View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9811_low_1 (Length: 875)

Name: NF9811_low_1
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9811_low_1
NF9811_low_1
[»] chr2 (7 HSPs)
chr2 (18-865)||(3387496-3388344)
chr2 (791-860)||(39711523-39711592)
chr2 (18-70)||(3394012-3394064)
chr2 (738-830)||(39229001-39229093)
chr2 (630-681)||(14695111-14695162)
chr2 (570-632)||(30531485-30531546)
chr2 (742-830)||(4724449-4724538)
[»] chr7 (1 HSPs)
chr7 (741-830)||(10623451-10623540)
[»] chr6 (2 HSPs)
chr6 (705-829)||(3008703-3008831)
chr6 (761-833)||(29333803-29333876)
[»] chr8 (2 HSPs)
chr8 (783-826)||(28180442-28180485)
chr8 (568-614)||(33012589-33012635)
[»] chr5 (1 HSPs)
chr5 (717-825)||(43168611-43168723)
[»] chr4 (2 HSPs)
chr4 (747-860)||(38011484-38011598)
chr4 (630-695)||(18402873-18402938)
[»] chr3 (1 HSPs)
chr3 (571-604)||(54260041-54260074)


Alignment Details
Target: chr2 (Bit Score: 729; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 18 - 865
Target Start/End: Original strand, 3387496 - 3388344
Alignment:
Q  18 gttggttgaataattttgcggtagaaacgttgcatggcttcttctataagcttcctatcttaattgaaaactttgtttcttaattgtgttttggtttgaa 117  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387496 gttggttgaataattttgcggtagaaatgttgcatggcttcttctataagcttcctatcttaattgaaaactttgtttcttaattgtgttttggtttgaa 3387595  T
Q  118 agttgttgttatatagttatcattttgagtaaattttggagcaaatggggtttcattattttaattttacaattcaaattaggggtatggtgcatccaag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3387596 agttgttgttatatagttatcattttgagtaaattttggagcaaatggggtttcattattttaattttacacttcaaattaggggtatggtgcatccaag 3387695  T
Q  218 aaaatacttaggaatttaaagggagaaaaccaaagtacaaaaagggtacaaatgtttgattttcgggcagtcatgtttggaaccgcctcaactattttgt 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  3387696 aaaatacttaggaatttaaagggagaaaaccaaagtacaaaaagggtacaaatgtttgattttctggccgtcatgtttggaaccgcctcaactattttgt 3387795  T
Q  318 gggattatgtatgtgtggccatattcttatagttttttgttgattttaatttggttaaatgggggtaacgttaattcaaatccaccgaaatggtcactcc 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387796 gggattatgtatgtgtggccatattcttatagttttttgttgattttaatttggttaaatgggggtaacgttaattcaaatccaccgaaatggtcactcc 3387895  T
Q  418 tcccccattaatttttgggggaaagaaacaggctgcttccttgagataattcaggagaaattgattttggagattaagaaatctatggtttgtctatctt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  3387896 tcccccattaatttttgggggaaagaaacaggctgcttccttgagataattaaggagaaattgattttggagattaagaaatctatggtttgtctatctt 3387995  T
Q  518 atgcaatgttgaatagattaaaacaattaaaataatannnnnnnaaaaggttttgttaacaagtgttctaaagacattgtttaagaagtctataaaagga 617  Q
    |||||| |||| |||||||||||||||||||||||||       |||||||||||||||||||||||||| | | |||||||||||||||||||||||||    
T  3387996 atgcaacgttgcatagattaaaacaattaaaataatatttttttaaaaggttttgttaacaagtgttctagaaatattgtttaagaagtctataaaagga 3388095  T
Q  618 ag-ttttatcttaaaagggtctgattactaacgtattggacttatctatcgatctaagtttttacaggtctcttttgaaacaacagactgtgtttggtgt 716  Q
    || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||| |||||||||||    
T  3388096 agtttttatcttaaaagggtctgattactaacgtattggacttatcaatcgatctaagtttttatgggtctcttttgaaacaacagac-gtgtttggtgt 3388194  T
Q  717 cttgacttcttcgact-tgatatttcagatttgttgagatctaccggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaagagttt 815  Q
    |||||||||||||||| |||||||| ||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3388195 cttgacttcttcgactctgatattttagatttgttgagatctgtaggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaatagttt 3388294  T
Q  816 tatgcttgctgctttattcgtagagcaattggcacttggattttgatgtc 865  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  3388295 tatgcttgctgctttattcatagagcaattggcacttggattttgatgtc 3388344  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 791 - 860
Target Start/End: Complemental strand, 39711592 - 39711523
Alignment:
Q  791 tggtacttcatgcttgaaagagttttatgcttgctgctttattcgtagagcaattggcacttggattttg 860  Q
    |||||||||||||||||||||||||||||||||||||||| |||  |||||  |||||||||||||||||    
T  39711592 tggtacttcatgcttgaaagagttttatgcttgctgctttgttcagagagctgttggcacttggattttg 39711523  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 70
Target Start/End: Original strand, 3394012 - 3394064
Alignment:
Q  18 gttggttgaataattttgcggtagaaacgttgcatggcttcttctataagctt 70  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  3394012 gttggttgaacaattttgcggtagaaacgttgcatggcttcttctataagctt 3394064  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000009
Query Start/End: Original strand, 738 - 830
Target Start/End: Original strand, 39229001 - 39229093
Alignment:
Q  738 tttcagatttgttgagatctaccggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaagagttttatgcttgctgcttt 830  Q
    |||||||| ||||||||| | | | |||||||| ||||| | ||| | || || ||||||||||||| |||||||||||||||||||||||||    
T  39229001 tttcagatctgttgagatttgcagttttcaagtcgtcttgtctgcctacatgccggtacttcatgctcgaaagagttttatgcttgctgcttt 39229093  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 630 - 681
Target Start/End: Complemental strand, 14695162 - 14695111
Alignment:
Q  630 aaagggtctgattactaacgtattggacttatctatcgatctaagtttttac 681  Q
    |||||||||  ||||||||||||||||||||||  |||||||||||| ||||    
T  14695162 aaagggtctagttactaacgtattggacttatcactcgatctaagttcttac 14695111  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 570 - 632
Target Start/End: Original strand, 30531485 - 30531546
Alignment:
Q  570 ttgttaacaagtgttctaaagacattgtttaagaagtctataaaaggaagttttatcttaaaa 632  Q
    |||||||||| ||||||||||| |||||||||||| | ||||| |  ||||||||||||||||    
T  30531485 ttgttaacaaatgttctaaagatattgtttaagaaatttataata-aaagttttatcttaaaa 30531546  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 742 - 830
Target Start/End: Original strand, 4724449 - 4724538
Alignment:
Q  742 agatttgttgagatctaccggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaagag-ttttatgcttgctgcttt 830  Q
    |||||||||||||||  |  ||||||||||||||| ||| | | |||  || ||||| ||||| ||||||| ||||||||||||||||||    
T  4724449 agatttgttgagatcggcaagtttcaagttgtcttgtttacctacactatgatacttaatgctcgaaagagcttttatgcttgctgcttt 4724538  T

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Target: chr7 (Bit Score: 46; Significance: 9e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 741 - 830
Target Start/End: Original strand, 10623451 - 10623540
Alignment:
Q  741 cagatttgttgagatctaccggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaagagttttatgcttgctgcttt 830  Q
    ||||||||||||||||| | |||||||||||||||| | ||| |||||  ||||| |||||||| ||||||| || ||||||||||||||    
T  10623451 cagatttgttgagatctgcaggtttcaagttgtcttgtctgcctgcacattggtatttcatgctcgaaagagcttcatgcttgctgcttt 10623540  T

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Target: chr6 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 705 - 829
Target Start/End: Complemental strand, 3008831 - 3008703
Alignment:
Q  705 tgtgtttggtgtcttgacttcttcgact---tgatatttc-agatttgttgagatctaccggtttcaagttgtcttatttgcttgcacgctggtacttca 800  Q
    ||||||||||| | ||| ||||||||||   |||| |||| ||||||||||||||||   |||||||||| || || | ||| | |||  ||||||||||    
T  3008831 tgtgtttggtggcctgatttcttcgactctatgatgtttccagatttgttgagatctgtaggtttcaagtcgtattgtctgccttcacattggtacttca 3008732  T
Q  801 tgcttgaaagagttttatgcttgctgctt 829  Q
    |||||||||||| ||||||||||||||||    
T  3008731 tgcttgaaagagctttatgcttgctgctt 3008703  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 761 - 833
Target Start/End: Original strand, 29333803 - 29333876
Alignment:
Q  761 ggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaagag-ttttatgcttgctgctttatt 833  Q
    |||||||||||||  | ||||||| ||| | ||||||| || |||||||||| |||||||||| ||||||||||    
T  29333803 ggtttcaagttgtggtgtttgcttacactccggtactttatacttgaaagagcttttatgctttctgctttatt 29333876  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 783 - 826
Target Start/End: Complemental strand, 28180485 - 28180442
Alignment:
Q  783 ttgcacgctggtacttcatgcttgaaagagttttatgcttgctg 826  Q
    |||||||||||||||||||||| |||||||||||||| ||||||    
T  28180485 ttgcacgctggtacttcatgctcgaaagagttttatgtttgctg 28180442  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 568 - 614
Target Start/End: Original strand, 33012589 - 33012635
Alignment:
Q  568 ttttgttaacaagtgttctaaagacattgtttaagaagtctataaaa 614  Q
    ||||| ||||||||||||||||||||||||||||  | |||||||||    
T  33012589 ttttgctaacaagtgttctaaagacattgtttaaagaatctataaaa 33012635  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 717 - 825
Target Start/End: Complemental strand, 43168723 - 43168611
Alignment:
Q  717 cttgacttcttcgact---tgatattt-cagatttgttgagatctaccggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaagag 812  Q
    ||||||||||||||||   |||| ||| ||||| ||||||||||| | |||||||||| || || ||||||| ||||| | |||||  |||| |||||||    
T  43168723 cttgacttcttcgactctctgatgtttgcagatctgttgagatctgcaggtttcaagtcgttttgtttgcttacacgcagatactttgtgctcgaaagag 43168624  T
Q  813 ttttatgcttgct 825  Q
     ||||||||||||    
T  43168623 ctttatgcttgct 43168611  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 747 - 860
Target Start/End: Complemental strand, 38011598 - 38011484
Alignment:
Q  747 tgttgagatctaccggtttcaagttgtcttatttgcttgcacgctggtacttcatgcttgaaagag-ttttatgcttgctgctttattcgtagagcaatt 845  Q
    ||||||||||| | |||||||||||||||  || || | ||| |||||| ||  |||| ||||||| |||||||||||||||||  |||   ||||  ||    
T  38011598 tgttgagatctgcaggtttcaagttgtctcgttcgcctacactctggtatttggtgctcgaaagagcttttatgcttgctgcttagttcagggagctgtt 38011499  T
Q  846 ggcacttggattttg 860  Q
    |||||||||||||||    
T  38011498 ggcacttggattttg 38011484  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 630 - 695
Target Start/End: Complemental strand, 18402938 - 18402873
Alignment:
Q  630 aaagggtctgattactaacgtattggacttatctatcgatctaagtttttacaggtctcttttgaa 695  Q
    |||||||||| |||||||||||||| ||| ||| |||||||| |||| ||||| || | |||||||    
T  18402938 aaagggtctggttactaacgtattgaactcatccatcgatctgagttcttacatgtttgttttgaa 18402873  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 571 - 604
Target Start/End: Complemental strand, 54260074 - 54260041
Alignment:
Q  571 tgttaacaagtgttctaaagacattgtttaagaa 604  Q
    |||||| |||||||||||||||||||||||||||    
T  54260074 tgttaaaaagtgttctaaagacattgtttaagaa 54260041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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