View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9806_low_9 (Length: 381)
Name: NF9806_low_9
Description: NF9806
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9806_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 341; Significance: 0; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 375
Target Start/End: Complemental strand, 6423774 - 6423418
Alignment:
| Q |
19 |
ctcactaccgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgc |
118 |
Q |
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| T |
6423774 |
ctcactaccgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgc |
6423675 |
T |
|
| Q |
119 |
tttggaaatgtctgctgttgcatatagggattgggttttcactgagcaagggctaccaaatgatctactcaaaaggtgatattacaaagcattagattct |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
6423674 |
tttggaaatgtctgctgttgcatatagggattgggttttcactgagcaagggctacctaatgatctactcaaaaggtgatattacaaagcattagattct |
6423575 |
T |
|
| Q |
219 |
atgtttattcataaaggaaaaagcaattgattcacaaaagtaatttttatttatgctaatgtgatataccttgcttgttatgcagaggagtggctgttga |
318 |
Q |
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| T |
6423574 |
atgtttactcataaaggaaaaagcaattgattcacaaaagtaatttttatttatgctaatgtgatataccttgcttgttatgcagaggagtggctgttga |
6423475 |
T |
|
| Q |
319 |
ggatccagcttcaccacacggcattcgccttttgattgaggattatccctttgcttc |
375 |
Q |
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| T |
6423474 |
ggatccagcttcaccacacggcattcgccttttgattgaggattatccttatgcttc |
6423418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 6351930 - 6351754
Alignment:
| Q |
19 |
ctcactaccgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgc |
118 |
Q |
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| T |
6351930 |
ctcactaccgtgacacaatgaacataaatgcacttgcacgaaatgtcttggtcaatgcagagggtattatagaatcaaccttcttgtggggaaattatgc |
6351831 |
T |
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| Q |
119 |
tttggaaatgtctgctgttgcatatagggattgggttttcactgagcaagggctaccaaatgatctactcaaaaggt |
195 |
Q |
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|||||||||||||||||||| || | ||||||| ||||| ||||||||| ||||| || |||||| ||||||||| |
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| T |
6351830 |
tttggaaatgtctgctgttgtttacaaggattggaatttcattgagcaaggactacctaacgatctaatcaaaaggt |
6351754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 27 - 212
Target Start/End: Complemental strand, 6362855 - 6362670
Alignment:
| Q |
27 |
cgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgctttggaaa |
126 |
Q |
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|||||||| |||||||||||| |||| ||||| ||||| | |||||||| ||||||||||| || ||||| |||||||||||| ||||||||||||| |
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| T |
6362855 |
cgtgacacgatgaacataaatgcactagcacgaaatgtgttggtcaatgccgagggtattatcgagtcaactttcttgtggggaaagtatgctttggaaa |
6362756 |
T |
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| Q |
127 |
tgtctgctgttgcatatagggattgggttttcactgagcaagggctaccaaatgatctactcaaaaggtgatattacaaagcatta |
212 |
Q |
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||||| |||| | || | |||||||||||||||||||||||| ||||| ||||||||| ||||||||| | ||||||| ||||| |
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| T |
6362755 |
tgtcttctgtcgtttacaaggattgggttttcactgagcaaggcctacctaatgatctaatcaaaaggtaaccttacaaaacatta |
6362670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 7458751 - 7458577
Alignment:
| Q |
21 |
cactaccgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgctt |
120 |
Q |
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||||||||||||||||||||||||||||| || ||||| | | || | |||||||| | |||| |||| |||| ||| ||||||||||||| |||||| |
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| T |
7458751 |
cactaccgtgacacaatgaacataaattccctcgcacgaactatcttggtcaatgcagggggtgttatggaattaactttcttgtggggagattatgctg |
7458652 |
T |
|
| Q |
121 |
tggaaatgtctgctgttgcatatagggattgggttttcactgagcaagggctaccaaatgatctactcaaaaggt |
195 |
Q |
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| T |
7458651 |
ttgaaatgtctgctgttgtttacaaggattggaatttcaccgagcaaggacttcctaatgatctaatcaaaaggt |
7458577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 7471153 - 7470979
Alignment:
| Q |
21 |
cactaccgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgctt |
120 |
Q |
| |
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|||||| |||||||||||||| ||||||| || ||||| | | || | |||||||| | |||| |||| |||| ||| ||||||||||||| |||||| |
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| T |
7471153 |
cactactgtgacacaatgaacttaaattccctcgcacgaactatcttggtcaatgcagggggtgttatggaattaactttcttgtggggagattatgctg |
7471054 |
T |
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| Q |
121 |
tggaaatgtctgctgttgcatatagggattgggttttcactgagcaagggctaccaaatgatctactcaaaaggt |
195 |
Q |
| |
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| |||||||||||||||| || | ||||||| ||||||||||||||| || || ||||||||| ||||||||| |
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| T |
7471053 |
tcgaaatgtctgctgttgtttacaaggattggaatttcactgagcaaggacttcctaatgatctaatcaaaaggt |
7470979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 6321056 - 6320888
Alignment:
| Q |
27 |
cgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgctttggaaa |
126 |
Q |
| |
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||||||||||||||||| ||| |||||||| ||| |||| | || ||||| |||||||||||||||||||||||||| | |||| | || || | ||| |
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| T |
6321056 |
cgtgacacaatgaacattaatgcacttgcaaggagtgtcttggtaaatgcagagggtattatagaatcaacattcttattgggaagtcattctatagaac |
6320957 |
T |
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| Q |
127 |
tgtctgctgttgcatatagggattgggttttcactgagcaagggctaccaaatgatctactcaaaaggt |
195 |
Q |
| |
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||||| |||| ||||| ||||||||||||| | || ||||| ||||| ||||||||||| ||||||| |
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| T |
6320956 |
tgtcttctgtattatataaggattgggttttcccagatcaaggactacctaatgatctacttaaaaggt |
6320888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 27 - 195
Target Start/End: Complemental strand, 6331563 - 6331395
Alignment:
| Q |
27 |
cgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattatagaatcaacattcttgtggggaggatatgctttggaaa |
126 |
Q |
| |
|
||||||||||||||||| ||| |||||||| |||||||| | || ||||| ||||||||||||||||| ||||||||| |||| | ||| |||| ||| |
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| T |
6331563 |
cgtgacacaatgaacattaatgcacttgcaaggaatgtcttggttaatgcagagggtattatagaatcgacattcttgatgggacgttattctttagaat |
6331464 |
T |
|
| Q |
127 |
tgtctgctgttgcatatagggattgggttttcactgagcaagggctaccaaatgatctactcaaaaggt |
195 |
Q |
| |
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|||||||| | ||||| |||||||||||||| ||||| || || || |||||| |||| ||||||| |
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| T |
6331463 |
tgtctgctctattatataaggattgggttttcatagagcacggtcttcctaatgatttactgaaaaggt |
6331395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 287 - 360
Target Start/End: Complemental strand, 6331141 - 6331068
Alignment:
| Q |
287 |
ccttgcttgttatgcagaggagtggctgttgaggatccagcttcaccacacggcattcgccttttgattgagga |
360 |
Q |
| |
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| T |
6331141 |
ccttgcttgttatctagaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagagga |
6331068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 354
Target Start/End: Complemental strand, 6288036 - 6287984
Alignment:
| Q |
302 |
agaggagtggctgttgaggatccagcttcaccacacggcattcgccttttgat |
354 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||| |||||||| |||| |
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| T |
6288036 |
agaggagtggctgttgaggatccaacttccccacacggccttcgccttctgat |
6287984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 302 - 360
Target Start/End: Complemental strand, 6320664 - 6320606
Alignment:
| Q |
302 |
agaggagtggctgttgaggatccagcttcaccacacggcattcgccttttgattgagga |
360 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||| || ||||||||| |||| ||||| |
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| T |
6320664 |
agaggagtggctgttgaggatccaacttccccacatggaattcgccttctgatagagga |
6320606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 293 - 360
Target Start/End: Complemental strand, 6273794 - 6273727
Alignment:
| Q |
293 |
ttgttatgcagaggagtggctgttgaggatccagcttcaccacacggcattcgccttttgattgagga |
360 |
Q |
| |
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||||||| ||||||||||||||| |||||||| ||| ||||||||| |||||||| |||| ||||| |
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| T |
6273794 |
ttgttatctagaggagtggctgttaaggatccaagttccccacacggccttcgccttctgatagagga |
6273727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 6274190 - 6274123
Alignment:
| Q |
21 |
cactaccgtgacacaatgaacataaattcacttgcacggaatgtccttgtcaatgctgagggtattat |
88 |
Q |
| |
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||||| ||||||||||||||||| ||| |||||||| ||||||| | |||||||| |||||| |||| |
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| T |
6274190 |
cactatcgtgacacaatgaacattaatgcacttgcaaggaatgttttggtcaatgcagagggtgttat |
6274123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 6351589 - 6351500
Alignment:
| Q |
287 |
ccttgcttgttatgcagaggagtggctgttgaggatccagcttcaccacacggcattcgccttttgattgaggattatccctttgcttct |
376 |
Q |
| |
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||||||||||||| |||||||| ||||||||||||||||| || || ||| | |||||| |||| ||||||||||| | ||||||| |
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|
| T |
6351589 |
ccttgcttgttatttagaggagtagctgttgaggatccagcctctcctaccggtctccgccttctgatagaggattatccttatgcttct |
6351500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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