View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9808_low_12 (Length: 219)
Name: NF9808_low_12
Description: NF9808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9808_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 95 - 142
Target Start/End: Original strand, 24931853 - 24931900
Alignment:
| Q |
95 |
aagttgaaatcttcaaacacaaaccaatttggataaggatcttattac |
142 |
Q |
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| T |
24931853 |
aagttgaaatctccaaagacaaaccaatttgtataaggatcttattac |
24931900 |
T |
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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 218
Target Start/End: Original strand, 24932000 - 24932037
Alignment:
| Q |
181 |
attggtacagagacaggcaagaccactagctctagaat |
218 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |
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| T |
24932000 |
attgttacagagacaggcaagaccactagctctagaat |
24932037 |
T |
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