtgttcatgatccgcactttcaacatatcaccttaactctaattctagactagattatattcactcactgatgctacttctttgcttgatttcttt 30044859  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  30044860 tgatgtaaatatgagtatcaa-tccttttttggtaactctataacaa-aacactcttttttataattttggataatatgtaa 30044939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 35041640 - 35041820
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||||||||||| || |||| |||||||||| || |||||||     
T  35041640 tttggtgttcatgattcgcactttcaacagatcaccttaactctaatcctagactagattatcttcacttaccaatgttacttctttgtttgatttcatt 35041739  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | | ||||||||||||||||         |||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  35041740 tgatgtgaatatgggtatcaatt-attttttagtaactctataataacaacactcttttttataattttggataatatgtaa 35041820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 18598680 - 18598563
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  18598680 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 18598581  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  18598580 tgatgtaaatatgggtat 18598563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 1072958 - 1072841
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| |||||||||||||| || |||||||     
T  1072958 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgtttgatttcatt 1072859  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  1072858 tgatgtaaatatgggtat 1072841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 2521717 - 2521834
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||  ||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  2521717 tttggtgttcatgatccgcactttcaacatgtcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 2521816  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  2521817 tgatgtaaatatgggtat 2521834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 14887633 - 14887516
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||| ||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  14887633 tttggtgttcatgatcctcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 14887534  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  14887533 tgatgtaaatatgggtat 14887516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 34856504 - 34856621
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||     
T  34856504 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatt 34856603  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||| ||||    
T  34856604 tgatgtaaatatgagtat 34856621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 21800099 - 21800210
Alignment:
Q  15 gttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtttt 114  Q
    ||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||||| ||| ||||||||||||| ||||||| || | |    
T  21800099 gttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcactgatgttacttctttgcttgatttcatttgatgt 21800198  T
Q  115 aaatatgggtat 126  Q
    ||||||||||||    
T  21800199 aaatatgggtat 21800210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 14832059 - 14832225
Alignment:
Q  33 caacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtatcaattc 132  Q
    |||||||||| ||||| |||||||||| || |||||||||||||||||  ||  |||||||||| || |||||||||| | || |||||| ||||||| |    
T  14832059 caacagatcatcttaactctaatcctagacaagattatcttcactcaccgattatacttctttgtttgatttcatctgatgtatatatgg-tatcaat-c 14832156  T
Q  133 nnnnnnnggtaactttataacaacaacgctc-ttttttataattttggataatatgtaatcataattca 200  Q
           ||||||| || ||||||||| ||| |||||||||||||||||||||||||||||||||||||    
T  14832157 cttttttggtaactctacaacaacaacactcgttttttataattttggataatatgtaatcataattca 14832225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Original strand, 25540645 - 25540681
Alignment:
Q  164 ttttttataattttggataatatgtaatcataattca 200  Q
    |||||||||||||||||||||||||||||||||||||    
T  25540645 ttttttataattttggataatatgtaatcataattca 25540681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 1072839 - 1072801
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  1072839 acaacaaaactcttttttataattttggataatatgtaa 1072801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 11933058 - 11933020
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| || |||||||||||||||||||||||||||    
T  11933058 acaacaacacttttttttataattttggataatatgtaa 11933020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Complemental strand, 18598561 - 18598523
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  18598561 acaacaaaactcttttttataattttggataatatgtaa 18598523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 21800212 - 21800250
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  21800212 acaacaaaactcttttttataattttggataatatgtaa 21800250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 33814662 - 33814700
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||| || |||||||||||||||||||||||||||    
T  33814662 acaacaacactattttttataattttggataatatgtaa 33814700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 34856623 - 34856661
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  34856623 acaacaaaactcttttttataattttggataatatgtaa 34856661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 3107 - 2927
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||  ||||||||||||||||| |||||||     
T  3107 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatattcactcaccgatgctacttctttgcttgatttcatt 3008  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| ||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  3007 tgatgtaaatatgagtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 2927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 11101 - 10914
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||  ||||||||||||||||| ||||||||    
T  11101 tttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagacaagattatcttcactcaccgatgctacttctttgcttgatttcatc 11002  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| |   |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11001 tgatgtaaatatgggtatcaa-tccttttttggtaactct---acaacaacactcttttttataattttggataatatgtaatcataattca 10914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 4652 - 4465
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| || |||||||||||||||||  ||||||||||||||||| ||||||||    
T  4652 tttggtgttcatgatccgcactttcaacaaatcaccttaactataatcctagacaagattatcttcactcaccgatgctacttctttgcttgatttcatc 4553  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       ||||||| |   |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4552 tgatgtaaatatgggtatcaa-tccttttttggtaactct---acaacaacactcttttttataattttggataatatgtaatcataattca 4465  T

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Target: scaffold1634 (Bit Score: 101; Significance: 3e-50; HSPs: 1)
Name: scaffold1634
Description:

Target: scaffold1634; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 720 - 540
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||||||  ||||||||||||||||| |||||||     
T  720 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatgctagactagattatcttcactcacagatgctacttctttgcttgatttcatt 621  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||||||||||  |||||||||||    
T  620 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactcttttttataattttacataatatgtaa 540  T

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Target: scaffold0079 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 10422 - 10233
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||| ||| |||||||||| || ||||||||    
T  10422 tttggtgttcatgatccgcactttcaacaaatcaccttaactctaatcctagacaagattatcttcactcactgatgatacttctttgtttgatttcatc 10323  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    |  | ||||||| |||||||| ||       ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10322 ttatgtaaatat-ggtatcaa-tccttttttggtaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 10233  T

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Target: scaffold0045 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 9 - 200
Target Start/End: Complemental strand, 12616 - 12426
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||| |||||||||||||| ||||| |||| |||||||||| || |||||||||||||||||  |||||||||||||||||  |||||||    
T  12616 tttggtgttcatgacccgcactttcaacatatcacattaactctaatcctagacaagattatcttcactcaccgatgctacttctttgcttggtttcatc 12517  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    || | |||||||||||||||| ||       | ||||| || ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12516 tgatgtaaatatgggtatcaa-tccttttttgctaactctacaacaacaacactcttttttataattttggataatatgtaatcataattca 12426  T

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Target: scaffold0010 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 120477 - 120662
Alignment:
Q  13 gtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgtt 112  Q
    |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||   |||||||| |||||||| |||||||||| |    
T  120477 gtgttcatgatctgcactttcaacagatcaccttaactctaatcctatactagattatcttcactcatcgatgctactcctttgcttgatttcatctgat 120576  T
Q  113 ttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaatcataattc 199  Q
     |||||||  ||||||| ||       ||||||| | |||||||||  |||||||||||||||||||||||||||||||||||||||    
T  120577 gtaaatataagtatcaa-tccttttttggtaactctctaacaacaaaactcttttttataattttggataatatgtaatcataattc 120662  T

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Target: scaffold0010; HSP #2
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 177027 - 177207
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||| || |||| ||||| |||||||||  ||||||||||||||||| |||||||     
T  177027 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcttagactaaattatattcactcaccgatgctacttctttgcttgatttcatt 177126  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    |  | |||||||||||||||| ||       ||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  177127 taatgtaaatatgggtatcaa-tccttttttggtaactctataacaacaacactcttttttataattttggataatatgtaa 177207  T

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Target: scaffold0047 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 26047 - 25867
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||     
T  26047 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcagtgatgttacttctttgcttgatttcatt 25948  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||||||||||| ||       ||||||| ||| |||||||  |||||||||| |||||||||||||||||||    
T  25947 tgatgtaaatatgggtatcaa-tccttttttggtaactctattacaacaaaactcttttttagaattttggataatatgtaa 25867  T

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Target: scaffold0121 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 9 - 169
Target Start/End: Complemental strand, 15025 - 14866
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||| |||| ||| |||||||||||||| |||||||     
T  15025 tttggtgttcatgatccgcactttcaacagatcaccttaactctaatcctagactagattatcttcagtcaccaattctacttctttgcttgatttcatt 14926  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctctttttt 169  Q
    || | |||||||||||||||| ||       ||||||| |||||||||||| |||||||||    
T  14925 tgatgtaaatatgggtatcaa-tcattttttggtaactctataacaacaacactctttttt 14866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 9 - 190
Target Start/End: Complemental strand, 48923 - 48744
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||| |||||||||  ||||||||||||||||| ||||| |     
T  48923 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagactagattatattcactcaccgatgctacttctttgcttgatttcttt 48824  T
Q  109 tgttttaaatatgggtatcaattcnnnnnnnggtaactttataacaacaacgctcttttttataattttggataatatgtaa 190  Q
    || | |||||||| |||| || ||       ||||||| |||||||| ||| ||||||||||||||||||||||||||||||    
T  48823 tgatgtaaatatgagtat-aaatctttttttggtaactctataacaa-aacactcttttttataattttggataatatgtaa 48744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 82; Significance: 7e-39; HSPs: 2)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 515 - 632
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||||||||||||||||  ||||||||||||||||| ||||||||    
T  515 tttggtgttcatgatccgcactttcaacatatcaccttaactctaatcctagacaagattatcttcactcaccgatgctacttctttgcttgatttcatc 614  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  615 tgatgtaaatatgggtat 632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 3123 - 3172
Alignment:
Q  151 aacaacaacgctcttttttataattttggataatatgtaatcataattca 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3123 aacaacaacactcttttttataattttggataatatgtaatcataattca 3172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 74; Significance: 4e-34; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 10496 - 10613
Alignment:
Q  9 tttggtgttcatgatccgcactttcaacagatcaccttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatc 108  Q
    ||||||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||||||||| | ||| ||||||||||||| |||||||     
T  10496 tttggtgttcatgatccgcactttcaacatatcaccttaactttaatcctagactagattatcttcactcagtgatgttacttctttgcttgatttcatt 10595  T
Q  109 tgttttaaatatgggtat 126  Q
    || | |||||||||||||    
T  10596 tgatgtaaatatgggtat 10613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 5099 - 5183
Alignment:
Q  42 accttaattctaatcctatactagattatcttcactcactaatgctacttctttgcttcatttcatctgttttaaatatgggtat 126  Q
    ||||||| | |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||| || | |||||||||||||    
T  5099 accttaactttaatcctagactagattatcttcactcactgatgctacttctttgcttgatttcatttgatgtaaatatgggtat 5183  T

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Target: scaffold0122; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 5185 - 5223
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  5185 acaacaaaactcttttttataattttggataatatgtaa 5223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1891 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1891
Description:

Target: scaffold1891; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 190
Target Start/End: Original strand, 115 - 153
Alignment:
Q  152 acaacaacgctcttttttataattttggataatatgtaa 190  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  115 acaacaaaactcttttttataattttggataatatgtaa 153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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