View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_low_4 (Length: 479)
Name: NF9806_low_4
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 469
Target Start/End: Complemental strand, 38039998 - 38039548
Alignment:
| Q |
19 |
acatacatacataaaatagttaaggattacaaacacaaacaccgttatcattacatcataaaaattgaaattggccctgtcaagataaagtatgaaggtt |
118 |
Q |
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| T |
38039998 |
acatacatacataaaatagttaaggattacacacacaaacaccgttatcattacatcataaaaattgaaattggccctgtcaagataaagtatgaaggtt |
38039899 |
T |
|
| Q |
119 |
gatgaggttagcgttgaagaaacccagcaaagttgctttttgaagcaaaaccattaataaagagaatataagattgctttagattaacatggggtactaa |
218 |
Q |
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| T |
38039898 |
gatgaggttagcgttgaagaaacccagcaaagttgctttttgaagcaaagccattaataaagagaatataagattgctttagattaacatggggtactaa |
38039799 |
T |
|
| Q |
219 |
acatcgtcctgctttattctttttcccttgcttctttgaaatcctcatcatgtgtcttggtggtgatgttagattctcttcacacaattcaggttcttca |
318 |
Q |
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| T |
38039798 |
acatcgtcctgctttattctttttcccttgcttctttgaaatcctcatcatgtgtcttggtggtgatgttagattctcttcacacaattcaggttcttca |
38039699 |
T |
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| Q |
319 |
atgatagtagaaagcttagaccttagaatttcctccatgtccttcctagactcatttctcctgctagtgcaaggcactgaccttaatattttcctgcatg |
418 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
38039698 |
atgatagtagaaagcttagcccttagaatttcctccatgtccttcctagactcatttctcctgctcgtgcaaggcactgaccttaatattttcctgcatg |
38039599 |
T |
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| Q |
419 |
ccctcctcatttcttttgcttctgatttcaatctttacatttgcacctatg |
469 |
Q |
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| T |
38039598 |
ccctcctcatttcttttgcttctgatttcaatctttacatttgcacctatg |
38039548 |
T |
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