View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9807_low_20 (Length: 222)

Name: NF9807_low_20
Description: NF9807
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9807_low_20
NF9807_low_20
[»] chr1 (6 HSPs)
chr1 (1-201)||(50019145-50019348)
chr1 (1-197)||(11474195-11474391)
chr1 (1-197)||(28245660-28245856)
chr1 (27-65)||(10465027-10465065)
chr1 (27-65)||(43734679-43734717)
chr1 (27-65)||(50673558-50673596)
[»] chr2 (2 HSPs)
chr2 (1-197)||(38252475-38252671)
chr2 (1-197)||(43156871-43157067)
[»] chr6 (2 HSPs)
chr6 (1-197)||(19307337-19307533)
chr6 (11-197)||(10123887-10124073)
[»] chr5 (1 HSPs)
chr5 (1-197)||(25382308-25382505)
[»] chr4 (1 HSPs)
chr4 (27-199)||(48794164-48794336)
[»] chr8 (1 HSPs)
chr8 (27-65)||(25862746-25862784)
[»] chr7 (1 HSPs)
chr7 (29-65)||(27979093-27979129)
[»] chr3 (2 HSPs)
chr3 (29-65)||(5911504-5911540)
chr3 (28-97)||(22982375-22982446)


Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 50019348 - 50019145
Alignment:
Q  1 aataattttgcataatcattttagggtgatggagtatcttgttctacg---cctccaacttatgagccaccacaagtatatgaggatcaagtcaattaca 97  Q
    ||||||||| ||||||||||||||  ||||||||||||||||||| ||   ||||||||||||||||| ||||||| | |||||||||||||||||||||    
T  50019348 aataattttacataatcattttagtttgatggagtatcttgttctgcgtcgcctccaacttatgagcccccacaagcacatgaggatcaagtcaattaca 50019249  T
Q  98 ctgccatgctaatggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
     || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50019248 ttgtcatgctaatggtaatttcaaaagcaaattcataaggaactattcatacatttaacaagtatcgtgattctaatttttaagttgttattaatgtagg 50019149  T
Q  198 caat 201  Q
    ||||    
T  50019148 caat 50019145  T

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Target: chr1; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 11474195 - 11474391
Alignment:
Q  1 aataattttgcataatcattttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactg 100  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |    
T  11474195 aataatttgacataatcattttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacag 11474294  T
Q  101 ccatgctaatggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  11474295 ccatgctaatggtaatttcaaaaacaaattcataaagaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtagg 11474391  T

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Target: chr1; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 28245856 - 28245660
Alignment:
Q  1 aataattttgcataatcattttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactg 100  Q
    ||||||||  ||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||| | |||||  |||||||||||||||      
T  28245856 aataatttgacataatcattttaggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacaa 28245757  T
Q  101 ccatgctaatggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  28245756 ccatgctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtagg 28245660  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 10465065 - 10465027
Alignment:
Q  27 tgatggagtatcttgttctacgcctccaacttatgagcc 65  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  10465065 tgatggagtatcttgttccgcgcctccaacttatgagcc 10465027  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 43734717 - 43734679
Alignment:
Q  27 tgatggagtatcttgttctacgcctccaacttatgagcc 65  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  43734717 tgatggagtatcttgttccgcgcctccaacttatgagcc 43734679  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 50673596 - 50673558
Alignment:
Q  27 tgatggagtatcttgttctacgcctccaacttatgagcc 65  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  50673596 tgatggagtatcttgttccgcgcctccaacttatgagcc 50673558  T

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Target: chr2 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 38252671 - 38252475
Alignment:
Q  1 aataattttgcataatcattttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactg 100  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |    
T  38252671 aataatttgacataatcattttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacag 38252572  T
Q  101 ccatgctaatggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  38252571 ccatgctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtagg 38252475  T

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Target: chr2; HSP #2
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 43156871 - 43157067
Alignment:
Q  1 aataattttgcataatcattttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactg 100  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||| ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |    
T  43156871 aataatttgacataatcattttaggttgatggagtatcttgttctgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacag 43156970  T
Q  101 ccatgctaatggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  43156971 ccatgctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtagg 43157067  T

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Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 19307533 - 19307337
Alignment:
Q  1 aataattttgcataatcattttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactg 100  Q
    ||||||||  ||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |    
T  19307533 aataatttgacataatcattttaggttgatggagtatcttgttttgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacag 19307434  T
Q  101 ccatgctaatggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  19307433 ccatgctaatggtaatttcaaaaacaaattcataatgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtagg 19307337  T

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Target: chr6; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 11 - 197
Target Start/End: Complemental strand, 10124073 - 10123887
Alignment:
Q  11 cataatcattttagggtgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaat 110  Q
    ||||||||||||||| ||||||||||||||||| | ||||| ||||||||||||| ||||||| | |||||  ||||||||||||||| |||||||||||    
T  10124073 cataatcattttaggttgatggagtatcttgttatgcgcctacaacttatgagcccccacaagcacatgagtctcaagtcaattacacagccatgctaat 10123974  T
Q  111 ggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
    ||||||||||||| ||||||||||   ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  10123973 ggtaatttcaaaaacaaattcatattgaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtagg 10123887  T

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Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 25382308 - 25382505
Alignment:
Q  1 aataattttgcataatcattttagggtgatggagtatcttgttctacgcctccaacttatgagccacc-acaagtatatgaggatcaagtcaattacact 99  Q
    ||||||||  ||||||||||||||| ||||||||||||||||||| ||||| |||||||||| || || ||||| | || ||  |||||||||||||||     
T  25382308 aataatttgacataatcattttaggttgatggagtatcttgttctgcgcctacaacttatgatccccccacaagcacataagtctcaagtcaattacaca 25382407  T
Q  100 gccatgctaatggtaatttcaaaagcaaattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtagg 197  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||    
T  25382408 gccatgctaatggtaatttcaaaaacaaattcataaggaactattcatacattcaacaagtatcgtgatgctaatttttaagttgttattaatgtagg 25382505  T

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Target: chr4 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 27 - 199
Target Start/End: Original strand, 48794164 - 48794336
Alignment:
Q  27 tgatggagtatcttgttctacgcctccaacttatgagccaccacaagtatatgaggatcaagtcaattacactgccatgctaatggtaatttcaaaagca 126  Q
    ||||||||||||||||||| | ||||||||||||| ||| ||||||| | ||||||||||| |||||||||| |||||||| ||||||||||||||| ||    
T  48794164 tgatggagtatcttgttctgcacctccaacttatgcgcccccacaagcacatgaggatcaattcaattacacagccatgctgatggtaatttcaaaaaca 48794263  T
Q  127 aattcataagaaactattcatacatttaacaagtatcgtgattctaatttttaaattgttattaatgtaggca 199  Q
    |||||||||| |||||| ||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  48794264 aattcataaggaactatacatacatttaacatgtatcgtgatgctaatttttaagttgttattaatgtaggca 48794336  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 25862746 - 25862784
Alignment:
Q  27 tgatggagtatcttgttctacgcctccaacttatgagcc 65  Q
    ||||||||||||||||||  |||||||||||||||||||    
T  25862746 tgatggagtatcttgttccgcgcctccaacttatgagcc 25862784  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 27979093 - 27979129
Alignment:
Q  29 atggagtatcttgttctacgcctccaacttatgagcc 65  Q
    ||||||||||||||||  |||||||||||||||||||    
T  27979093 atggagtatcttgttccgcgcctccaacttatgagcc 27979129  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 5911504 - 5911540
Alignment:
Q  29 atggagtatcttgttctacgcctccaacttatgagcc 65  Q
    ||||||||||||||||  |||||||||||||||||||    
T  5911504 atggagtatcttgttccgcgcctccaacttatgagcc 5911540  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 22982375 - 22982446
Alignment:
Q  28 gatggagtatcttgttctacgcctccaact--tatgagccaccacaagtatatgaggatcaagtcaattaca 97  Q
    ||||||||||||||||| || |||||||||  |||||| | ||| ||||| ||||||| ||||||| |||||    
T  22982375 gatggagtatcttgttccacacctccaacttatatgaggccccataagtacatgaggagcaagtcagttaca 22982446  T

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