View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9810_low_6 (Length: 256)
Name: NF9810_low_6
Description: NF9810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9810_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41825619 - 41825854
Alignment:
| Q |
1 |
attcgtcggagaagcattatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgatttttgttaaaaccaaaaacagcttt |
100 |
Q |
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| T |
41825619 |
attcgtctgagaagcattatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgatttttgttaaaaccaaaaacagcttt |
41825718 |
T |
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| Q |
101 |
caaatagtactgcatagaaattatgagactgtcaagctacggaattaaccaaaagaaatttgttaaatagtagtaacacaacaaggaaaaaagttgagga |
200 |
Q |
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| T |
41825719 |
caaatagtactgcatagaaatt-tgagactgtcaagctatggaattaaccaaaagaaatttgttaaatagtagtaacacaacaaggaaaaaagttgagga |
41825817 |
T |
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| Q |
201 |
attcaattaaatcggttgaaaacataccagcaaaact |
237 |
Q |
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| T |
41825818 |
attcaattaaatcggttgaaaacataccagcaaaact |
41825854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 17 - 236
Target Start/End: Original strand, 41819024 - 41819247
Alignment:
| Q |
17 |
ttatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgatttttgttaaaaccaaaaacagctttcaaatagtactgcata |
116 |
Q |
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| T |
41819024 |
ttatacctgagaaaagatggaaccaattccgaccatcatcagaagttctgagaactgatttttgttgaaaccaaaaacagctttcaaatagtactgcata |
41819123 |
T |
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| Q |
117 |
gaaattatgagactgtc----aagctacggaattaaccaaaagaaatttgttaaatagtagtaacacaacaaggaaaaaagttgaggaattcaattaaat |
212 |
Q |
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| T |
41819124 |
tgaattatgagactgtcgattatactatggaatttattaaaagaaatttgttaaatagtagtgacacaacaaggaaaaaatttgaggacttcaattaaat |
41819223 |
T |
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| Q |
213 |
cggttgaaaacataccagcaaaac |
236 |
Q |
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| T |
41819224 |
cagttgaaaacataccagcaaaac |
41819247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 24461020 - 24460961
Alignment:
| Q |
18 |
tatacctgagaaaagattgaaccaattccgaccatcatcagaagttctgagaactgattt |
77 |
Q |
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| T |
24461020 |
tatacttgagaaaagattgaaccaattctgaccatcatcagaagttctgagaactgattt |
24460961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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