View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9809_high_1 (Length: 428)
Name: NF9809_high_1
Description: NF9809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9809_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 11 - 410
Target Start/End: Complemental strand, 35979467 - 35979079
Alignment:
| Q |
11 |
cacagatcgaaattcaaatttaaatttttt-catgcaggaaaaacataaacatgtaaataaacttgaataagtttgacacatgcaaacaaagttgatata |
109 |
Q |
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| T |
35979467 |
cacagatcgaaattcaattttaaatttttttcatgcaggaaaaacataaac------------ttgaataagtttgacacatgcaaacaaagttgatata |
35979380 |
T |
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| Q |
110 |
ctattatattattactgctgaatcaagtcattatttggggtgagaatatgctagtctaagttaggttttgtaatgcctaagtccggcctactttaaaaat |
209 |
Q |
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| T |
35979379 |
ctattatattattactgatgaatcaagtcattatttggggtgagaatatgctagtctaagttaggttttgtaacgcctaagtccggcctactttaaaaat |
35979280 |
T |
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| Q |
210 |
gttaggtctgagtttttccttttagctgccatatgcctattattaagagctgatctgggcttctcgaaagtctgacaaggcttgaaagcctgtacttgaa |
309 |
Q |
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| T |
35979279 |
gttaggtctgagtttttccttttagctgtcatatgcctattattaagagctgatctgggcttctcgaaagtctgacaaggcttgaaagcctgtacttgaa |
35979180 |
T |
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| Q |
310 |
aggtttagttcactatgaggtttcattaaaaagactaacacactaataggtcaaagagattaagttctattttgatatgtaacctccaactccaacatct |
409 |
Q |
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| T |
35979179 |
aggtttagttcactatgaggtttcattaaaaagactaacacactaataggtcaaagagattaagttctattttgatatgtaacctccaactccaacatct |
35979080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 68 - 220
Target Start/End: Complemental strand, 35969296 - 35969138
Alignment:
| Q |
68 |
taaacttgaataagtttgacacatgcaaacaaagttgatatactattatat-----tattactgctgaatcaagtcattatt-tggggtgagaatatgct |
161 |
Q |
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| T |
35969296 |
taaacttgaataagtttgacacatgcaaacaaagttgatatactattactttagtctattaatgatgaaccaggacattgttagggggtgataatatgtt |
35969197 |
T |
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| Q |
162 |
agtctaagttaggttttgtaatgcctaagtccggcctactttaaaaatgttaggtctga |
220 |
Q |
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| T |
35969196 |
agtctaagctaggtattgcaaggcctgagtccggcctactttaaagatgataggtctga |
35969138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 35969041 - 35968990
Alignment:
| Q |
336 |
taaaaagactaacacactaataggtcaaagagattaagttctattttgatat |
387 |
Q |
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| T |
35969041 |
taaaaagactgacacactaataggtcaatgagattaagttctattttgatat |
35968990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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