View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9808_low_5 (Length: 328)
Name: NF9808_low_5
Description: NF9808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9808_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 45515507 - 45515187
Alignment:
| Q |
1 |
ttgtccatacatatgataataaaggaactagtttggccatatcgcaataatcggaatgtgatgatgaagaagaagaaggtgcgttgtctgaaaagggcag |
100 |
Q |
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| T |
45515507 |
ttgtccatacatatgatattaaaggaactagtttggccatatcgcaataatcggaatgtgatgatgaagaagaagaaggtgcgttgtctgaaaagggcag |
45515408 |
T |
|
| Q |
101 |
atgtaagtgaaggacgaagacgacaacagggctttgaattcgatcctgagctgcggtcggtgcttgaacttgcaaccgactccgagttgtctgaaattca |
200 |
Q |
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| T |
45515407 |
atgtaagtgaaggacgaagacgacaacagggctttgaattcgatcctgagctgcggtcggtgcttgaacttgcaaccgactccgagttgtctgaaattca |
45515308 |
T |
|
| Q |
201 |
aacaatccttttcggccccaggtgtttctttttctttctaataataatagtaataataagtgttagttgttactgactaagtaagtacttatcaattatc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45515307 |
aacaatccttttcggccccaggtgtttctttttctttctaataataatagtaataataagtgttagttgttactgactaagtaagtacttatcaattatc |
45515208 |
T |
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| Q |
301 |
agctacttgagtcctttgctt |
321 |
Q |
| |
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||||||||||||||||||||| |
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| T |
45515207 |
agctacttgagtcctttgctt |
45515187 |
T |
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