View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9807_high_6 (Length: 359)
Name: NF9807_high_6
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9807_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 310
Target Start/End: Complemental strand, 36659473 - 36659183
Alignment:
| Q |
20 |
gatcttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaagggacaaaatgggaaaattgagg |
119 |
Q |
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| T |
36659473 |
gatcttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggt--gatgtttacatcgcttaagggacaaaatgggaaaattgagg |
36659376 |
T |
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| Q |
120 |
agcttgcgagaagcatgaaaggtgagata-aaaattctcttttgaaaattgtatttttgaatgacattttttctccaaaagtgnnnnnnnaaaggataca |
218 |
Q |
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| T |
36659375 |
agcttgcgagaagcatgaaaggtgagataaaaaattctcttttggaaattgtatttttgaatgacattttttcaccaaaagtgtttttttaaaggataca |
36659276 |
T |
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| Q |
219 |
aaatttaaatatttattagttgtgtacgtccaaactaattttcaggtgtgagaagtttcttca-nnnnnnngctttaaatcaaaagcccaaaa |
310 |
Q |
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| T |
36659275 |
aaatttaaatatttattagttgtgtacgtccaaactaattttcaggtgtgaaaagtttcttcattttttttgctttaaatcaaaagcccaaaa |
36659183 |
T |
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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 98
Target Start/End: Complemental strand, 32079370 - 32079295
Alignment:
| Q |
23 |
cttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaagg |
98 |
Q |
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| T |
32079370 |
cttgggaccaaggattttgagtaagggtacatggaggatcgacactcacgtgttaggatgtttacaccgcttaagg |
32079295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 22719080 - 22719155
Alignment:
| Q |
24 |
ttggggccaaggattttgaggaagggtacatggaggatcgacacccacgtggtatgatgtttatatcgcttaaggg |
99 |
Q |
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| T |
22719080 |
ttggagccaaggattttgaggaaggatacatggagaatcgacacccgcgtgctaacatgtttacatctcttaaggg |
22719155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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