View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9810_low_7 (Length: 252)
Name: NF9810_low_7
Description: NF9810
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9810_low_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36411947 - 36411714
Alignment:
| Q |
1 |
ttacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36411947 |
ttacaagaacagtttctcaagcaatctttctcacattcttccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttaaaa |
36411848 |
T |
|
| Q |
101 |
ctttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaattt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36411847 |
ctttgttaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccaacccatctctactctcataccaatcacgtggaaattt |
36411748 |
T |
|
| Q |
201 |
tggttcaaaaccaagtaaacaagtacacttaaag |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36411747 |
tggttcaaaaccaagtaaacaagtacacttaaag |
36411714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 36417278 - 36417045
Alignment:
| Q |
1 |
ttacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaa |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
36417278 |
ttacaagaacagtttctcaagcaatctttctcacattcttccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttaaaa |
36417179 |
T |
|
| Q |
101 |
ctttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaattt |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
36417178 |
ctttgttaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccaacccatctctactctcataccaatcacgtggaaattt |
36417079 |
T |
|
| Q |
201 |
tggttcaaaaccaagtaaacaagtacacttaaag |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
36417078 |
tggttcaaaaccaagtaaacaagtacacttaaag |
36417045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 36404632 - 36404399
Alignment:
| Q |
2 |
tacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaac |
101 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| |||||| |||||||||||||||||||||| ||||||||||||| ||||||||| |||||||| |
|
|
| T |
36404632 |
tacaagagcaatttctcaagcattctttctcacattcttccaaactcaaaccatctatggcaactgctccagatatatcagcaactttcacacttacaac |
36404533 |
T |
|
| Q |
102 |
tttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaatttt |
201 |
Q |
| |
|
||| |||||||||||||||||||||||| |||||||||| | || |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36404532 |
ttttataaacccttctccattcccacaaatagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcacgtggaaatttt |
36404433 |
T |
|
| Q |
202 |
ggttcaaaaccaagtaaacaagtacacttaaagt |
235 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| |
|
|
| T |
36404432 |
ggttcaaaaccaagtaaacaagtgcacttaaagt |
36404399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 36397688 - 36397466
Alignment:
| Q |
13 |
tttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaactttgctaaacc |
112 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
36397688 |
tttctcaagcattctttctcacattcatccaaactcaaaccatctatggtaactgccccagatatatcaggaactttcaagcttacaactttgataaacc |
36397589 |
T |
|
| Q |
113 |
cttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaattttggttcaaaacc |
212 |
Q |
| |
|
|||| ||||||||||| |||||||||||| | || |||||||| |||||| |||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
36397588 |
cttcgccattcccacagacagatgcacctttcttccttacacaccctcccgacccatctctactctcataccaatcgcttggaaattttggttcaaaacc |
36397489 |
T |
|
| Q |
213 |
aagtaaacaagtacacttaaagt |
235 |
Q |
| |
|
||||||||| || |||||||||| |
|
|
| T |
36397488 |
aagtaaacacgtgcacttaaagt |
36397466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 36426112 - 36425879
Alignment:
| Q |
2 |
tacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaac |
101 |
Q |
| |
|
||||||| || ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||| | ||||||||||| || |||||||| |
|
|
| T |
36426112 |
tacaagagcagtttctcaagcattctttctcacattcatccaaattcaaaccatctatggcaactgccgtagacgtttcaggaacttttacgcttacaac |
36426013 |
T |
|
| Q |
102 |
tttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaatttt |
201 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||||||||| | |||||||||||||| || |||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
36426012 |
tttgataaacccttctccatttccacaaacagatgcacctttctttcttacacatccacctgacccatctcgactctcataccaatctcgtggaaatttt |
36425913 |
T |
|
| Q |
202 |
ggttcaaaaccaagtaaacaagtacacttaaagt |
235 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
36425912 |
ggttcgaaaccaagtaaacaagtacacttaaagt |
36425879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 36369341 - 36369108
Alignment:
| Q |
2 |
tacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaac |
101 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||| |||||| |||||||| || | ||||| ||| ||||| |||| |||||||||| || ||||| |
|
|
| T |
36369341 |
tacaagagcagtttctcaagcattctttctcacattcttccaaactcaaaccacctttagcaaccgccacagatgtatcgggaactttcaagctcacaac |
36369242 |
T |
|
| Q |
102 |
tttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaa-ttt |
200 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||| ||||| | || |||||||| |||||| |||||||||| |||||||||||||||||||||| ||| |
|
|
| T |
36369241 |
tttgacaaacccttctccattcccacaaaccgatacacctttcttccttacacaccctcccgacccatctcta-tctcataccaatcacgtggaaatttt |
36369143 |
T |
|
| Q |
201 |
tggttcaaaaccaagtaaacaagtacacttaaagt |
235 |
Q |
| |
|
|| ||||||||||||||||||||| |||||||||| |
|
|
| T |
36369142 |
tgcttcaaaaccaagtaaacaagtgcacttaaagt |
36369108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 36373960 - 36373727
Alignment:
| Q |
2 |
tacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaac |
101 |
Q |
| |
|
||||||| || ||||||||||| |||| ||| ||||| |||||| ||| |||| || | | ||||||| ||||||||||||||||||||| ||| |||| |
|
|
| T |
36373960 |
tacaagagcagtttctcaagcattcttcctcgcattcttccaaactcagaccacctttagtaactgccacagatatatcaggaactttcaagcttgcaac |
36373861 |
T |
|
| Q |
102 |
tttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaatttt |
201 |
Q |
| |
|
|||| |||||||||||||||||| ||||| |||||| ||| | || |||||||| ||||| ||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
36373860 |
tttgataaacccttctccattccgacaaatagatgcgcctttcttccttacacaccctcctgacccatctcttctctcataccaatcacgtggaaatttt |
36373761 |
T |
|
| Q |
202 |
ggttcaaaaccaagtaaacaagtacacttaaagt |
235 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |
|
|
| T |
36373760 |
ggttcaaaacctggtagacaagtacacttaaagt |
36373727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 36387920 - 36387686
Alignment:
| Q |
2 |
tacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaac |
101 |
Q |
| |
|
|||||||||| ||| |||||| |||||||||||||| |||||| |||||||| | | ||||||||| ||||| ||||||||||||||| |||||||| |
|
|
| T |
36387920 |
tacaagaacagttttgcaagcattctttctcacattcttccaaactcaaaccacttttagcaactgccacagatgtatcaggaactttcaagcttacaac |
36387821 |
T |
|
| Q |
102 |
tttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatc-tctactctcataccaatcacgtggaaattt |
200 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| | ||| | || |||||||| |||||| |||||| |||| ||| ||||||||||||||||||||| |
|
|
| T |
36387820 |
tttgataaacccttctccattctcacaaacagacgagcctttcttccttacacaccctcccgtcccatcttctattctgataccaatcacgtggaaattt |
36387721 |
T |
|
| Q |
201 |
tggttcaaaaccaagtaaacaagtacacttaaagt |
235 |
Q |
| |
|
|||||| ||||||||||||||| ||||||||||| |
|
|
| T |
36387720 |
gggttcataaccaagtaaacaagaacacttaaagt |
36387686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 36433969 - 36433748
Alignment:
| Q |
2 |
tacaagaacaatttctcaagcaatctttctcacattcatccaaagtcaaaccatctatggcaactgccccagatatatcaggaactttcacccttacaac |
101 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| |||||||| |||||| |||||||| || ||||| |||| ||| ||||||||||||||| || |||| |
|
|
| T |
36433969 |
tacaagaacagtttctgaagcattctttttcacattcttccaaactcaaaccacctttggcatttgccatcgatgtatcaggaactttcaagctgacaat |
36433870 |
T |
|
| Q |
102 |
tttgctaaacccttctccattcccacaaacagatgcacctctttttcttacacatcctcccagcccatctctactctcataccaatcacgtggaaatttt |
201 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| ||| | || |||||||| ||||| |||||||| ||||||||||||||| | |||| |||| |
|
|
| T |
36433869 |
tttgataaacccttctccattcccacaaacagatgaaccgttcttccttacacaccctcctgacccatctccactctcataccaatcgcctggagatttg |
36433770 |
T |
|
| Q |
202 |
ggttcaaaaccaagtaaacaag |
223 |
Q |
| |
|
|||||||||||| ||||||||| |
|
|
| T |
36433769 |
ggttcaaaaccaggtaaacaag |
36433748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University