View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9807_high_7 (Length: 346)
Name: NF9807_high_7
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9807_high_7 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 346
Target Start/End: Original strand, 55716198 - 55716526
Alignment:
| Q |
18 |
catcattctattcattcaaaactcatttcatcaatccaaacatactcatgttactatgctatcctccattattcatatcatccccaaagtcaccccattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55716198 |
catcattctattcattcaaaactcatttcatcaatccaaacatactcatgttactatgctatcctccattattcatatcatccccaaagtcaccccattg |
55716297 |
T |
|
| Q |
118 |
ctcctcctatcagttagtaaaatgacattttatcgagacaaaatcaactatactagttttcttcctgaaactaatcagagcactagaacagagtgccaac |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55716298 |
ctcctcctatcagttagtaaaatgacattttattgagacaaaatcaactatactagttttcttcctgaaactaatcagagcactagaacagagtgccaac |
55716397 |
T |
|
| Q |
218 |
tattttctcagttgagtcttcccagcaaaaaatcgggtttcctcatcattagaagtgacttgcttctaagtccttacaaataaaccattcaagtaaaact |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55716398 |
tattttctcagttgagtcttcccagcaaaaaatcgggtttcctcatcattagaagtgacttgcttctaagtccttacaaataaaccattcaagtaaaact |
55716497 |
T |
|
| Q |
318 |
gtatttgagtttgctaaagaacaacaaaa |
346 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
55716498 |
gtatttgagtttgctaaagaacaacaaaa |
55716526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University