View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9811_high_3 (Length: 421)
Name: NF9811_high_3
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9811_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 2443586 - 2443331
Alignment:
| Q |
1 |
tgttggtcggttgaggttaatgagaagaaaatctgaaaggtgcgtggttgatttggcattccaagcttttggtgatttgcagggtgaggaacgaaaggat |
100 |
Q |
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| T |
2443586 |
tgttggtcggttgaggttaatgagaagaaaatctgaaaggtgcgtggttgatttggcattccaagcttttggtgatttgcagggtgaggaacgaaaggat |
2443487 |
T |
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| Q |
101 |
ttgatgcaaccaagtgagggagatcaatgaagtaattgatggaataaaagtgttatctttgcattagagtttgagtagattgaaaatacatgcgtcaact |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443486 |
ttgatgcaaccaagtgagggagattgatgaagtaattgatgggataaaagtgttatctttgcattagagtttgagtagattgaaaatacatgcgtcaact |
2443387 |
T |
|
| Q |
201 |
tctttttaaggttggttgctgtcttgtctttggggttcggatgtgagctgtcctgg |
256 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2443386 |
gctttttaaggttggttgctgtcttgtctttggggttcggatgtgagctgtcctgg |
2443331 |
T |
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