View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9807_high_4 (Length: 447)

Name: NF9807_high_4
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9807_high_4
NF9807_high_4
[»] chr2 (1 HSPs)
chr2 (183-430)||(19175785-19176044)
[»] chr7 (17 HSPs)
chr7 (1-173)||(43029851-43030023)
chr7 (1-139)||(42800864-42801002)
chr7 (1-139)||(42835536-42835671)
chr7 (48-139)||(35070415-35070506)
chr7 (48-139)||(35096451-35096542)
chr7 (59-139)||(35079113-35079193)
chr7 (47-139)||(35093203-35093295)
chr7 (46-138)||(33864546-33864638)
chr7 (46-134)||(34150969-34151057)
chr7 (46-134)||(34176067-34176155)
chr7 (73-139)||(36741465-36741531)
chr7 (54-139)||(38288226-38288311)
chr7 (51-135)||(45582145-45582229)
chr7 (86-131)||(38155331-38155376)
chr7 (77-137)||(38283759-38283819)
chr7 (56-116)||(44958707-44958767)
chr7 (15-131)||(38185566-38185682)
[»] chr5 (1 HSPs)
chr5 (47-139)||(9666623-9666715)
[»] chr6 (6 HSPs)
chr6 (46-138)||(25570603-25570695)
chr6 (46-138)||(26005071-26005163)
chr6 (77-139)||(4161461-4161523)
chr6 (77-135)||(4223085-4223143)
chr6 (46-95)||(26105095-26105144)
chr6 (97-138)||(26123895-26123936)
[»] scaffold0176 (1 HSPs)
scaffold0176 (83-138)||(20474-20529)
[»] chr1 (1 HSPs)
chr1 (77-139)||(52214741-52214803)
[»] chr3 (1 HSPs)
chr3 (77-137)||(2220578-2220638)


Alignment Details
Target: chr2 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 183 - 430
Target Start/End: Original strand, 19175785 - 19176044
Alignment:
Q  183 gataggcacagtagtatgtcatatacctataaaatcggtaataatgcggccatctgagaatcgtccggtgggtttatcgaaaaccccattttgtccatat 282  Q
    |||||||| || ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19175785 gataggcatagcagtatgttatatacctataaaatcggtaataacgcggccatctgagaatcgtccggtgggtttatcgaaaaccccattttgtccatat 19175884  T
Q  283 ggtttacaatctgctttgttctcaggaatagtatctatatagttgttgttgccagaatcaacagtagaatcaccaaaaatgaaaagggcatt-------- 374  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||            
T  19175885 ggtttacaatctgctttgttctcaggaatagtatctatatagttgttgttgccagaatcaacagtagagtcaccaaaaatgaaaagagcattattggtaa 19175984  T
Q  375 ----attggcaatttcatttatgtgactttgggatgtgatcaaacacaatgaagcaatga 430  Q
        |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||    
T  19175985 taccattggcaatttcatttatgtgaatttgggatgtgatcaaactcaatgaagcaatga 19176044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 157; Significance: 3e-83; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 43029851 - 43030023
Alignment:
Q  1 gatcgtgacagatactatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatg 100  Q
    |||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43029851 gatcgtgacagatactatataggtgctcgtagatggattaattactgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatg 43029950  T
Q  101 aagtaaatgaacaatgccagcttataattttgtagtgttcataaatccatttttggtaatggaaggaaaagag 173  Q
    |||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43029951 aagtaaatgaacaatgacagcttataattttatagtgttcataaatccatttttggtaatggaaggaaaagag 43030023  T

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Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 42800864 - 42801002
Alignment:
Q  1 gatcgtgacagatactatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatg 100  Q
    |||||||||||||||||||||| ||||  ||| |||||||||| ||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||    
T  42800864 gatcgtgacagatactatatagatgctagtagatggattaatttctgcggtggtggttgttggattgaagagaatgttattcacgagatgcttaaagatg 42800963  T
Q  101 aagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  42800964 aagtaaatgaacaatgccaccttataattttgtaatgtt 42801002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 42835536 - 42835671
Alignment:
Q  1 gatcgtgacagatactatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatg 100  Q
    |||||||||||||||||||||| ||||  ||| |||||||||| ||||||||||||||||||  |||||||||||   ||||||||||||||||||||||    
T  42835536 gatcgtgacagatactatatagatgctagtagatggattaatttctgtggtggtggttgttgcattggagagaat---attcacgagatgcttaaagatg 42835632  T
Q  101 aagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  42835633 aagtaaatgaacaatgccaccttataattttgtagtgtt 42835671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 35070506 - 35070415
Alignment:
Q  48 tggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35070506 tggtggttgtcgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 35070415  T

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Target: chr7; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 48 - 139
Target Start/End: Complemental strand, 35096542 - 35096451
Alignment:
Q  48 tggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35096542 tggtggttgtcgttggtttgaagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 35096451  T

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Target: chr7; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 59 - 139
Target Start/End: Complemental strand, 35079193 - 35079113
Alignment:
Q  59 gttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35079193 gttggtttggagagaatgttattcatgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 35079113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 47 - 139
Target Start/End: Complemental strand, 35093295 - 35093203
Alignment:
Q  47 gtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    |||||||| || ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||    
T  35093295 gtggtggttgtcgttggtttggagagaatgttattcatgagatgcttatagatgaagtaaatgaacaatgtcagcttataattttgtagtgtt 35093203  T

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Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 33864546 - 33864638
Alignment:
Q  46 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 138  Q
    |||||||||| ||||||||| ||| |||||||||||| |||||||||||| |||||||||||||||||||| |||||||| ||| ||||||||    
T  33864546 tgtggtggtgattgttggttaggaaagaatgttattcgcgagatgcttaaggatgaagtaaatgaacaatgtcagcttattattctgtagtgt 33864638  T

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Target: chr7; HSP #9
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 134
Target Start/End: Original strand, 34150969 - 34151057
Alignment:
Q  46 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgta 134  Q
    |||||||||  ||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34150969 tgtggtggtcattgttggttaggaaataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgta 34151057  T

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Target: chr7; HSP #10
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 46 - 134
Target Start/End: Complemental strand, 34176155 - 34176067
Alignment:
Q  46 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgta 134  Q
    |||||||||  ||||||||| ||| | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34176155 tgtggtggtcattgttggttaggaaataatgttatttacgagatgcttaaagatgaagtaaatgaacaatgtcagcttataattttgta 34176067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 73 - 139
Target Start/End: Complemental strand, 36741531 - 36741465
Alignment:
Q  73 aatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||||| | |||||||||||||||||||||||| ||||||| || |||||||||||||||||||    
T  36741531 aatgttatttatgagatgcttaaagatgaagtaaataaacaatgtcaacttataattttgtagtgtt 36741465  T

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Target: chr7; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 54 - 139
Target Start/End: Original strand, 38288226 - 38288311
Alignment:
Q  54 tggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    |||||||||||||| | ||||| ||||||| || |||||||||||||||||||||||||| || ||  |||||||| |||||||||    
T  38288226 tggttgttggtttgaacagaatcttattcaagaaatgcttaaagatgaagtaaatgaacattgtcaatttataattctgtagtgtt 38288311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 45582145 - 45582229
Alignment:
Q  51 tggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtag 135  Q
    |||| ||||||||||||   | ||||||||||| |||||||| ||||| ||||||||||||| ||| || |||||||||||||||    
T  45582145 tggttgttgttggtttgtgcaaaatgttattcaggagatgctcaaagacgaagtaaatgaaccatgtcaacttataattttgtag 45582229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 86 - 131
Target Start/End: Complemental strand, 38155376 - 38155331
Alignment:
Q  86 agatgcttaaagatgaagtaaatgaacaatgccagcttataatttt 131  Q
    |||||||||||||||||||| |||||||||| || |||||||||||    
T  38155376 agatgcttaaagatgaagtacatgaacaatgtcaacttataatttt 38155331  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 38283819 - 38283759
Alignment:
Q  77 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 137  Q
    ||||||| || |||||| |||||||||| ||||||||||| |||||| || ||||||||||    
T  38283819 ttattcatgacatgcttcaagatgaagttaatgaacaatgtcagcttgtagttttgtagtg 38283759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 44958707 - 44958767
Alignment:
Q  56 gttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatg 116  Q
    ||||||||||||   | ||||||||||| ||||||||||||||| |||||||| |||||||    
T  44958707 gttgttggtttgagtataatgttattcaagagatgcttaaagataaagtaaatcaacaatg 44958767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 38185682 - 38185566
Alignment:
Q  15 ctatataggtgctcatagttggattaattactgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaa 114  Q
    ||||| ||||||| |||| |||| |||| |||  | || | |||||||||||| |  ||||| ||||||  ||||||||||||||||||||  | | |||    
T  38185682 ctatacaggtgctgatagatggactaatgactcagatgattgttgttggtttgaatggaatgatattcataagatgcttaaagatgaagtacttcaccaa 38185583  T
Q  115 tgccagcttataatttt 131  Q
    || || |||||||||||    
T  38185582 tgtcaacttataatttt 38185566  T

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Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 47 - 139
Target Start/End: Original strand, 9666623 - 9666715
Alignment:
Q  47 gtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    |||||||| || ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||    
T  9666623 gtggtggttgtcgttggtttggagagaatgttattcatgagatgtttaaagatgaagtaaatgaacaatgccaacttataattttgtagtgtt 9666715  T

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Target: chr6 (Bit Score: 69; Significance: 8e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 25570603 - 25570695
Alignment:
Q  46 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 138  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  25570603 tgtggtggtgattgttggttaggaaagaatgttattcacgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattctgtagtgt 25570695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 46 - 138
Target Start/End: Original strand, 26005071 - 26005163
Alignment:
Q  46 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 138  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||    
T  26005071 tgtggtggtgattgttggttaggaaagaatgttattcacgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattctgtagtgt 26005163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 4161523 - 4161461
Alignment:
Q  77 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||| ||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  4161523 ttattcatgaggtgcttaaagatgaagtagatgaacaatgccaacttataattttgtagtgtt 4161461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 4223143 - 4223085
Alignment:
Q  77 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtag 135  Q
    ||||||| ||| |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  4223143 ttattcatgaggtgcttacagatgaagtagatgaacaatgccaacttataattttgtag 4223085  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 26105095 - 26105144
Alignment:
Q  46 tgtggtggtggttgttggtttggagagaatgttattcacgagatgcttaa 95  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||| ||||    
T  26105095 tgtggtggtgattgttggttaggaaagaatgttattcacgagatgtttaa 26105144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 138
Target Start/End: Original strand, 26123895 - 26123936
Alignment:
Q  97 gatgaagtaaatgaacaatgccagcttataattttgtagtgt 138  Q
    |||||||||||||||||||| |||||||||||| ||||||||    
T  26123895 gatgaagtaaatgaacaatgtcagcttataattctgtagtgt 26123936  T

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Target: scaffold0176 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 83 - 138
Target Start/End: Complemental strand, 20529 - 20474
Alignment:
Q  83 acgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgt 138  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  20529 acgagatgcttaaggatgaagtaaatgaacaatgtcagcttataattttgtagtgt 20474  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 52214803 - 52214741
Alignment:
Q  77 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtgtt 139  Q
    ||||||| ||| ||||||||||||||||| ||||||||| ||| |||||||||||||||||||    
T  52214803 ttattcatgaggtgcttaaagatgaagtagatgaacaatcccaacttataattttgtagtgtt 52214741  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 77 - 137
Target Start/End: Complemental strand, 2220638 - 2220578
Alignment:
Q  77 ttattcacgagatgcttaaagatgaagtaaatgaacaatgccagcttataattttgtagtg 137  Q
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T  2220638 ttattcatgacatgcttcaagatgaagttaatgaacaatgtcagcttatagttttttagtg 2220578  T

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