View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9808_high_6 (Length: 240)
Name: NF9808_high_6
Description: NF9808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9808_high_6 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Original strand, 55384981 - 55385204
Alignment:
| Q |
17 |
aatgacatgaccccaacaatatttgacaatcaatattaccgagacattatgatgggaagaggtttgcttggtattgactcgagcatttctagagatccac |
116 |
Q |
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| T |
55384981 |
aatgacatgaccccaacaatatttgacaatcaatattaccgagacattatgatgggaagaggtttgcttggtattgactcgagcatttctagagatccac |
55385080 |
T |
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| Q |
117 |
gaactgcacccattgtcatgaggtttgctatggatcagagctacttctttgagaacttctcatctgcatttgttaagctttctgctagcaatgttctcac |
216 |
Q |
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| T |
55385081 |
gaactgcacccattgtcatgaggtttgctatggatcagagctacttctttgagaacttctcatctgcatttgttaagctttctgctagcaatgttctcac |
55385180 |
T |
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| Q |
217 |
aactatgcaaggtgaagtcagaag |
240 |
Q |
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| T |
55385181 |
aaatattcaaggtgaagtcagaag |
55385204 |
T |
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