View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9811_high_2 (Length: 518)
Name: NF9811_high_2
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9811_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 435; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 16 - 504
Target Start/End: Original strand, 160354 - 160842
Alignment:
| Q |
16 |
agaacaagaaataagaaaatgttatgcagagaaatttcccgacataagcagagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160354 |
agaacaagaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatcatggaa |
160453 |
T |
|
| Q |
116 |
cttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatgattaca |
215 |
Q |
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| T |
160454 |
cttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatgattaca |
160553 |
T |
|
| Q |
216 |
ttctaacacaagcttggctcagcaaaagcatcacaaggggcttgattttgttggaaaatcagataccnnnnnnngtattgaagcatctttatgacactgt |
315 |
Q |
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| T |
160554 |
ttctaacacaagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagatacctttttttgtattgaagcatctttatgacactgt |
160653 |
T |
|
| Q |
316 |
cgtcccgaacgacgacaaaaaaccaaatcatgaagattttcttgatcttgcactcgagtattttgcattctacgacactcagaaatcgtcatcacttgaa |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
160654 |
cgtcccgaacgacgacaaaaaaccaaatcatgaagattttcttgatcttgcactcgagtattttgcattctacgacactcagaaatcgtcatcacttgaa |
160753 |
T |
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| Q |
416 |
acgaagtttgttttggataagaatcagacnnnnnnntattattatgtgagtggcgtaattggtgatgttggtagtggtaattcagtttc |
504 |
Q |
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| T |
160754 |
acgaagtttgttttggataagaatcagacaaaaaaatattattatgtgagtggcgtaattggtgatgttggtagtggtaattcagtttc |
160842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 10 - 417
Target Start/End: Original strand, 151913 - 152320
Alignment:
| Q |
10 |
aagcagagaacaagaaataagaaaatgttatgcagagaaatttcccgacataagcagagagaaatttgtggaaacaattttgttggatgctgttttcatc |
109 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
151913 |
aagcaaagaacaacaaataagaaaatgttatgcagagaaatttcccaacataagcaaagagaaatttgtggaaacaattttgttggatgctgttttcatc |
152012 |
T |
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| Q |
110 |
atggaacttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatg |
209 |
Q |
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| T |
152013 |
atggaacttttgttgagaaacagttcatggaagtcggatacatcaaaacatgaacatgaatacaagcaatccaagtcatttagatggaaacatagtgatg |
152112 |
T |
|
| Q |
210 |
attacattctaacacaagcttggctcagcaaaagcatcacaaggggcttgattttgttggaaaatcagataccnnnnnnngtattgaagcatctttatga |
309 |
Q |
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| T |
152113 |
attacattctaacacaagcttggctcagcaaaagcatcacaagggacttgattttgttggaaaatcagataccattttttgtattgatggatctttacca |
152212 |
T |
|
| Q |
310 |
cactgtcgtcccgaacgacgacaaaaaaccaaatcatgaagattttcttgatcttgcactcgagtattttgcattctacgacactcagaaatcgtcatca |
409 |
Q |
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||||||||||| |||| |||||||||| | | |||| | ||||| |||||||||||| ||||||||||||||||| ||||||||||||||| ||||| |
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| T |
152213 |
aactgtcgtccctaacggcgacaaaaaagaagaccatgcaagttttcatgatcttgcacttgagtattttgcattctatgacactcagaaatcggcatca |
152312 |
T |
|
| Q |
410 |
cttgaaac |
417 |
Q |
| |
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|||||||| |
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| T |
152313 |
cttgaaac |
152320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 504
Target Start/End: Original strand, 152326 - 152356
Alignment:
| Q |
474 |
ttggtgatgttggtagtggtaattcagtttc |
504 |
Q |
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| T |
152326 |
ttggtgatgttggtagtggtaattcagtttc |
152356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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