View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9808_low_6 (Length: 264)
Name: NF9808_low_6
Description: NF9808
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9808_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 38022465 - 38022209
Alignment:
| Q |
1 |
taattgatctattgaannnnnnnaatcagggaaatcacagttaagagagtttgagattactctcacttccttcatctttctccactgtgttttccttgat |
100 |
Q |
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| T |
38022465 |
taattgatctattgaatttttttaatcagggaaatcacagttaagagagtttgagattactctcacttccttcatctttctccactgtgttttccttgat |
38022366 |
T |
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| Q |
101 |
taaagaaatttgttggatcatgacaaaaaatattgcactaacgatctatttgttgttctgaattcaatcatgttggtgtctgattccttgttttgtaatt |
200 |
Q |
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| T |
38022365 |
taaagaaatttgttggatcatcacaaaaaatattgcactaacgatctatttgttgttctgaattcaatcatgttggtgtctgattccttgttttgtaatt |
38022266 |
T |
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| Q |
201 |
gtttatgattagatttgattcttttattatgtatacgatgggaatcctgttttccttt |
258 |
Q |
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| T |
38022265 |
gtttatgattagatttgattcttttattatgtatacgatgggaat-ctgttttccttt |
38022209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 38018271 - 38018175
Alignment:
| Q |
24 |
aatcagggaaatcacagttaagagagtttgagattactctcacttccttcatctttctccactgtgttttcctt-gattaaagaaatttgttggatc |
119 |
Q |
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| T |
38018271 |
aatcaaggaaatcacagtcaagagagtttgtgtttcctctcactcccttaatctttctccattgtgtttttcttagattaaagaaatttgttggatc |
38018175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 38025305 - 38025240
Alignment:
| Q |
55 |
gattactctcacttccttcatctttctccactgtgttttccttgattaaagaaatttgttggatcat |
121 |
Q |
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| T |
38025305 |
gattcctctcacttcctccatctttctccactg-ggtttccatgattaaacaaatttgttggatcat |
38025240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 24 - 121
Target Start/End: Original strand, 18234664 - 18234761
Alignment:
| Q |
24 |
aatcagggaaatcacagttaagagagtttgagattactctcacttccttcatctttctccactgtgttttccttgattaaagaaatttgttggatcat |
121 |
Q |
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||||| |||||||||| ||||| |||| ||||||| |||| |||||||||| |||||| ||||||| || || |||||||||| |||||||||||||| |
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| T |
18234664 |
aatcaaggaaatcacacttaagggagtatgagatttctctaacttccttcacctttcttcactgtggttcccctgattaaagagatttgttggatcat |
18234761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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