View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9807_high_2 (Length: 568)
Name: NF9807_high_2
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9807_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 9439168 - 9439512
Alignment:
| Q |
18 |
agtagtatcagtgtcaggctgtcagctgaaacctaaatcaggttgacaacataacatttttgggctctataggaatggaaatcgacccagcacttacgtt |
117 |
Q |
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| T |
9439168 |
agtagtatcagtgtcaggctgtcagctgaaacctaaatcaggttgacaacataacatttttgggctctataggaatggaaatcgacccagcacttacgtt |
9439267 |
T |
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| Q |
118 |
caactttcacctcgtccttcaatccattcataatgactccagtgagttcagccaggaaaggttcactaggaatgtctccccgaacaagaagaatcatggg |
217 |
Q |
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| T |
9439268 |
caactttcacctcgtccttcaatccattcatactgactccagtgagttcagccaggaaaggttcactaggaatgtctccccgaacaagaagaatcatggg |
9439367 |
T |
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| Q |
218 |
aacactatatcttgccaatttcaaccttgcagacaaaataagtcttgtttgggacatgctgatagagccatgaatgagatatatacaatgagaatttgat |
317 |
Q |
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| T |
9439368 |
aacactatatcttgccaatttcaaccttgcagacaaaataagtcttgtttgggacatgctgatagagccatgaatgagatctatacaatgagaatttgat |
9439467 |
T |
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| Q |
318 |
gaaggttcgcctgaaaagaattttagaccagatattccctcggag |
362 |
Q |
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| T |
9439468 |
gaaggttcgcctgaaaagaattttagaccagatattccctcggag |
9439512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 401 - 558
Target Start/End: Original strand, 9439510 - 9439667
Alignment:
| Q |
401 |
gagggaattcgcaaaaattataagaagaaagtgggagagtggaagaggatctatcctaatggatttaaggatagaaaatgttgtatctgactctgcagag |
500 |
Q |
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| T |
9439510 |
gagggaattcgcaagaattatatgaagaaagtgggagagtggaagaggatctatcctaatggatttaaggatagaaaatgttgtatctgactctgcagag |
9439609 |
T |
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| Q |
501 |
taacctctggttttcttctacctttttcttactatccaaatactttctcactcctatg |
558 |
Q |
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| T |
9439610 |
taacctctggttttcttctaccttttgcttactatccaaatactttgtcactcctatg |
9439667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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