View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9810_low_10 (Length: 241)
Name: NF9810_low_10
Description: NF9810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9810_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 35454634 - 35454405
Alignment:
| Q |
1 |
ctgaaccaagaaaatattctataaggtttggattccagtttatctaatatatcatcaataacggtggattatcatttggtatggttgataagtctgctca |
100 |
Q |
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| T |
35454634 |
ctgaaccaagaaaatattctataaggtttggattccagtttacctaatatatca---ataacggtggattatcatttggtatggttgataagtctgctca |
35454538 |
T |
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| Q |
101 |
tggagatatttcaagcattcc-ttgtaatactcataactcaaacatgggtctaaaaaaggaagcagtggggagatgagcatatcagaattttaatattca |
199 |
Q |
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| T |
35454537 |
tggagatatttcaagcattcccttgtaatactcataactcaaacatgggtctaaaaaaggaagcagtggggcgatgagcatatcagaattttaatattca |
35454438 |
T |
|
| Q |
200 |
agtttt--tctcctcacatatttggtgttgatg |
230 |
Q |
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| T |
35454437 |
agtttttctctcctcacatgtttggtgttgatg |
35454405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 149
Target Start/End: Complemental strand, 35441087 - 35441007
Alignment:
| Q |
66 |
ggattatcatttggtatggttgataagtctgctcatggagatatttcaagcattccttgtaatactcataactcaaacatgggt |
149 |
Q |
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| T |
35441087 |
ggatcatcatttggtatggttgatacgtctgctcatggagatattccaagcatgactt---ttactcagaactcaaacatgggt |
35441007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 35449100 - 35449055
Alignment:
| Q |
73 |
catttggtatggttgataagtctgctcatggagatatttcaagcat |
118 |
Q |
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| T |
35449100 |
catttcgtatggttgatatgtctgctcatggagatttttcaagcat |
35449055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 57 - 152
Target Start/End: Complemental strand, 51575383 - 51575288
Alignment:
| Q |
57 |
aataacggtggattatcatttggtatggttgataagtctgctcatggagatatttcaagcattccttgtaatactcataactcaaacatgggtcta |
152 |
Q |
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| T |
51575383 |
aatagcggtggttcatcatttggtatggttgatgtgtctcctcgtggtgatatttcaagcatgccttataatactcggaactcaaacatgggtcta |
51575288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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