View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9807_low_11 (Length: 295)
Name: NF9807_low_11
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9807_low_11 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 8 - 295
Target Start/End: Complemental strand, 50019627 - 50019349
Alignment:
| Q |
8 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
107 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||| |
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| T |
50019627 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttttctggaaaaccagcaaagtcgcgctacatctagttgcgctc |
50019529 |
T |
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| Q |
108 |
ca------gaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactgtgttttggtgactgtccaccta |
201 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
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| T |
50019528 |
cacgtaaagaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgaatgt--------------ccaccta |
50019443 |
T |
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| Q |
202 |
ttttctgctactgcatgtttatatgctcaatagagattacttaaattgaagcactaatgttagttacagtattattatgcatgtatcttagctt |
295 |
Q |
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||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
50019442 |
ttttctgttactgcatgtttatatgttcaatagagattacttaaattgaagcactaatgttagttacaatattattatgcatgtatcttagctt |
50019349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 11473992 - 11474168
Alignment:
| Q |
8 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
107 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
11473992 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctc |
11474090 |
T |
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| Q |
108 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
179 |
Q |
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| T |
11474091 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttaattttacttgttttggtgactg |
11474168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 28246044 - 28245883
Alignment:
| Q |
8 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
107 |
Q |
| |
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||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || ||| |
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| T |
28246044 |
aagcaaaggggttcaggg-tacaacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctccaccta--------- |
28245955 |
T |
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| Q |
108 |
cagaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
179 |
Q |
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|||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
28245954 |
aagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactg |
28245883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 131; Significance: 5e-68; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 25382105 - 25382281
Alignment:
| Q |
8 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
107 |
Q |
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||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25382105 |
aagcaaaggggttcaagg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctagccgcgctc |
25382203 |
T |
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| Q |
108 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
179 |
Q |
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| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
25382204 |
cacctaaagaaaaaagttcacaggtatatgagttggtatttaaagtacttgttttaattttacttgttttggtgactg |
25382281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 3e-63; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 38252874 - 38252698
Alignment:
| Q |
8 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
107 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
38252874 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctc |
38252776 |
T |
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| Q |
108 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
179 |
Q |
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| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
38252775 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactg |
38252698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 43156668 - 43156844
Alignment:
| Q |
8 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
107 |
Q |
| |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
43156668 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcatagtcgcgctacatctaggcgcgctc |
43156766 |
T |
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| Q |
108 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
179 |
Q |
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| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
43156767 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttagttttacttgttttggtgactg |
43156844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 119; Significance: 8e-61; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 8 - 179
Target Start/End: Complemental strand, 19307736 - 19307560
Alignment:
| Q |
8 |
aagcaaaggggtttaggggtacgacccggttcaaagcgaattaagcgacacaaaagttgtctggaaaaacagcaaagtcgcgctacatctagccgcgctc |
107 |
Q |
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||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||||| |
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| T |
19307736 |
aagcaaaggggttcaggg-tacgacccggttcaaagcgaattaagcgacacaaaagttgtttggaaaaacagcatagtcgcgctacatctaggcgcgctc |
19307638 |
T |
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| Q |
108 |
c------agaaaaaagttcacaggtatatgagttggtatttagagtacttgttttaattttacttgttttggtgactg |
179 |
Q |
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| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
19307637 |
cacctaaagaaaaaagttcacaggtatatgagttgttatttaaagtacttgttttatttttacttgttttggtgactg |
19307560 |
T |
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