View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9808_high_1 (Length: 384)
Name: NF9808_high_1
Description: NF9808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9808_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 132 - 362
Target Start/End: Original strand, 39698699 - 39698910
Alignment:
| Q |
132 |
gaattgaatcttctcctgtcatttttattcagtcacccattcttttcttaattcaatggttgattgatttgtcgatgaaaaagaaaacaacgtagagaaa |
231 |
Q |
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| T |
39698699 |
gaattgaatcttctcctgtcatttttatccagtcaccccttcttttcttaattcaatggttgattgatttgtcgatgaaaaagaaaacagcgtagagaga |
39698798 |
T |
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| Q |
232 |
agaaacatatagtttgaatagttaagattagtgtagctctaacaacatgagaaaaatggtaggagatgatacaaatcctttattttcctcctaaatgatg |
331 |
Q |
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| T |
39698799 |
agaaacata--gtttgaatggttaagattagtgtagcgctaacaacatgagaaaaatggtagg-----------------tattttcctcctaaatgatg |
39698879 |
T |
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| Q |
332 |
ttgggtcaccagaggagcttaggggaccgtc |
362 |
Q |
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| T |
39698880 |
ttgggtcacgaggggagctcaggggaccgtc |
39698910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 39698573 - 39698643
Alignment:
| Q |
1 |
agaccaaaccaagtaaaaatcaaactaaactaagtgagttctagagccaacactaacacacaaactcaagtagatt |
76 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39698573 |
agaccaaaccaagtaaaaatcaaac-----taagtgagttctagagccaacactaacacacaaactcaagtagatt |
39698643 |
T |
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