View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9809_low_4 (Length: 387)
Name: NF9809_low_4
Description: NF9809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9809_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 23989383 - 23989746
Alignment:
| Q |
1 |
gttgaatgtagtttcgatcgagggtcagtgcaatgagaatttgtatgaggatcatcacgggtggaatgatgattacaatgagtatctatggaacggactg |
100 |
Q |
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| T |
23989383 |
gttgaatgtagtttcgatcgagggtcagtgcaatgagaatttgtatgaggatcatcacgggtggaatgatgattacaatgagtatctatggaacggactg |
23989482 |
T |
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| Q |
101 |
cacaatgagatctttgaacatgtttacagttgtttcccggtctcatctcttaaaagggtatgtcacatgatgtatatctaacttttctaacccaatttaa |
200 |
Q |
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| T |
23989483 |
cacaatgagatctttgaacatgtttacagttgtttcccggtctcatctcttaaaagggtatgtcacatgatgtatatctaacttctctaacccaatttaa |
23989582 |
T |
|
| Q |
201 |
ttcatatgcatgttctaaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgttacatctttggcagctcttt |
300 |
Q |
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| T |
23989583 |
ttcatatgcatgttctaaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgttacatctttggcagctcttt |
23989682 |
T |
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| Q |
301 |
atatgcacacaaattgggtaaacagctctttttctatttactatttacttccaaatttatgaat |
364 |
Q |
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| T |
23989683 |
atatgcacacaaattgggtaaacagctctttttctatttactagttacttccaaatttatgaat |
23989746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 23982708 - 23982997
Alignment:
| Q |
11 |
gtttcgatcgagggtcagtgcaatgagaatttgtatgaggatcatcacgggtggaatgatgattacaatg---agtatctatggaacggactgcacaatg |
107 |
Q |
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| T |
23982708 |
gtttcaattgagggtcagtggaatgagaatttgcatgaggaacatcatgggtggaacgatgatgattttgttaaggatctatggaacgcactgcctgatg |
23982807 |
T |
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| Q |
108 |
agatctttgaacatgtttacagttgtttcccggtctcatctcttaaaagggtatgtcacatgatgtatatctaacttttctaacccaatttaattcatat |
207 |
Q |
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||| ||||||||| ||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23982808 |
agacctttgaacaattttacagttgtttaccaatctcgtctcttaaaagggtatgtcacatgatgtatatctaacttctctaacccaatttaattcatat |
23982907 |
T |
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| Q |
208 |
gcatgttctaaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgttacatctttggcagctc |
297 |
Q |
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| T |
23982908 |
gcgtgttttaaaatggttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattgttacatctatggcagctc |
23982997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 101 - 293
Target Start/End: Original strand, 23965494 - 23965688
Alignment:
| Q |
101 |
cacaatgagatctttgaacatgtttacagttgtttcccggtctcatctcttaaaagggtatgtcacatgatgtatatctaacttttctaacccaatttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| | ||||||||||| || |||||||||||| | ||| ||||||||||| ||||||||||||| | |
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| T |
23965494 |
cacaatgagatctttgaacatgtttacagttgtttctctgtctcatctctgaatagggtatgtcaccttatgcatatctaacttctctaacccaatttca |
23965593 |
T |
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| Q |
201 |
ttcatatgcatgttctaaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaaattgcattattg--ttacatctttggca |
293 |
Q |
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| T |
23965594 |
ttcttatgtacagtttaaaattgttttacaacgacaatcaatcactactcaccaagaaaactaacaaattgtaatatagaattacatctttggca |
23965688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 296 - 342
Target Start/End: Original strand, 23983058 - 23983104
Alignment:
| Q |
296 |
tctttatatgcacacaaattgggtaaacagctctttttctatttact |
342 |
Q |
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| T |
23983058 |
tctttatgtgcacacaaattgggtagacaactctttttctatttact |
23983104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 42351381 - 42351330
Alignment:
| Q |
216 |
taaaattgttttacaccgacaatcaatcacaacttgctaagaaaacaaacaa |
267 |
Q |
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| T |
42351381 |
taaaattgttttaaaccgacaatcaatcataacttgctaagacaacaaacaa |
42351330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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