View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9810_high_9 (Length: 242)
Name: NF9810_high_9
Description: NF9810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9810_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 242
Target Start/End: Original strand, 46146025 - 46146247
Alignment:
| Q |
20 |
taacccttgttgtaagatggcttacacctgctggtattagctttgcaaaaccaaaatcagctaccttggcttgaaattctgtgtctaatagaacattgct |
119 |
Q |
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| T |
46146025 |
taacccttgttgtaagatggcttacacctgctggtattagctttgcaaaaccaaaatcagctaccttggcttgaaattctgtgtctaatagaacattgct |
46146124 |
T |
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| Q |
120 |
tgcctttatgtctctatgaattatgtgaggatttgcctcatggtgcaagtaccttaataagaaaaaatattcatcatagacggcagattaaagctctact |
219 |
Q |
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| T |
46146125 |
tgcctttatgtctctatgaattatgtgaggatttgcctcatggtgcaagtaccttaataagaaaaaatattcatcatagacggcagattaaagctctact |
46146224 |
T |
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| Q |
220 |
tttgaagaagctatattaacaca |
242 |
Q |
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| T |
46146225 |
tttgaagaagctatattaacaca |
46146247 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 80
Target Start/End: Original strand, 53682300 - 53682330
Alignment:
| Q |
50 |
ctggtattagctttgcaaaaccaaaatcagc |
80 |
Q |
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| T |
53682300 |
ctggtattagctttgcaaaaccaaaatcagc |
53682330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 173
Target Start/End: Original strand, 53682361 - 53682423
Alignment:
| Q |
111 |
aacattgcttgcctttatgtctctatgaattatgtgaggatttgcctcatggtgcaagtacct |
173 |
Q |
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| T |
53682361 |
aacattacttgccttgatgtctctatgaatgatgtggggtgtgacctcatggtgcaagtacct |
53682423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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