View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9811_high_6 (Length: 267)
Name: NF9811_high_6
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9811_high_6 |
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| [»] scaffold0008 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 51 - 252
Target Start/End: Complemental strand, 41113342 - 41113141
Alignment:
| Q |
51 |
atttcaattatctgtctttttaattttattatattttgatccattctgttatgttatttcattgggtatcatagaattttatgattttgattgtttcacc |
150 |
Q |
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| T |
41113342 |
atttcaattatctgtctttttaattttattatattttgatccattctgttatgttatttcattgggtatcatagaattttttgattttgattgtttcacc |
41113243 |
T |
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| Q |
151 |
ttcataaagggttgaaaaatcttaattcaaggtcaagtttttcatttgttaataactatgtctactactgtataatatatgtttattattgcttctctgc |
250 |
Q |
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| T |
41113242 |
ttcataaagggttgaaaaatcttaattcaaggtcaagtttttcatttgttaataactatgtctgctactgtataatatatgtttattattgcttctttgc |
41113143 |
T |
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| Q |
251 |
tt |
252 |
Q |
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|| |
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| T |
41113142 |
tt |
41113141 |
T |
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Target: scaffold0008 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 86917 - 86873
Alignment:
| Q |
195 |
tttgttaataactatgtctactactgtataatatatgtttattat |
239 |
Q |
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| T |
86917 |
tttgttaataactatgtctgctactatataatatatgtttattat |
86873 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 24923971 - 24924015
Alignment:
| Q |
195 |
tttgttaataactatgtctactactgtataatatatgtttattat |
239 |
Q |
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| T |
24923971 |
tttgttaataactatgtctgctactatataatatatgtttattat |
24924015 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 13822353 - 13822398
Alignment:
| Q |
195 |
tttgttaataactatgtctactactgtataatatatgtttattatt |
240 |
Q |
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| T |
13822353 |
tttgttaataactatgtctgctactatataatatatgtttgttatt |
13822398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 234
Target Start/End: Complemental strand, 22353368 - 22353329
Alignment:
| Q |
195 |
tttgttaataactatgtctactactgtataatatatgttt |
234 |
Q |
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| T |
22353368 |
tttgttaataactatgtctgctactatataatatatgttt |
22353329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 22052562 - 22052606
Alignment:
| Q |
195 |
tttgttaataactatgtctactactgtataatatatgtttattat |
239 |
Q |
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|||||| |||||||||||| ||||| ||||||||| ||||||||| |
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| T |
22052562 |
tttgttcataactatgtctgctactatataatataggtttattat |
22052606 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 239
Target Start/End: Original strand, 44362947 - 44362991
Alignment:
| Q |
195 |
tttgttaataactatgtctactactgtataatatatgtttattat |
239 |
Q |
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|||||| |||||||||||| ||||| ||||||||| ||||||||| |
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| T |
44362947 |
tttgttcataactatgtctgctactatataatataggtttattat |
44362991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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