View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9810_low_15 (Length: 203)
Name: NF9810_low_15
Description: NF9810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9810_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 6e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 48816012 - 48816088
Alignment:
| Q |
16 |
gttaatgaatgaagaaacgcaccgtatgcctctcaaagtctcagtcaacaaaaactacccaaatcaaattatcacct |
92 |
Q |
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| T |
48816012 |
gttaatgaatgaagaaacgcaccgtatgcctctcaaagtctcagtcaacaaaaactacccaaatcaaattatcacct |
48816088 |
T |
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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 125 - 188
Target Start/End: Original strand, 48816121 - 48816183
Alignment:
| Q |
125 |
ttgcgtggtcaaatactcatttcagtgaaaaggaaaagaataaaagcgcgagggtgggtgtagt |
188 |
Q |
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| T |
48816121 |
ttgcgtggtcaaata-tcatttcagtgaaaaggaaaagaataaaagcgcgagggtgggtgtagt |
48816183 |
T |
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