View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9808_low_2 (Length: 703)
Name: NF9808_low_2
Description: NF9808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9808_low_2 |
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| [»] chr1 (7 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 684; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 684; E-Value: 0
Query Start/End: Original strand, 1 - 703
Target Start/End: Complemental strand, 32253320 - 32252617
Alignment:
| Q |
1 |
agaacacgtggacagaatggtttggaagaaactatctgcagtgcaagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253320 |
agaacacgtggacagaatggtttggaagaaactatctgcagtgcaagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtg |
32253221 |
T |
|
| Q |
101 |
caggtcgcatcagtgatgttaacagtttaaccctcccaatcctccgcaatttacgcctcagtgccgaatatgttctcctctacagggtatgcataaaact |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253220 |
caggtcgcatcagtgatgttaacagtttaaccctcccaatcctccgcaatttacgcctcagtgccgaatatgttctcctctacagggtatgcataaaact |
32253121 |
T |
|
| Q |
201 |
aat-atttaaccaatgtgtacatttctatgatgtgataagtcaaattaatgaaatttaatgaactaatcaataacatgtactatgcagaatggtatatat |
299 |
Q |
| |
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||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253120 |
aattatttaaccaatgtgtacatttctatgatgtgataagttaaattaatgaaatttaatgaactaatcaataacatgtactatgcagaatggtatatat |
32253021 |
T |
|
| Q |
300 |
gctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaaggtaacgcagtgttcgacg |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32253020 |
gctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaaggtaacgcagtgttcgacg |
32252921 |
T |
|
| Q |
400 |
acaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttgagtatgtggtgttcaagac |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32252920 |
acaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttgagtatgtggtgttcaagac |
32252821 |
T |
|
| Q |
500 |
aaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggccttcgtccacgtgatgtcact |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32252820 |
aaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggccttcgtccacgtgatgtcact |
32252721 |
T |
|
| Q |
600 |
caaatcaagttcagtggaaaccgtggtcctctagttcaccctcaatctcaaccacaatctcagtaacacaatcacaatatcaataaaacgatgcatgcta |
699 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
32252720 |
caaatcaagttcagtggaaaccgtggtcctctagttcaccctcaatctcaaccacaatctcagtaaaacaatcacaatatcaataaaacaatgcatgcta |
32252621 |
T |
|
| Q |
700 |
tgca |
703 |
Q |
| |
|
|||| |
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|
| T |
32252620 |
tgca |
32252617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 285 - 703
Target Start/End: Complemental strand, 32248285 - 32247867
Alignment:
| Q |
285 |
cagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaaggta |
384 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| | |
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| T |
32248285 |
cagaatggcatatatgctccacactggaacatcaacgccaacagccttttgtacgtgattagaggacaaggaagagttaggatagtgaactgccaaggca |
32248186 |
T |
|
| Q |
385 |
acgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttgagta |
484 |
Q |
| |
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|||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| || || ||||||||||| ||||| |
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| T |
32248185 |
acgcggtgttcgatgacaatgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaacgaagaagcattagagta |
32248086 |
T |
|
| Q |
485 |
tgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggccttcgt |
584 |
Q |
| |
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|||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| ||||| ||| ||||||||| |
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| T |
32248085 |
tgtggttttcaagacaaacgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgcgaggttcttgaaaatgctttcggccttcgt |
32247986 |
T |
|
| Q |
585 |
ccacgtgatgtcactcaaatcaagttcagtggaaaccgtggtcctctagttcaccctcaatctcaaccacaatctcagtaacacaatcacaatatcaata |
684 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| ||||| ||||||||||| |||||| |
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| T |
32247985 |
ccacgtgatgtcactcaaatcaagttcagtggaaaccgtggtcctttggttcatcctcaatctcaaccacaatcttagtaaaacaatcacaatctcaata |
32247886 |
T |
|
| Q |
685 |
aaacgatgcatgctatgca |
703 |
Q |
| |
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|||| |||||||||||||| |
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| T |
32247885 |
aaacaatgcatgctatgca |
32247867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 285 - 646
Target Start/End: Complemental strand, 32242455 - 32242094
Alignment:
| Q |
285 |
cagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaaggta |
384 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32242455 |
cagaatggcatatatgctccacactggaacatcaacgccaacagccttttgtacgtgattagaggacaaggaagagttaggatagtgaactgccaaggta |
32242356 |
T |
|
| Q |
385 |
acgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttgagta |
484 |
Q |
| |
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|||||||||| || |||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||| || || ||||||||||| ||||| |
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| T |
32242355 |
acgcagtgtttgatgacaatgtaagaaggggacagttgttggtggtgccacaaaacttcgtggtggcggaacaagcagggaacgaagaagcattagagta |
32242256 |
T |
|
| Q |
485 |
tgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggccttcgt |
584 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| |||||||||| ||||| ||| ||||||||| |
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| T |
32242255 |
tgtggttttcaagacaaacgacctagctgctgttaaccatgtgaagcaggtgttcagggccacccctcgtgaggttcttgaaaatgctttcggccttcgt |
32242156 |
T |
|
| Q |
585 |
ccacgtgatgtcactcaaatcaagttcagtggaaaccgtggtcctctagttcaccctcaatc |
646 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
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|
| T |
32242155 |
ccacgtgatgtcactcaaatcaagttcagtggaaaccgtggtcctttggttcaccctcaatc |
32242094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 4 - 191
Target Start/End: Complemental strand, 32242745 - 32242558
Alignment:
| Q |
4 |
acacgtggacagaatggtttggaagaaactatctgcagtgcaagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtgcag |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32242745 |
acacgtggacagaatggtttggaagaaactatctgcagtgcaagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtgcag |
32242646 |
T |
|
| Q |
104 |
gtcgcatcagtgatgttaacagtttaaccctcccaatcctccgcaatttacgcctcagtgccgaatatgttctcctctacagggtatg |
191 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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|
| T |
32242645 |
gtcgcatcagtgatgttaacagtttaactctcccaatcctccgcaatttacgcctcagtgctgaatatgttctcctctatagggtatg |
32242558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 140; E-Value: 6e-73
Query Start/End: Original strand, 16 - 191
Target Start/End: Complemental strand, 32248561 - 32248386
Alignment:
| Q |
16 |
aatggtttggaagaaactatctgcagtgcaagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtgcaggtcgcatcagtg |
115 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
32248561 |
aatggtttggaagaaactatctgcagtttaaggattgtggagaacatcgctcgccctgcacgtgcagatctctacaacccacgtgcaggtcgcatcagcg |
32248462 |
T |
|
| Q |
116 |
atgttaacagtttaaccctcccaatcctccgcaatttacgcctcagtgccgaatatgttctcctctacagggtatg |
191 |
Q |
| |
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||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
32248461 |
atgctaacagtttaaccctcccaatccttcgcaatttacgcctcagtgctgaatatgttctcctctacagggtatg |
32248386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 133; E-Value: 9e-69
Query Start/End: Original strand, 282 - 650
Target Start/End: Original strand, 30605327 - 30605695
Alignment:
| Q |
282 |
atgcagaatggtatatatgctccacactggaacatcaacgccaacagcctattgtacgtgataagaggacaaggaagagttaggatagtgaactgccaag |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||| | | ||||||||||||||| |||||| ||| |||| ||||||||||||||||||||||||| ||| |
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|
| T |
30605327 |
atgcagaatggtatatatgctccacactggaccgtgaacgccaacagcctaatgtacgccctaacaggagaaggaagagttaggatagtgaactgtgaag |
30605426 |
T |
|
| Q |
382 |
gtaacgcagtgttcgacgacaatgtaagaagaggacagttgttggtggtgccacaaaactttgtggtggcgcaacaagccggaaatgaagaagcatttga |
481 |
Q |
| |
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| ||||| |||||||||||| || |||| |||||| || ||||||| ||||| ||||||||||||| ||| ||||| ||| | |||||||||||||| |
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| T |
30605427 |
gaaacgccgtgttcgacgactgggtgagaaagggacagatggtggtggtaccacagaactttgtggtggtgcagcaagctggagaggaagaagcatttga |
30605526 |
T |
|
| Q |
482 |
gtatgtggtgttcaagacaaacgacttagctgctgttagccatgtgaagcaggtattcagggccacccctgctgaggttctttcaaatgtttttggcctt |
581 |
Q |
| |
|
||| | |||||||||||||| ||| |||| |||||| | |||| ||| |||| ||||||||||| ||||| ||||||||| ||||||||||||||||| |
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|
| T |
30605527 |
gtacatagtgttcaagacaaatgacggagcttctgttaacaatgtaaagtaggtgttcagggccactcctgcagaggttcttgcaaatgtttttggcctt |
30605626 |
T |
|
| Q |
582 |
cgtccacgtgatgtcactcaaatcaagttcagtggaaaccgtggtcctctagttcaccctcaatctcaa |
650 |
Q |
| |
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| || ||| || || || || | ||| ||||||||||||| ||| | |||||||||||||||||| |
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| T |
30605627 |
cctcaacgcgaagtatctgaattaaagcaaggtggaaaccgtggccctttggttcaccctcaatctcaa |
30605695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 14 - 189
Target Start/End: Original strand, 30604961 - 30605136
Alignment:
| Q |
14 |
agaatggtttggaagaaactatctgcagtgc-aagacttgtggagaacatcgctcgccctgcacatgcagatctctacaacccacgtgcaggtcgcatca |
112 |
Q |
| |
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||||||||||||||||||||||||||||||| |||| | | | ||||||| |||| |||||||| |||||| ||||||||||||||||| || || |||| |
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| T |
30604961 |
agaatggtttggaagaaactatctgcagtgcgaagattcgcg-agaacatagctcaccctgcacgtgcagacctctacaacccacgtgccggacgaatca |
30605059 |
T |
|
| Q |
113 |
gtgatgttaacagtttaaccctcccaatcctccgcaatttacgcctcagtgccgaatatgttctcctctacagggta |
189 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||| || |||||||||| || |||||||||||||| |
|
|
| T |
30605060 |
gcaccgtcaacagtttaaccctcccaatcctccgcaatttacgtcttggtgccgaatacgtagtcctctacagggta |
30605136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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