View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9811_low_12 (Length: 232)
Name: NF9811_low_12
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9811_low_12 |
 | |
|
| [»] scaffold0003 (3 HSPs) |
| | |
|
| [»] scaffold0316 (1 HSPs) |
| | |
|
| [»] scaffold0356 (1 HSPs) |
| | |
|
| [»] scaffold0796 (1 HSPs) |
| | |
|
| [»] scaffold0281 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0012 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0003 (Bit Score: 174; Significance: 9e-94; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 8 - 215
Target Start/End: Original strand, 191025 - 191229
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatc |
107 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
191025 |
agatgcacatcaaagttgaaagtacaacataatcattaatctatagaaacaatactatttggaacgtgaaatatctattgtttacaaaagaaaatatatc |
191124 |
T |
|
| Q |
108 |
tctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaattatccaatt |
207 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
191125 |
tctaaaactaattagatgaatagttatacaaaagaataatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgttta---atccaatt |
191221 |
T |
|
| Q |
208 |
tcttcaga |
215 |
Q |
| |
|
|||||||| |
|
|
| T |
191222 |
tcttcaga |
191229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 181262 - 181440
Alignment:
| Q |
16 |
atcaaagttgaaagtacagcataatcattaatctatagaaacactacta-tttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaaaa |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||||| |||| ||||||| |||||| |||| ||||||| | ||| | ||||||||||| |
|
|
| T |
181262 |
atcaaagttgaaagtacaacataatcattaatctatataaacaccactattttggaatgtgaaa----tattatttacaacacaaactgtatctctaaaa |
181357 |
T |
|
| Q |
115 |
ctaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
||||||| ||| | ||| | ||||||||| ||||| ||| ||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
181358 |
ctaattacatggaaagtcgtgcaaaagaataatcatcactt-aaaaactaataaaattcattcatgctaatcaaagtgtttaat |
181440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 188287 - 188380
Alignment:
| Q |
104 |
tatctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | ||||||||| ||||| |||| ||| |||||||||| |||||| |||||||||||||||||| |
|
|
| T |
188287 |
tatctctaaaactaattacatggatagtcgtgcaaaagaataatcatcacttagaaa-ctaataaaattcattcatactaatcaaagtgtttaat |
188380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 159; Significance: 8e-85; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 11818006 - 11818188
Alignment:
| Q |
16 |
atcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaaaac |
115 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
11818006 |
atcaaagttgaaagtacaacataatcattaatctatagaaacactactatttagaacgtgaaatatctattgtttacgaaagaaactatatctctaaaac |
11818105 |
T |
|
| Q |
116 |
taattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11818106 |
taattagatgaatagttctacaaaagaataatcattgcttaaaaaactaataaaatatattcattctaatcacagtgtttaat |
11818188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 41758913 - 41758748
Alignment:
| Q |
23 |
ttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaaaactaattag |
122 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||| |||||||||||||| || ||||||| ||||||| | ||| | || ||||||| |||||||| |
|
|
| T |
41758913 |
ttgaaagtacaacatattcaataatctatagaaatactactatttggaatgtaaaatatca----tttacaacacaaattgtaactctaaagctaattag |
41758818 |
T |
|
| Q |
123 |
atgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtg |
192 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
41758817 |
atgaataattgtacaaaagaataatcattgcttaaaaaactcataaaatacattcattctaatcaaagtg |
41758748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 56793 - 56979
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactacta-tttggaacgtgaaatatctattgtttacaaaagaaaatatat |
106 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||| | ||| | ||| |
|
|
| T |
56793 |
agatgcacatcaaagttgaaagtacaacataatcattaatctatagaaacaccactattttggaatgtgaaatatc----atttacaacacaaattgtat |
56888 |
T |
|
| Q |
107 |
ctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
56889 |
atctaaaactaattacatgaatagttgtgcaaaagaataatcatcactt-taaaactaataaaactcattcattctaatcaaagtgtttaat |
56979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 215
Target Start/End: Original strand, 10045714 - 10045914
Alignment:
| Q |
9 |
gatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactacta-tttggaacgtgaaatatc-tattgtttacaaaagaaaatatat |
106 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||| | | |||||| ||| | ||| |
|
|
| T |
10045714 |
gatgcacatcaaagttgaaagtacaacataatcattaatctatagaaacaccactattttggaatgtgaaatatcatttacgatacaaattaaattgtat |
10045813 |
T |
|
| Q |
107 |
ctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaattatccaat |
206 |
Q |
| |
|
| |||||||||||| |||||||||| | ||||||||| ||||| ||| ||||| ||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
10045814 |
ttttaaaactaattacatgaatagttgtgcaaaagaataatcatcactt-aaaaattaataaa----attcattctaatcaaagtgttta---atccaat |
10045905 |
T |
|
| Q |
207 |
ttcttcaga |
215 |
Q |
| |
|
||||||||| |
|
|
| T |
10045906 |
ttcttcaga |
10045914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 198
Target Start/End: Original strand, 11374052 - 11374232
Alignment:
| Q |
14 |
acatcaaagttgaaagtacagcataatcattaatctatagaaacactacta-tttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||| | ||| | ||||||||| |
|
|
| T |
11374052 |
acatcaaagttgaaagtacaacataatcattaatctatagaaacaccactattttggaatgtgaaatatc----atttacaacacaaactgtatctctaa |
11374147 |
T |
|
| Q |
113 |
aactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||| || ||| ||||| | ||||||||| ||| | ||| ||||||||||||||| |||||| |||||| |||||||||| |
|
|
| T |
11374148 |
aactaactacatggatagtcgtgcaaaagaataatcttcactt-aaaaactaataaaattcattcatattaatcagagtgtttaat |
11374232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0316 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0316
Description:
Target: scaffold0316; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 196
Target Start/End: Original strand, 6200 - 6382
Alignment:
| Q |
14 |
acatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaaa |
113 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||| || |||| || ||||||||||||| ||||||||| | |||||||||||| |
|
|
| T |
6200 |
acatcaaagttgaaagtacaacataatcattaatctatagaaacactgctgtttgaaatgtgaaatatctatcatttacaaaacaggttatatctctaaa |
6299 |
T |
|
| Q |
114 |
actaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgttta |
196 |
Q |
| |
|
| ||||||||||||| ||| ||||||||||| ||||||| ||||||||||||||||||| || |||||||||||||| ||||| |
|
|
| T |
6300 |
attaattagatgaattgttgtacaaaagaataatcattgtttaaaaaactaataaaatacatccattctaatcaaagggttta |
6382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 196
Target Start/End: Complemental strand, 11974751 - 11974569
Alignment:
| Q |
14 |
acatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaaa |
113 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| ||||||||||| | |||| || ||||||||||| | ||||||||| | |||||||||||| |
|
|
| T |
11974751 |
acatcaaagttgaaagtataacataatcattaatcgatagaaacactgttgtttgaaatgtgaaatatctgtcatttacaaaacaggttatatctctaaa |
11974652 |
T |
|
| Q |
114 |
actaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgttta |
196 |
Q |
| |
|
| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| |
|
|
| T |
11974651 |
attaattagatgaatagttgtacaaaagaataatcattgcttaaaaaactaataaaatacatccattctaatcaaagtgttta |
11974569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0356 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0356
Description:
Target: scaffold0356; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 4621 - 4442
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatc |
107 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| ||| ||||||||||||| |||||||||||||| || ||||||| ||||||| | ||| | || | |
|
|
| T |
4621 |
agatgcacatcaaa-ttgaaagtacaacatattcaataatctatagaaatactactatttggaatgtaaaatatca----tttacaacacaaattgtaac |
4527 |
T |
|
| Q |
108 |
tctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtg |
192 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
4526 |
tctaaagctaattagatgaataattgtacaaaagaataatcattgcttaaaaaactcataaaatacattcattctaatcaaagtg |
4442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 192
Target Start/End: Complemental strand, 14107199 - 14107020
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatc |
107 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| ||| ||||||||||||| |||||||||||||| || ||||||| ||||||| | ||| | || | |
|
|
| T |
14107199 |
agatgcacatcaaa-ttgaaagtacaacatattcaataatctatagaaatactactatttggaatgtaaaatatca----tttacaacacaaattgtaac |
14107105 |
T |
|
| Q |
108 |
tctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtg |
192 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
14107104 |
tctaaagctaattagatgaataattgtacaaaagaataatcattgcttaaaaaactcataaaatacattcattctaatcaaagtg |
14107020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 33856931 - 33856766
Alignment:
| Q |
23 |
ttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaaaactaattag |
122 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||| |||||||||||||| || ||||||| ||||||| | ||| | || ||||||| |||||||| |
|
|
| T |
33856931 |
ttgaaagtacaacatattcaataatctatagaaatactactatttggaatgtaaaatatca----tttacaacacaaattgtaactctaaagctaattag |
33856836 |
T |
|
| Q |
123 |
atgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtg |
192 |
Q |
| |
|
||||||| || ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
33856835 |
atgaataattgtacaaaagaataatcattgcttaaaaaactcataaaatacattcattctaatcaaagtg |
33856766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 19195577 - 19195391
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactacta-tttggaacgtgaaatatctattgtttacaaaagaaaatatat |
106 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||| ||||||| | ||| | ||| |
|
|
| T |
19195577 |
agatgcacatcaaagttgaaagtacaacataatcattaatctatagaaacaccactattttggaatgtgaaatatc----atttacaacacaaattgtat |
19195482 |
T |
|
| Q |
107 |
ctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||||||||||| |||||||||| | ||||||||| ||||| ||| ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
19195481 |
atctaaaactaattacatgaatagttgtgcaaaagaataatcatcactt-taaaactaataaaactcattcattctaatcaaagtgtttaat |
19195391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 8 - 192
Target Start/End: Original strand, 31926124 - 31926303
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaatatctattgtttacaaaagaaaatatatc |
107 |
Q |
| |
|
||||| |||||||| ||||||||||| |||| ||| ||||||||||||| |||||||||||||| || ||||||| ||||||| | ||| | || | |
|
|
| T |
31926124 |
agatgcacatcaaa-ttgaaagtacaacatattcaataatctatagaaatactactatttggaatgtaaaatatca----tttacaacacaaattgtaac |
31926218 |
T |
|
| Q |
108 |
tctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtg |
192 |
Q |
| |
|
|||||| ||||||||||||||| || ||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||||| |
|
|
| T |
31926219 |
tctaaagctaattagatgaataattgtacaaaagaataatcattgcttaaaaaactcataaaatacattcattctaatcaaagtg |
31926303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 27515157 - 27515343
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactattt-ggaacgtgaaatatctattgtttacaaaagaaaatatat |
106 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||||| |||| |||||||||| ||||||| | ||| | ||| |
|
|
| T |
27515157 |
agatgcacatcaaagttgaaagtacaacataatcaataatctatagaaacaccactattttggaatgtgaaatatca----tttacaacacaaattgtat |
27515252 |
T |
|
| Q |
107 |
ctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
27515253 |
ctctaaaactaattacatgaatagttgtgcaaaagaataatcatcactt-aaaaactaataaaattcattcattccaatcaaagtgtttaat |
27515343 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 6090198 - 6090383
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactacta-tttggaacgtgaaatatctattgtttacaaaagaaaatatat |
106 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||| |||||||||||||||| |||| ||||||| ||||||||||| ||||||| | ||| | ||| |
|
|
| T |
6090198 |
agatgcacatcaaagttgaaagtacgacataatcaataatctatagaaacaccactattttggaatgtgaaatatct----tttacaacacaaattgtat |
6090293 |
T |
|
| Q |
107 |
ctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
||||||||||| ||| || ||||||| | ||||||||| ||||| ||| ||||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
6090294 |
ctctaaaactagttacat-aatagttgtgcaaaagaataatcatcactt-aaaaactaataaaattcattcattctaatcgaagtgtttaat |
6090383 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 3695453 - 3695546
Alignment:
| Q |
104 |
tatctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | ||||||||| ||||| |||| ||| |||||||||| |||||| |||||||||||||||||| |
|
|
| T |
3695453 |
tatctctaaaactaattacatggatagtcgtgcaaaagaataatcatcacttagaaa-ctaataaaattcattcatactaatcaaagtgtttaat |
3695546 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Original strand, 3697815 - 3697908
Alignment:
| Q |
104 |
tatctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | ||||||||| ||||| |||| ||| |||||||||| |||||| |||||||||||||||||| |
|
|
| T |
3697815 |
tatctctaaaactaattacatggatagtcgtgcaaaagaataatcatcacttagaaa-ctaataaaattcattcatactaatcaaagtgtttaat |
3697908 |
T |
|
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Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 104 - 198
Target Start/End: Complemental strand, 3871335 - 3871242
Alignment:
| Q |
104 |
tatctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||||||||||||||| ||| ||||| | ||||||||| ||||| |||| ||| |||||||||| |||||| |||||||||||||||||| |
|
|
| T |
3871335 |
tatctctaaaactaattacatggatagtcgtgcaaaagaataatcatcacttagaaa-ctaataaaattcattcatactaatcaaagtgtttaat |
3871242 |
T |
|
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Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 14858634 - 14858820
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaac-gtgaaatatctattgtttacaaaagaaaatatat |
106 |
Q |
| |
|
||||| |||||||||| ||||||||| |||||||| |||| |||||||| || ||||||| ||| |||||||||| ||||||| | ||| | ||| |
|
|
| T |
14858634 |
agatgcacatcaaagtcgaaagtacaacataatcaataatttatagaaataccactattttgaaatgtgaaatatca----tttacaacacaaattgtat |
14858729 |
T |
|
| Q |
107 |
ctctaaaactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||| ||||| ||| ||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
14858730 |
ctctaaaactaattacatgaatagttgtgcaaaagaataatcatcactt-aaaaactaataaaattcattcattcaaatcaaagtgtttaat |
14858820 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 134 - 213
Target Start/End: Original strand, 16046413 - 16046489
Alignment:
| Q |
134 |
tacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaattatccaatttcttca |
213 |
Q |
| |
|
||||||||||| || || ||||||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |
|
|
| T |
16046413 |
tacaaaagaataattatcgcttaaaaaactaataaaatacattcattctaatcaaagtgt---ataatccaatttcttca |
16046489 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 16046333 - 16046404
Alignment:
| Q |
8 |
agatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactatttggaacgtgaaata |
80 |
Q |
| |
|
||||| |||||||| |||||| |||| |||||||| ||||||||||||| |||||||||||||| || ||||| |
|
|
| T |
16046333 |
agatgcacatcaaa-ttgaaaatacaacataatcaataatctatagaaatactactatttggaatgtaaaata |
16046404 |
T |
|
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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 28967908 - 28967953
Alignment:
| Q |
153 |
cttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
28967908 |
cttaaaaatctaataaaatttattcattataatcaaagtgattaat |
28967953 |
T |
|
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Target: scaffold0796 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0796
Description:
Target: scaffold0796; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 14 - 198
Target Start/End: Complemental strand, 586 - 406
Alignment:
| Q |
14 |
acatcaaagttgaaagtacagcataatcattaatctatagaaacactacta-tttggaacgtgaaatatctattgtttacaaaagaaaatatatctctaa |
112 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||| |||||||||| ||||||| | ||| | ||||||||| |
|
|
| T |
586 |
acatcaaagttgaaagtacaacataatcattaatatatagaaacaccgctattttggaatgtgaaatatc----atttacaacacaaactgtatctctaa |
491 |
T |
|
| Q |
113 |
aactaattagatgaatagttctacaaaagaatgatcattgcttaaaaaactaataaaatatattcattctaatcaaagtgtttaat |
198 |
Q |
| |
|
||||||||| ||| ||||| | ||||||||| ||||| ||| | ||| ||||||||| |||||| |||||||||||||||||| |
|
|
| T |
490 |
aactaattacatggatagtcgtgcaaaagaataatcatcactt-ataaattaataaaattcattcatactaatcaaagtgtttaat |
406 |
T |
|
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Target: scaffold0281 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 22873 - 22815
Alignment:
| Q |
9 |
gatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactattt |
67 |
Q |
| |
|
|||| |||||| ||||||||||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
22873 |
gatgcacatcatagttgaaagtacaacataatcattaatctatacaaacaccactattt |
22815 |
T |
|
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Target: scaffold0107 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 49463 - 49521
Alignment:
| Q |
9 |
gatggacatcaaagttgaaagtacagcataatcattaatctatagaaacactactattt |
67 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||| |||||| |||||| ||||||| |
|
|
| T |
49463 |
gatgcacatcaaagttgaaagtacaacataatcattattctatacaaacaccactattt |
49521 |
T |
|
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Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 215
Target Start/End: Complemental strand, 55738 - 55679
Alignment:
| Q |
153 |
cttaaaaaactaataaaatatattcattctaatcaaagtgtttaattatccaatttcttcaga |
215 |
Q |
| |
|
|||||||| ||||||||||| ||||||| ||||||||||| ||| |||||||||||||||| |
|
|
| T |
55738 |
cttaaaaatctaataaaatacattcattataatcaaagtgatta---atccaatttcttcaga |
55679 |
T |
|
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