View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9809_high_3 (Length: 388)
Name: NF9809_high_3
Description: NF9809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9809_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Original strand, 36181922 - 36182280
Alignment:
| Q |
18 |
ccaaccttaatcgattttccatccttgtttatcaatggttttttggtgaaatatctaaggttatagtctctgaaagtacggtaggtaattggatttctaa |
117 |
Q |
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| T |
36181922 |
ccaaccttaatcgattttccatccttgtttatcaatggttttttggtgaaatatctaaggttatagtctctgaaagtacggtacgtaattgggtttctaa |
36182021 |
T |
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| Q |
118 |
tagaggaaccaacatgatatatgatgttatcactaggttgatttgcatgagccatcatagctactataattgcatttaccaccatgtctgctggtatctg |
217 |
Q |
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| T |
36182022 |
tagaggaaccaacatgatatatgatattatcattaggttgatttgcatgagccatcatagctactataattgcatttaccaccatgtctgctggtatctg |
36182121 |
T |
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| Q |
218 |
ctcaaaattcaacatcaatattaactaatgcatcattttgtggaattgatcaaaaacaagaaaatttttatttggtgactcaccacgtcgaaaactgcgt |
317 |
Q |
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| T |
36182122 |
ctcaaaattcaacatcaatattaactaatgcatcattttgtggaattgatcaaaaacaggaaaaaatttatttggtgactcaccacgtcgaaaactgcat |
36182221 |
T |
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| Q |
318 |
cgagatcagccatgaagcttgttaattttcctttaccataagcaacgactatactgtct |
376 |
Q |
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| T |
36182222 |
cgagatccgccatgaagcttgttaattttcctttaccataagcaacgactatactgtct |
36182280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Original strand, 36194256 - 36194325
Alignment:
| Q |
150 |
ctaggttgatttgcatgagccatcatagctactataattgcatttaccaccatgtctgctggtatctgct |
219 |
Q |
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| T |
36194256 |
ctaggttgatttgcatgagccaccatagccactaacattgcattgaccaccatgtcagctggtatctgct |
36194325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 331 - 376
Target Start/End: Complemental strand, 19505977 - 19505932
Alignment:
| Q |
331 |
gaagcttgttaattttcctttaccataagcaacgactatactgtct |
376 |
Q |
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||||| ||||||||||||||||||||||||||| | || ||||||| |
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| T |
19505977 |
gaagcatgttaattttcctttaccataagcaacaattaaactgtct |
19505932 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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