View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9807_high_3 (Length: 542)
Name: NF9807_high_3
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9807_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 48 - 535
Target Start/End: Complemental strand, 29904988 - 29904501
Alignment:
| Q |
48 |
gaaagagatgcatgatgtatttggttttcatagcaacgagaaggttatactttgttactatggtgataatctttttgggatatatcatagcaagaaacat |
147 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29904988 |
gaaagagatgcatgatgtatttggttttcatagcaacgagaaggttatactttgttactatggtgataatctttttgggatatatcatagcaagaaacat |
29904889 |
T |
|
| Q |
148 |
gaaaaccctgaccagattccaacttatcatagcctaggcttgcgggttggatgcacaatgcacttttatcttcagccgaatgcattaagtgccatcagtt |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29904888 |
gaaaaccctgaccagattccaacttatcatagcataggcttgcgggttggatgcacaatgcacttttatcttcagctgaatgcattaagtgccatcagtt |
29904789 |
T |
|
| Q |
248 |
ctcacttggttggtatattagttctacatggatgcaccttcgaggaaaactgcgctgggaatgagatggaaggaattttgtgatgaaaatgggttcaatg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
29904788 |
ctcacttggttggtatattagttctacatggatgcaccttcgaggaaaactgcgctgggaatgagatggaaggaattttgtgatgaaaatgggatcaatg |
29904689 |
T |
|
| Q |
348 |
ttcgtgacattctctgtttcaagtttgagattgttaacccaaaaaagagtggtcatgtttttaaagttcagatgtgagcatctgtttctcatgtctctcc |
447 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
29904688 |
ttcgtgacattctctgtttcaagtttgagattgttaacccaaaaaagagtggtcatgtttttaaagttcggatgcgagcatctgtttctcatgtctctcc |
29904589 |
T |
|
| Q |
448 |
cacgaagagttagtgtattattttgagtgttgtttttatatttatatgttttggctaggctttagttggtaggacttggtctctgcta |
535 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29904588 |
cacgaagagttagtgtattgttttgagtgttgtttttatatttatatgttttggctaggctttagttggtaggacttggtctttgcta |
29904501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University