View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9809_low_10 (Length: 264)

Name: NF9809_low_10
Description: NF9809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9809_low_10
NF9809_low_10
[»] scaffold1652 (3 HSPs)
scaffold1652 (30-156)||(196-322)
scaffold1652 (32-136)||(297-398)
scaffold1652 (30-94)||(177-241)
[»] scaffold0902 (5 HSPs)
scaffold0902 (6-94)||(3544-3632)
scaffold0902 (32-99)||(3477-3544)
scaffold0902 (36-75)||(3298-3337)
scaffold0902 (104-160)||(3468-3524)
scaffold0902 (190-230)||(3488-3528)
[»] scaffold1176 (4 HSPs)
scaffold1176 (32-136)||(78-179)
scaffold1176 (30-87)||(46-103)
scaffold1176 (36-75)||(313-352)
scaffold1176 (104-160)||(132-188)
[»] scaffold0002 (3 HSPs)
scaffold0002 (30-89)||(165203-165262)
scaffold0002 (32-136)||(165237-165338)
scaffold0002 (168-230)||(165287-165349)
[»] chr6 (7 HSPs)
chr6 (30-89)||(14248464-14248523)
chr6 (32-136)||(14248388-14248489)
chr6 (30-87)||(14317026-14317083)
chr6 (32-130)||(14316950-14317045)
chr6 (36-75)||(14248242-14248281)
chr6 (168-230)||(14248377-14248439)
chr6 (30-87)||(14351653-14351710)
[»] chr4 (2 HSPs)
chr4 (36-87)||(37245129-37245180)
chr4 (168-230)||(37245114-37245176)
[»] scaffold1801 (1 HSPs)
scaffold1801 (36-75)||(200-239)


Alignment Details
Target: scaffold1652 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: scaffold1652
Description:

Target: scaffold1652; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 156
Target Start/End: Complemental strand, 322 - 196
Alignment:
Q  30 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgag 129  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  322 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaggaggagaagaaatcgtaggcgatggtacttgag 223  T
Q  130 acggaggaggatagatcaacaatggag 156  Q
    | ||||||| | ||||| || ||||||    
T  222 atggaggagtagagatcgacgatggag 196  T

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Target: scaffold1652; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 398 - 297
Alignment:
Q  32 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagac 131  Q
    |||| ||||||||||||||||||| ||||| |||||||||||||  ||||||||||  ||||||||   || |||||||||||||||||||||||||||     
T  398 aggctatggtgcttgagatggaggagtagatatcgacgatggagtcacagcaggagcggcagcaag---aggagaaatcgtaggcgatggtgcttgagat 302  T
Q  132 ggagg 136  Q
    |||||    
T  301 ggagg 297  T

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Target: scaffold1652; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 241 - 177
Alignment:
Q  30 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagc 94  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||    
T  241 gtaggcgatggtacttgagatggaggagtagagatcgacgatggagagacagcaggagcagcagc 177  T

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Target: scaffold0902 (Bit Score: 57; Significance: 7e-24; HSPs: 5)
Name: scaffold0902
Description:

Target: scaffold0902; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 6 - 94
Target Start/End: Original strand, 3544 - 3632
Alignment:
Q  6 ggagtagcaaagggagtaaatatggtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagc 94  Q
    |||| |||| |||||||||| || ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||||| ||||||    
T  3544 ggagcagcagagggagtaaaaattgtaggcgatggtgcttgagttggagggatagagatcgacgatggagtgacagcaggagcagcagc 3632  T

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Target: scaffold0902; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 99
Target Start/End: Original strand, 3477 - 3544
Alignment:
Q  32 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagag 99  Q
    ||||| |||||||||||||||||| |||||||||||||||||||  ||||||||||  ||||||||||    
T  3477 aggcgttggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggagtggcagcaagag 3544  T

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Target: scaffold0902; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 3298 - 3337
Alignment:
Q  36 gatggtgcttgagatggaggggtagagatcgacgatggag 75  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  3298 gatggtgctttagatggaggggtagagatcgccgatggag 3337  T

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Target: scaffold0902; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Original strand, 3468 - 3524
Alignment:
Q  104 agaaatcgtaggcgatggtgcttgagacggaggaggatagatcaacaatggagtcac 160  Q
    |||||||| ||||| |||||||||||| ||||||| | ||||| || ||||||||||    
T  3468 agaaatcgcaggcgttggtgcttgagatggaggagtagagatcgacgatggagtcac 3524  T

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Target: scaffold0902; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 230
Target Start/End: Original strand, 3488 - 3528
Alignment:
Q  190 cttgagatggaggagtagagatgaacaatggagtcacagca 230  Q
    ||||||||||||||||||||||  || ||||||||||||||    
T  3488 cttgagatggaggagtagagatcgacgatggagtcacagca 3528  T

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Target: scaffold1176 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: scaffold1176
Description:

Target: scaffold1176; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 179 - 78
Alignment:
Q  32 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagac 131  Q
    |||||||||||||||||||||||| ||||||||||| |||||||  |||||||||| ||||||   || || |||||| |||||||||||| |||||||     
T  179 aggcgatggtgcttgagatggaggagtagagatcgatgatggagtcacagcaggagcagcagc---aggaggagaaatagtaggcgatggtccttgagat 83  T
Q  132 ggagg 136  Q
    |||||    
T  82 ggagg 78  T

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Target: scaffold1176; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Complemental strand, 103 - 46
Alignment:
Q  30 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 87  Q
    |||||||||||| ||||||||||||||||||||||| | |||||| ||||| ||||||    
T  103 gtaggcgatggtccttgagatggaggggtagagatccaggatggatcgacaacaggag 46  T

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Target: scaffold1176; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 352 - 313
Alignment:
Q  36 gatggtgcttgagatggaggggtagagatcgacgatggag 75  Q
    |||||||||| |||||||||||||||||| ||||||||||    
T  352 gatggtgctttagatggaggggtagagatggacgatggag 313  T

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Target: scaffold1176; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 160
Target Start/End: Complemental strand, 188 - 132
Alignment:
Q  104 agaaatcgtaggcgatggtgcttgagacggaggaggatagatcaacaatggagtcac 160  Q
    |||||||| |||||||||||||||||| ||||||| | ||||| |  ||||||||||    
T  188 agaaatcgcaggcgatggtgcttgagatggaggagtagagatcgatgatggagtcac 132  T

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Target: scaffold0002 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 165262 - 165203
Alignment:
Q  30 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaa 89  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  165262 gtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaa 165203  T

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Target: scaffold0002; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 136
Target Start/End: Complemental strand, 165338 - 165237
Alignment:
Q  32 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagac 131  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||  |||||||||| ||||||   || || |||||| |||||||||||| |||||||     
T  165338 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagc---aggaggagaaatagtaggcgatggtccttgagat 165242  T
Q  132 ggagg 136  Q
    |||||    
T  165241 ggagg 165237  T

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Target: scaffold0002; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 165349 - 165287
Alignment:
Q  168 ggagaaatcgttggcaatggctcttgagatggaggagtagagatgaacaatggagtcacagca 230  Q
    ||||||||||  ||| ||||  ||||||||||||||||||||||  || ||||||||||||||    
T  165349 ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagca 165287  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 14248464 - 14248523
Alignment:
Q  30 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaa 89  Q
    |||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||    
T  14248464 gtaggcgatggtccttgagatggaggggtagagatccaggatggagcgacagcaggagaa 14248523  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 32 - 136
Target Start/End: Original strand, 14248388 - 14248489
Alignment:
Q  32 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgagac 131  Q
    |||||||||| ||||||||||||| |||||||||||| ||||||  |||||||||| ||||||   || || |||||| |||||||||||| |||||||     
T  14248388 aggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagcaggagcagcagc---aggaggagaaatagtaggcgatggtccttgagat 14248484  T
Q  132 ggagg 136  Q
    |||||    
T  14248485 ggagg 14248489  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 14317026 - 14317083
Alignment:
Q  30 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 87  Q
    |||||||||||| |||||||||| |||||||||||| | |||||||||||| ||||||    
T  14317026 gtaggcgatggtccttgagatggtggggtagagatccatgatggagcgacaacaggag 14317083  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 130
Target Start/End: Original strand, 14316950 - 14317045
Alignment:
Q  32 aggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggagaagcagcaagagcagaagaaatcgtaggcgatggtgcttgaga 130  Q
    |||||| ||||||||||| ||||| ||||||||||| |||||||  ||| |||||| ||||||   || || |||||| |||||||||||| |||||||    
T  14316950 aggcgagggtgcttgagacggaggagtagagatcgatgatggagtcacatcaggagcagcagc---agaaggagaaatagtaggcgatggtccttgaga 14317045  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Original strand, 14248242 - 14248281
Alignment:
Q  36 gatggtgcttgagatggaggggtagagatcgacgatggag 75  Q
    |||||||||| |||||||||||||||||||| ||||||||    
T  14248242 gatggtgctttagatggaggggtagagatcgccgatggag 14248281  T

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Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 14248377 - 14248439
Alignment:
Q  168 ggagaaatcgttggcaatggctcttgagatggaggagtagagatgaacaatggagtcacagca 230  Q
    ||||||||||  ||| ||||  ||||||||||||||||||||||  || ||||||||||||||    
T  14248377 ggagaaatcgcaggcgatggtccttgagatggaggagtagagatcgaccatggagtcacagca 14248439  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 87
Target Start/End: Original strand, 14351653 - 14351710
Alignment:
Q  30 gtaggcgatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 87  Q
    ||||||||||||||||||||||| || |||||||  || |||||||  ||||||||||    
T  14351653 gtaggcgatggtgcttgagatggtggagtagagactgatgatggagtaacagcaggag 14351710  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 87
Target Start/End: Original strand, 37245129 - 37245180
Alignment:
Q  36 gatggtgcttgagatggaggggtagagatcgacgatggagcgacagcaggag 87  Q
    |||||||||||||||||||| |||||||||||||||||||  ||||||||||    
T  37245129 gatggtgcttgagatggaggagtagagatcgacgatggagtcacagcaggag 37245180  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 37245114 - 37245176
Alignment:
Q  168 ggagaaatcgttggcaatggctcttgagatggaggagtagagatgaacaatggagtcacagca 230  Q
    |||||||||| |||  ||||  ||||||||||||||||||||||  || ||||||||||||||    
T  37245114 ggagaaatcgctggtgatggtgcttgagatggaggagtagagatcgacgatggagtcacagca 37245176  T

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Target: scaffold1801 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold1801
Description:

Target: scaffold1801; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 36 - 75
Target Start/End: Complemental strand, 239 - 200
Alignment:
Q  36 gatggtgcttgagatggaggggtagagatcgacgatggag 75  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  239 gatgatgctttagatggaggggtagagatcgacgatggag 200  T

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