View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9807_low_15 (Length: 241)
Name: NF9807_low_15
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9807_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 46108232 - 46108010
Alignment:
| Q |
1 |
tgcacgagtccacaacaataagacataaaatattcaacattgtcctcttgtttggacggaggtacctacatatcctacatatctgggttgatcacagtta |
100 |
Q |
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| T |
46108232 |
tgcacgagtccacaacaataagacataaaatattcaacattgtcctcttggttggacggaggtacctacatatcctacatatctgggttgatcacagtta |
46108133 |
T |
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| Q |
101 |
taaacaactcagaatgacagtaaacaaacatattgaataatttatttagtttttcagacaaaatagaatggtgtacctcaaaaacgataggaaagagcaa |
200 |
Q |
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| T |
46108132 |
taaacaactcagaatgacagtaaacaaacatattgaatgatttatttagtttttcagacaaaatagaatggtgtacctcaaaaacgataggaaagagcaa |
46108033 |
T |
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| Q |
201 |
tattggacataggtcgaggtaac |
223 |
Q |
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| T |
46108032 |
tactggacataggtcgaggtaac |
46108010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 106 - 176
Target Start/End: Complemental strand, 46108366 - 46108296
Alignment:
| Q |
106 |
aactcagaatgacagtaaacaaacatattgaataatttatttagtttttcagacaaaatagaatggtgtac |
176 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||| |
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| T |
46108366 |
aactcagaatgacagtaaacaaacatattgagtaatttatttagtttttcagagaaattagaatggtgtac |
46108296 |
T |
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