View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9809_high_2 (Length: 399)
Name: NF9809_high_2
Description: NF9809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9809_high_2 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 370; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 8 - 381
Target Start/End: Complemental strand, 35094735 - 35094362
Alignment:
| Q |
8 |
tcgtggtcgtggttcttgtaagtcttgcactgcttgtgattgcagcagtaatattatatgtccttgttaaaagaagaaaaactaaacaacaagaagaatt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094735 |
tcgtggtcgtggttcttgtaagtcttgcactgcttgtgattgcagcagtaatattatatgtccttgttaaaagaagaaaaactaaacaacaagaagaatt |
35094636 |
T |
|
| Q |
108 |
aggagaaggagctggagtagctgcaaacaccagcaacagggataataataatcaaaagaaaggatcatcatcaaataataatacagacgagggttcggta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094635 |
aggagaaggagctggagtagctgcaaacaccagcaacagggataataataatcaaaagaaaggatcatcatcaaataataatacagacgagggttcggta |
35094536 |
T |
|
| Q |
208 |
agatcacgcgcaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatttgcaagatcttt |
307 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094535 |
agatcacgcacaagcagtaataccagtagcagaaaaggagatagcaagttgtcctttgtgagggaagaagtatcagcacaatttgatttgcaagatcttt |
35094436 |
T |
|
| Q |
308 |
tgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccct |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094435 |
tgagagccgctgctgagatattaggaagtggttgtcacagttcatcctataaggctgctttgttgactggccct |
35094362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University