View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_low_8 (Length: 402)
Name: NF9806_low_8
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 12813435 - 12813817
Alignment:
| Q |
1 |
tgaaacccataaatcatctctatcattgtttgaattgnnnnnnnngaaagaggaagagtaagattggtgattagtttcgtttgagggtttgacagatgat |
100 |
Q |
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| T |
12813435 |
tgaaacccataaatcatctctatcactgtttgaattgaaacaaa-gaaagaggaagagtaagattggtgattagtttcgtttgagggtttgacagatgat |
12813533 |
T |
|
| Q |
101 |
tgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataaccacctgaagagccaacttcctcaactcttcttgtaggccatcaccag |
200 |
Q |
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| T |
12813534 |
tgcaaaagtggttttctaacaccagtaagagaatgatcatacattccaataacctcctgaagagccaacttcctcaactcttcttgtaggccatcaccag |
12813633 |
T |
|
| Q |
201 |
taagccacccacgaaacacaccacgatccaacaaatacacaattgactgccgccacatatatannnnnnnacattccattttaaccctatcttctaaaca |
300 |
Q |
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| T |
12813634 |
taagccacccacgaaacacaccacgatccaacaaatacacaattga---ccgccacatatatatttttttacattccattttaaccctatcttctaaaca |
12813730 |
T |
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| Q |
301 |
taaaatannnnnnnggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttgacaaaggtcatatatagtg |
387 |
Q |
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| T |
12813731 |
taaaatatttttttggatcaatgtcatgaaatattaaccctctcactccttcttctaagaaaattttgacaaaggtcatatatagtg |
12813817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 30621994 - 30622111
Alignment:
| Q |
127 |
aagagaatgatcatacattccaataaccacctgaagagccaacttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacga |
226 |
Q |
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| T |
30621994 |
aagagaatgatcgtacattccaataacctcgtgaagagccaacttcctcaactcctcttgtgggccatcaccagtaagccacccacgaaaaacaccacga |
30622093 |
T |
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| Q |
227 |
tccaacaaatacacaatt |
244 |
Q |
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|||||||||||| ||||| |
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| T |
30622094 |
tccaacaaatacgcaatt |
30622111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 170 - 244
Target Start/End: Original strand, 22418304 - 22418378
Alignment:
| Q |
170 |
ttcctcaactcttcttgtaggccatcaccagtaagccacccacgaaacacaccacgatccaacaaatacacaatt |
244 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22418304 |
ttcctcaactcttcttgtaggccatcactagtaagccacccacgaaacacaccacgatccaacaaatacgcaatt |
22418378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 54 - 117
Target Start/End: Complemental strand, 48292701 - 48292638
Alignment:
| Q |
54 |
aagagtaagattggtgattagtttcgtttgagggtttgacagatgattgcaaaagtggttttct |
117 |
Q |
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|||||| ||| |||||||||||| |||||||||||||||||||||| |||||||||| ||||| |
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| T |
48292701 |
aagagtgagaatggtgattagttacgtttgagggtttgacagatgagagcaaaagtggctttct |
48292638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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