View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_low_6 (Length: 457)
Name: NF9806_low_6
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 19 - 443
Target Start/End: Original strand, 35108542 - 35108971
Alignment:
| Q |
19 |
gtacgagcacctaacttgatctactgcatctgactttatgctgcaaactattaaatgaagataacaaatttctctcttaattcttgctggacaccgtgat |
118 |
Q |
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| T |
35108542 |
gtacgagcacctaacttgatctactgcatctgactttatgctgcaaactattaaatgaagataacaaatttctctcttaattcttgctggacaccgtgat |
35108641 |
T |
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| Q |
119 |
atttatttaatgcnnnnnnntaggtaaaggttacacattcatgccaagttcgaaaacgtggtccttaagaactcctaattttagttagggctacgtttca |
218 |
Q |
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| T |
35108642 |
atttatttaatgcaaaaaaataggtaaaggttacacattcatgccaagttcgaaaacgtggtccttaagaactcctaattttagttagggctacgtttca |
35108741 |
T |
|
| Q |
219 |
cactcatttctgaaagtatactttttaaatatatagttttagatttgcacatccaaatgtccctcaagggtagggtaagttttagccctaatttaacaaa |
318 |
Q |
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| T |
35108742 |
cactcatttctgaaagtatactttttaaatatatagttttagatttgcacatccaaatgtccctcaagggtagggtaagttttagccctaatttaacaaa |
35108841 |
T |
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| Q |
319 |
tgccatattgcatatggtccctcccctattgcatctaggacaaaaagaagtggatgatcaat--tggatttggacaattcgtcggctatgcc---tgttt |
413 |
Q |
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| T |
35108842 |
tgccatattgcatatggtccctcccctattgcatctaggacaaaaagaagtggatgatcaattgtggatttggacaattcgtcggctgcgcctgttgttt |
35108941 |
T |
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| Q |
414 |
tctcatgaatgttactggtgtgtgttctcc |
443 |
Q |
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| T |
35108942 |
tctcatgaatgttactggtgtgtgttctcc |
35108971 |
T |
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