View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9809_low_7 (Length: 282)
Name: NF9809_low_7
Description: NF9809
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9809_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 272
Target Start/End: Complemental strand, 21508196 - 21507940
Alignment:
| Q |
15 |
tcaaatttcaccgtaaaataaaaacataatggtgttaaaaataattatccctttcctatttcaattagcagcttcaaagggtgttgaaattataattatc |
114 |
Q |
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| T |
21508196 |
tcaaatttcactgtaaaataaaa-cagaagggtgttgaaactaattatccctttcctatttcaattagcagcttcaaagggtgttgaaattataattatc |
21508098 |
T |
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| Q |
115 |
cctttcctatttgaattagcttcacgtagggataattgactaacttactacaaagcattcaattagcaggtttagtgcatcgaacatttagtgttgttgt |
214 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||| |
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| T |
21508097 |
cctttcctatttcaattagcttcacgtagggataattgactaacttactacaaagcattcaattagcaggcttaatgcatcgaacatttggtgttgttgt |
21507998 |
T |
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| Q |
215 |
tgtaaagaagaacaagaagggtgtgggtggtgggtttgaaagctgatttattctatgc |
272 |
Q |
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| T |
21507997 |
tgtaaagaagaataagaagggtgagggtggtgggtttgaaagatgatttattctatgc |
21507940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 30249255 - 30249014
Alignment:
| Q |
15 |
tcaaatttcaccgtaaaataaaaacataatggtgttaaaaataattatccctttcctatttcaattagcagcttcaaagggtgttgaaattataattatc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30249255 |
tcaaatttcaccgtaaaataaaaacataatggtgttaaaaataattatccctttcctatttcaattagcagcttcaaagggtgttgaaattataattatc |
30249156 |
T |
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| Q |
115 |
cctttcctatttgaattagcttcacgtagggataattgactaacttactacaaagcattcaattagcaggtttagtgcatcgaacatttagtgttgttgt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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| T |
30249155 |
cctttcctatttgaattagcttcacgtagggataattgactaac------------------ttagcaggcttagtgcatcgaatatttagtgttgttgt |
30249074 |
T |
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| Q |
215 |
tgtaaagaagaacaagaagggtgtgggtggtgggtttgaaagctgatttattctatgcag |
274 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
30249073 |
tgtaaagaagaacaagaagggtgtgggtggtgggtttgaaagatgatttattctatgcag |
30249014 |
T |
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