View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9808_low_13 (Length: 215)
Name: NF9808_low_13
Description: NF9808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9808_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 20 - 199
Target Start/End: Original strand, 51115239 - 51115418
Alignment:
| Q |
20 |
atgcacttgagtcctgataaaacaacgaagtcttcaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgt |
119 |
Q |
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| T |
51115239 |
atgcacttgagtcctgataaaacaacgaagtctccaaggctctcaagtcgtacttcaaacatccttagggagttttcaaggaaaaaagcaacttgttcgt |
51115338 |
T |
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| Q |
120 |
gattatgagaaacaagttgcgctggtgtaaggccagtattgtcggtcaccatcatatcttccttttttcctccagccttt |
199 |
Q |
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| T |
51115339 |
gattatgagaaacaagttgcgatggtgtaaggccagtattgtcggtcaccatcatatcttccttttttcctccagccttt |
51115418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Original strand, 51106008 - 51106056
Alignment:
| Q |
122 |
ttatgagaaacaagttgcgctggtgtaaggccagtattgtcggtcacca |
170 |
Q |
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|||| |||| |||| ||| | |||||||||||||||||||||||||||| |
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| T |
51106008 |
ttatcagaagcaagctgcaccggtgtaaggccagtattgtcggtcacca |
51106056 |
T |
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