View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9810_high_3 (Length: 474)
Name: NF9810_high_3
Description: NF9810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9810_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 442; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 9 - 458
Target Start/End: Original strand, 55421591 - 55422040
Alignment:
| Q |
9 |
gcagagacacaactgagactattagagcagctgatttgggttaaaacactccattcaagcaatctaaaaataaataagggccaatgtaacaaaaaatcat |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
55421591 |
gcagagacacaactgagactattagagcagctgatttgggttaaaacactccattcaagcaatctaaaaataaataagggccaatgtaacaaaaaatcgt |
55421690 |
T |
|
| Q |
109 |
tgattgataaagcattaaacaggaggagatggtggtgatagaagaattaggaaagaaatgaaatgaataagtacctctgaaaatgccaatctgtcagcaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55421691 |
tgattgataaagcattaaacaggaggagatggtggtgatagaagaattaggaaagaaatgaaatgaataagtacctctgaaaatgccaatctgtcagcaa |
55421790 |
T |
|
| Q |
209 |
catcatttgtccactcaaaaaagcgggttaactgacgagtgagtcttaaaacggagacgggaactgtagttacattagcatcttggcccgcaagcctctc |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55421791 |
catcatttgtccactcaaaaaagcgggttaactgacgagtgagtcttaaaacggagacgggaactgtagttacattagcatcttggcccgcaagcctctc |
55421890 |
T |
|
| Q |
309 |
gcacaatgtaatcacctcttgggttgtccacgcacgaggaccagcaaatgtgagaagtttaccattgattttttcatttcgtaaggctataaaagttaag |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
55421891 |
gcacaatgtaatcacctcttgggttgtccacgcacgaggaccagcaaatgtgagaagtttaccgttgattttttcatttcgtaaggctataaaagttaag |
55421990 |
T |
|
| Q |
409 |
cgagctatatcctaaaaacagaggcagacatatgaatgaagtgatggatt |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55421991 |
cgagctatatcctaaaaacagaggcagacatatgaatgaagtgatggatt |
55422040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University