View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9811_low_4 (Length: 311)

Name: NF9811_low_4
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9811_low_4
NF9811_low_4
[»] chr6 (24 HSPs)
chr6 (109-296)||(5692048-5692235)
chr6 (109-295)||(5133842-5134028)
chr6 (147-295)||(5104847-5104995)
chr6 (150-295)||(5368339-5368484)
chr6 (150-295)||(5075709-5075854)
chr6 (150-295)||(5423632-5423777)
chr6 (148-276)||(5183928-5184056)
chr6 (150-281)||(5356594-5356725)
chr6 (207-295)||(5069106-5069194)
chr6 (207-295)||(5348290-5348378)
chr6 (122-280)||(5394937-5395095)
chr6 (214-295)||(5286165-5286246)
chr6 (203-280)||(5341588-5341665)
chr6 (148-296)||(5148938-5149086)
chr6 (215-295)||(5444962-5445042)
chr6 (11-58)||(17289607-17289654)
chr6 (214-280)||(5262185-5262251)
chr6 (207-296)||(5159536-5159625)
chr6 (207-295)||(5093920-5094008)
chr6 (203-295)||(5431286-5431378)
chr6 (11-58)||(19478883-19478931)
chr6 (14-55)||(17280865-17280906)
chr6 (132-253)||(5174787-5174908)
chr6 (11-58)||(10485842-10485890)
[»] chr4 (11 HSPs)
chr4 (123-296)||(4330367-4330540)
chr4 (108-296)||(25567881-25568067)
chr4 (148-295)||(4126413-4126560)
chr4 (123-295)||(4342821-4342993)
chr4 (203-295)||(4358289-4358381)
chr4 (122-285)||(4351120-4351283)
chr4 (208-295)||(4323138-4323225)
chr4 (148-295)||(4333431-4333578)
chr4 (11-58)||(24490835-24490882)
chr4 (11-59)||(10119805-10119854)
chr4 (21-58)||(653745-653782)
[»] chr2 (3 HSPs)
chr2 (146-296)||(22586289-22586439)
chr2 (11-58)||(42915308-42915356)
chr2 (11-58)||(5089824-5089872)
[»] chr1 (8 HSPs)
chr1 (11-59)||(39746673-39746722)
chr1 (11-58)||(31289500-31289547)
chr1 (11-58)||(5602170-5602218)
chr1 (11-58)||(13891550-13891598)
chr1 (11-58)||(14582493-14582541)
chr1 (11-58)||(26650428-26650476)
chr1 (11-58)||(38734871-38734919)
chr1 (24-60)||(10106801-10106837)
[»] scaffold0132 (2 HSPs)
scaffold0132 (11-58)||(2421-2469)
scaffold0132 (11-58)||(10381-10429)
[»] chr7 (7 HSPs)
chr7 (11-58)||(9974014-9974062)
chr7 (11-58)||(10437408-10437456)
chr7 (11-58)||(10451118-10451166)
chr7 (148-227)||(36215868-36215947)
chr7 (12-58)||(24529136-24529183)
chr7 (20-58)||(33227075-33227113)
chr7 (11-58)||(7358079-7358127)
[»] scaffold0011 (2 HSPs)
scaffold0011 (11-58)||(2372-2420)
scaffold0011 (11-58)||(7626-7674)
[»] chr8 (6 HSPs)
chr8 (11-58)||(19430778-19430826)
chr8 (11-58)||(19436220-19436268)
chr8 (11-58)||(19566927-19566975)
chr8 (11-58)||(19572369-19572417)
chr8 (20-58)||(13584930-13584968)
chr8 (11-59)||(31031301-31031350)
[»] chr3 (4 HSPs)
chr3 (11-58)||(13022794-13022842)
chr3 (11-58)||(53120266-53120314)
chr3 (12-58)||(33088616-33088663)
chr3 (18-58)||(3448719-3448759)
[»] chr5 (1 HSPs)
chr5 (21-58)||(13581981-13582018)


Alignment Details
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 296
Target Start/End: Original strand, 5692048 - 5692235
Alignment:
Q  109 tattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctc 208  Q
    ||||||||||| | |||||||| ||||| ||||||| | ||||||||||||||||  | |||| ||| |  |||||| | ||||||| || |||||||      
T  5692048 tattttttcctgcatcaatgttttgtatattggtcgttgtttctttgcaaatatcggagagaagttgttgctgtaaagatacttgtccaacattttgcat 5692147  T
Q  209 ccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggttttg 296  Q
    |||||||||||| |||||||| | ||||||| | || ||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  5692148 ccaaacttcccttatatttgcaaggaagctccttccttcaaaattgcggccaattttattgtaaatggcttttgcaatggtggttttg 5692235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 109 - 295
Target Start/End: Original strand, 5133842 - 5134028
Alignment:
Q  109 tattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctc 208  Q
    |||||||||||  ||||||||| |||||||| || |  |||||||||   |||||| | |||| ||| |||||||| | |||||| | || |||| ||||    
T  5133842 tattttttcctgactcaatgttttgtatcttagttgtcatttctttgttgatatcaaacagaagttgttcttgtaattccacttgaccaaaatttcgctc 5133941  T
Q  209 ccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||||||||||||||||| | ||||||| |||| ||||||| | ||||||||||||||||||||||||| ||||| || |||||    
T  5133942 ccaaacttccctaatatttgcaaggaagctcctaccttcaaaatcgcggccaattttattgtaaatggctttcgcaatggttgtttt 5134028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 147 - 295
Target Start/End: Original strand, 5104847 - 5104995
Alignment:
Q  147 atttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccat 246  Q
    ||||||||||| |||||| | |||| ||  |||||||||| |||  | | || |||||||||||||||||||||||||||||| | ||||||  ||||||    
T  5104847 atttctttgcagatatcaaagagaagtttttcttgtaaattcacccggccaacattttgctcccaaacttccctaatatttgcaaggaagcttctaccat 5104946  T
Q  247 caaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||| |||||||||||||||||||| ||||| ||||| || |||||    
T  5104947 caaaattatggccaattttattgtaaatagctttggcaatggttgtttt 5104995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 150 - 295
Target Start/End: Complemental strand, 5368484 - 5368339
Alignment:
Q  150 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 249  Q
    |||||||| |||||| | |||| ||| |||||||||| ||||| || |  ||||| |||||||||||||||||||||||| | ||||||  |||| ||||    
T  5368484 tctttgcagatatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaa 5368385  T
Q  250 aattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||| ||||||||||||||||||| ||||| ||||| || |||||    
T  5368384 aattgcggccaattttattgtaaatagctttggcaatggttgtttt 5368339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 295
Target Start/End: Original strand, 5075709 - 5075854
Alignment:
Q  150 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 249  Q
    ||||||||||||||| | |||| ||| ||||||||| | ||  ||| |  ||||||||||||||||||||| |||||||| | ||||||| ||||  |||    
T  5075709 tctttgcaaatatcaaaaagaagttgttcttgtaaacaaaccggtccatcattttgctcccaaacttccctgatatttgcaaggaagctcctacctgcaa 5075808  T
Q  250 aattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    | ||  | ||||||||||||||||||||||||||||| ||||||||    
T  5075809 atttacgaccaattttattgtaaatggcttttgcaatggtggtttt 5075854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 150 - 295
Target Start/End: Complemental strand, 5423777 - 5423632
Alignment:
Q  150 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 249  Q
    |||||||| |||||| | |||| ||| |||||||||| ||||| || |  ||||| |||||||||||||||||||||||| | ||||||  |||| ||||    
T  5423777 tctttgcatatatcaaagagaagttgttcttgtaaattcacttttccagcattttcctcccaaacttccctaatatttgcaaggaagcttctaccttcaa 5423678  T
Q  250 aattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||| | ||||||||||||||||| ||||| ||||| || |||||    
T  5423677 aattgcgaccaattttattgtaaatagctttggcaatggttgtttt 5423632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 148 - 276
Target Start/End: Original strand, 5183928 - 5184056
Alignment:
Q  148 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 247  Q
    |||| ||||| |||||| | |||||||| | ||||||||| | | ||| || |||||||||||||||||||||||||||||| | ||||||| |||| ||    
T  5183928 tttcattgcatatatcaaagagaatttgtttttgtaaatatattggtccaacattttgctcccaaacttccctaatatttgcaaggaagctcctaccctc 5184027  T
Q  248 aaaattgtggccaattttattgtaaatgg 276  Q
    ||||||| | ||||||| |||||||||||    
T  5184028 aaaattgcgaccaatttcattgtaaatgg 5184056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 150 - 281
Target Start/End: Original strand, 5356594 - 5356725
Alignment:
Q  150 tctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaa 249  Q
    |||||||| |||||| | |||| ||| |||||||||| |||||| | |   |||| |||||||||||||||||||||||| | ||||||  |||||||||    
T  5356594 tctttgcagatatcagagagaagttgttcttgtaaattcacttggccagctttttcctcccaaacttccctaatatttgcaaggaagcttctaccatcaa 5356693  T
Q  250 aattgtggccaattttattgtaaatggctttt 281  Q
    ||| | ||||||||||||||||||| ||||||    
T  5356694 aatcgcggccaattttattgtaaatagctttt 5356725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 295
Target Start/End: Original strand, 5069106 - 5069194
Alignment:
Q  207 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||||||||||||||||||| | ||||||  |||| ||||||||| ||||||||||||||||||| ||||| ||||| || |||||    
T  5069106 tcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgtttt 5069194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 5348378 - 5348290
Alignment:
Q  207 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||||||||||||||||||| | ||||||  |||| ||||||||| ||||||||||||||||||| ||||| ||||| || |||||    
T  5348378 tcccaaacttccctaatatttgcaaggaagcttctaccttcaaaattgcggccaattttattgtaaatagctttggcaatggtcgtttt 5348290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 280
Target Start/End: Complemental strand, 5395095 - 5394937
Alignment:
Q  122 ctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttcccta 221  Q
    ||||||||| |||||||| |||    ||||||||||||||||| | |||| ||| | |||||| |  ||  ||| || |||||||||||| |||||||||    
T  5395095 ctcaatgttttgtatcttagtcttcgtttctttgcaaatatcaaagagaagttgtttttgtaagtcaaccggtccaacattttgctcccacacttcccta 5394996  T
Q  222 atatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttt 280  Q
    |||||||| | ||||||| |||| ||||||||| | |||||| | ||||| ||||||||    
T  5394995 atatttgcaaggaagctcctaccctcaaaattgcgaccaattctgttgtatatggcttt 5394937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 214 - 295
Target Start/End: Original strand, 5286165 - 5286246
Alignment:
Q  214 cttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||| |||||||| | ||||||| |||||||||||||| ||||||| ||||||||||||||||||| ||| || |||||    
T  5286165 cttcccttatatttgcaaggaagctcctaccatcaaaattgcggccaatcttattgtaaatggcttttgtaatggttgtttt 5286246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 203 - 280
Target Start/End: Complemental strand, 5341665 - 5341588
Alignment:
Q  203 ttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttt 280  Q
    ||||||||||||||||||||||||||| | ||| ||| |||| ||||| |||||||||| |||||| |||||||||||    
T  5341665 ttgctcccaaacttccctaatatttgcaaggaaactcctaccttcaaagttgtggccaagtttattataaatggcttt 5341588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 148 - 296
Target Start/End: Original strand, 5148938 - 5149086
Alignment:
Q  148 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 247  Q
    |||| |||||||||||| | |||| ||| | ||||||| |||| |||| |  ||||| | ||||||| |||||||||||| | |  || ||| |||| ||    
T  5148938 tttccttgcaaatatcaaagagaagttgttgttgtaaagacacatgtccatcatttttcgcccaaacctccctaatatttcctagaaaactcctaccttc 5149037  T
Q  248 aaaattgtggccaattttattgtaaatggcttttgcaatagtggttttg 296  Q
     |||||| |||||||||||||||| |||||||||||||| |||| ||||    
T  5149038 gaaattgcggccaattttattgtagatggcttttgcaatggtggatttg 5149086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 215 - 295
Target Start/End: Complemental strand, 5445042 - 5444962
Alignment:
Q  215 ttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||||||||||||| ||||||| | || ||||||||| ||||| | ||||||||||||||||||||||| || |||||    
T  5445042 ttccctaatatttgcgaggaagctcctgccttcaaaattgcggccagtcttattgtaaatggcttttgcaattgttgtttt 5444962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 17289654 - 17289607
Alignment:
Q  11 gtgtttttctatccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||    
T  17289654 gtgtttttctatccaattttctcactagattcaactagtgttccaaca 17289607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 280
Target Start/End: Original strand, 5262185 - 5262251
Alignment:
Q  214 cttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttt 280  Q
    ||||||| |||||||| | ||||||| | |||||||||||| ||||||| |||||||||||||||||    
T  5262185 cttcccttatatttgcaaggaagctccttccatcaaaattgcggccaatcttattgtaaatggcttt 5262251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 207 - 296
Target Start/End: Original strand, 5159536 - 5159625
Alignment:
Q  207 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggttttg 296  Q
    |||||||||||||||| |||||| | ||||||| |||| ||||||||  ||||||||| ||| || || ||||||||||| || ||||||    
T  5159536 tcccaaacttccctaacatttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgttttg 5159625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 207 - 295
Target Start/End: Complemental strand, 5094008 - 5093920
Alignment:
Q  207 tcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    |||||||||||||||| |||||| | ||||||| |||| ||||||||  ||||||||| ||| || || ||||||||||| || |||||    
T  5094008 tcccaaacttccctaacatttgcaaggaagctcctaccttcaaaattacggccaatttcattatagatagcttttgcaatggttgtttt 5093920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 5431378 - 5431286
Alignment:
Q  203 ttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    |||||||||||||||||||| |||||| | ||| ||| | || ||||| ||| |||| |||| ||| ||||| |||||||||||||| |||||    
T  5431378 ttgctcccaaacttccctaacatttgcaaggaaactcctcccttcaaacttgcggccgatttcattataaattgcttttgcaatagttgtttt 5431286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 19478883 - 19478931
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  19478883 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 19478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 55
Target Start/End: Complemental strand, 17280906 - 17280865
Alignment:
Q  14 tttttctatccaattttctcactagattcaagtagtgttcca 55  Q
    ||||||||||||||||||||||||||||||| || |||||||    
T  17280906 tttttctatccaattttctcactagattcaactaatgttcca 17280865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 253
Target Start/End: Complemental strand, 5174908 - 5174787
Alignment:
Q  132 tgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcga 231  Q
    ||||||||||||||  || ||||  | |||||| |||||| ||| | |||||||| |||||||| |  |  |||| ||||||||||||||||||| |  |    
T  5174908 tgtatcttggtcgacgttcctttaaagatatcagatagaagttgttgttgtaaatccacttgtccagcaggttgcccccaaacttccctaatattgggaa 5174809  T
Q  232 cgaagctcttaccatcaaaatt 253  Q
     ||||||| |||| ||||||||    
T  5174808 tgaagctcctaccttcaaaatt 5174787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 10485842 - 10485890
Alignment:
Q  11 gtgtttttctatccaa-ttttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||||||||| ||||||||||||||| || |||| ||||||||    
T  10485842 gtgtttttctatccaatttttctcactagatttaactagtattccaaca 10485890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 123 - 296
Target Start/End: Complemental strand, 4330540 - 4330367
Alignment:
Q  123 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaa 222  Q
    |||||||| ||||||||||| |  ||||||||| |||||||| | | || ||| ||||||||||| ||||||| |  |  |||||||||||| |||||||    
T  4330540 tcaatgttttgtatcttggttgtgatttctttgaaaatatcatacataagttgttcttgtaaatagacttgtctagaaacttgctcccaaacctccctaa 4330441  T
Q  223 tatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggttttg 296  Q
    ||||||| |  |||||| |||| ||||||||| ||||||||||||| |||||||| |||||||| ||| |||||    
T  4330440 tatttgcaagaaagctcctaccttcaaaattgcggccaattttattataaatggcctttgcaatggtgattttg 4330367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 108 - 296
Target Start/End: Complemental strand, 25568067 - 25567881
Alignment:
Q  108 ttattttttccttcctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgct 207  Q
    |||||||||||||||||||| || || ||||||||||   |||||||||||| |||| | ||||| || ||||||||  |||| || | || |||||| |    
T  25568067 ttattttttccttcctcaatattttgaatcttggtcgtcgtttctttgcaaacatcaaagagaatctgttcttgtaacgacacctgaccaacattttgtt 25567968  T
Q  208 cccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggttttg 296  Q
    |||| ||||| ||||||||||| |  |||||| |||  ||| |||  |||||||||||||||||||||||||||||||| |||||||||    
T  25567967 cccagacttctctaatatttgccaaaaagctcctacattcataat--tggccaattttattgtaaatggcttttgcaatggtggttttg 25567881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 148 - 295
Target Start/End: Original strand, 4126413 - 4126560
Alignment:
Q  148 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 247  Q
    |||||||| |||||||| | | || ||| ||||||||||||||||||| |  |  |||||||||||| ||||| |||||||| |  |||||| |||| ||    
T  4126413 tttctttgaaaatatcatacataagttgttcttgtaaatacacttgtccagaaacttgctcccaaacctcccttatatttgcaagaaagctcctaccttc 4126512  T
Q  248 aaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||  ||||||||||||||||||||||||||||||| ||||||||    
T  4126513 aaaattccggccaattttattgtaaatggcttttgcaatggtggtttt 4126560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 123 - 295
Target Start/End: Complemental strand, 4342993 - 4342821
Alignment:
Q  123 tcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaa 222  Q
    |||||||| ||||||||||| | | |||||||| ||||||||   | || ||| |||||||||||||||||||    |  |||||||||||| |||||||    
T  4342993 tcaatgttttgtatcttggtagttgtttctttgaaaatatcatgcataagttgttcttgtaaatacacttgtcctgaaacttgctcccaaacctccctaa 4342894  T
Q  223 tatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||| |  |||||| |  | ||||||||| | ||||||||||||||||||||||||||||| ||||||||    
T  4342893 tatttgcaagaaagctcctggcttcaaaattgcgaccaattttattgtaaatggcttttgcaatggtggtttt 4342821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 203 - 295
Target Start/End: Complemental strand, 4358381 - 4358289
Alignment:
Q  203 ttgctcccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    |||||||||||| |||||||||||| | |  |||||| |||| ||||||||| | ||||||||||||||||||| ||||||||| ||||||||    
T  4358381 ttgctcccaaacctccctaatattttcaagaaagctcctaccttcaaaattgcgaccaattttattgtaaatggattttgcaatggtggtttt 4358289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 285
Target Start/End: Complemental strand, 4351283 - 4351120
Alignment:
Q  122 ctcaatgttatgtatcttggtcgatatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttcccta 221  Q
    ||||||||| |||||||| || | | |||||||| ||||||||  || || ||| | |||||||| |  ||||| |  |  |||||||| ||| ||||||    
T  4351283 ctcaatgttttgtatctttgttgttgtttctttgaaaatatcatctataagttgtttttgtaaatgctgttgtccagaaacttgctccccaacctcccta 4351184  T
Q  222 atatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaa 285  Q
    |||||||| |  || ||| |||| ||||||||| ||||||||||||||||||||||||||||||    
T  4351183 atatttgcaagaaaactcctaccttcaaaattgcggccaattttattgtaaatggcttttgcaa 4351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 208 - 295
Target Start/End: Original strand, 4323138 - 4323225
Alignment:
Q  208 cccaaacttccctaatatttgcgacgaagctcttaccatcaaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||||||| |||||||||||||| |  |||||| |||| ||||||||| | |||||||||||||||||||| |||||||  ||||||||    
T  4323138 cccaaacctccctaatatttgcaataaagctcctaccttcaaaattgcgaccaattttattgtaaatggcctttgcaacggtggtttt 4323225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 148 - 295
Target Start/End: Complemental strand, 4333578 - 4333431
Alignment:
Q  148 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttaccatc 247  Q
    |||||||| |||||||| | | || ||| ||||||| || |||||| | |  || || ||||||||| |||||||||||||| |  |||||| |||| |     
T  4333578 tttctttgaaaatatcatacataagttgttcttgtagattcacttgaccataatctttctcccaaacctccctaatatttgcaagaaagctcctaccttg 4333479  T
Q  248 aaaattgtggccaattttattgtaaatggcttttgcaatagtggtttt 295  Q
    ||| ||| |||||||||||||||||||||| || ||||| ||||||||    
T  4333478 aaatttgcggccaattttattgtaaatggccttcgcaattgtggtttt 4333431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 24490835 - 24490882
Alignment:
Q  11 gtgtttttctatccaattttctcactagattcaagtagtgttccaaca 58  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||    
T  24490835 gtgtttttctatccaattttctcactagatttaactagtgttccaaca 24490882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 10119854 - 10119805
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaacat 59  Q
    |||||||||| ||||||||||||||| |||||||| ||||||||||||||    
T  10119854 gtgtttttcttatccaattttctcacgagattcaactagtgttccaacat 10119805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Original strand, 653745 - 653782
Alignment:
Q  21 atccaattttctcactagattcaagtagtgttccaaca 58  Q
    ||||||||||||||||||||| || |||||||||||||    
T  653745 atccaattttctcactagattaaactagtgttccaaca 653782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 146 - 296
Target Start/End: Original strand, 22586289 - 22586439
Alignment:
Q  146 tatttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatatttgcgacgaagctcttacca 245  Q
    ||||||||| || |||||| ||| || ||| |||||||||  || ||||| |  || ||||| ||||||||||||||||||||| | ||||||| ||||     
T  22586289 tatttctttacagatatcagataaaagttgttcttgtaaaaccatttgtctaccatcttgcttccaaacttccctaatatttgcaaggaagctcctacct 22586388  T
Q  246 tcaaaattgtggccaattttattgtaaatggcttttgcaatagtggttttg 296  Q
    ||||| | | ||||||| ||||||||||  ||||||||||| || ||||||    
T  22586389 tcaaactcgcggccaatcttattgtaaacagcttttgcaatggttgttttg 22586439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 42915308 - 42915356
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  42915308 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 42915356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 5089824 - 5089872
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||| |||||| ||||||| |||||    
T  5089824 gtgtttttcttatccaattttctcactaaattcaactagtgtttcaaca 5089872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 39746722 - 39746673
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaacat 59  Q
    |||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  39746722 gtgtttttcttatccaattttctcactagattcaactagtgttccaacat 39746673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 31289500 - 31289547
Alignment:
Q  11 gtgtttttctatccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||  ||||||||||||||||||||||||| |||||||||||||    
T  31289500 gtgttttcttatccaattttctcactagattcaactagtgttccaaca 31289547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 5602218 - 5602170
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||| |||||| |||||||||||||    
T  5602218 gtgtttttcttatccaattttctcactaaattcaactagtgttccaaca 5602170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 13891550 - 13891598
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  13891550 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 13891598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 14582493 - 14582541
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  14582493 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 14582541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 26650476 - 26650428
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  26650476 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 26650428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 38734871 - 38734919
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  38734871 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 38734919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 10106801 - 10106837
Alignment:
Q  24 caattttctcactagattcaagtagtgttccaacata 60  Q
    |||||||||||||||||| || |||||||||||||||    
T  10106801 caattttctcactagattgaactagtgttccaacata 10106837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: scaffold0132
Description:

Target: scaffold0132; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 2469 - 2421
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  2469 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 2421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0132; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Complemental strand, 10429 - 10381
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10429 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 9974014 - 9974062
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  9974014 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 9974062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 10437408 - 10437456
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10437408 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10437456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 10451118 - 10451166
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||    
T  10451118 gtgtttttcttatccaattttctcactagattcaactagtgttccaaca 10451166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 227
Target Start/End: Original strand, 36215868 - 36215947
Alignment:
Q  148 tttctttgcaaatatcacatagaatttgctcttgtaaatacacttgtcgaatattttgctcccaaacttccctaatattt 227  Q
    ||||||||||||||||| | |||| ||| | ||||||| ||||||||| || ||||| ||||||||| |||||| |||||    
T  36215868 tttctttgcaaatatcaaagagaagttgttgttgtaaagacacttgtccaacatttttctcccaaacctccctagtattt 36215947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 24529136 - 24529183
Alignment:
Q  12 tgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    ||||||||| ||||||||||||||||||||| || |||||||||||||    
T  24529136 tgtttttcttatccaattttctcactagatttaactagtgttccaaca 24529183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 33227075 - 33227113
Alignment:
Q  20 tatccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||||||||||||||| || |||||||||||||    
T  33227075 tatccaattttctcactagatttaactagtgttccaaca 33227113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 7358079 - 7358127
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||  |||||||| |||||||||||||    
T  7358079 gtgtttttcttatccaattttctcaaaagattcaactagtgttccaaca 7358127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 2372 - 2420
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  2372 gtgtttttcttatccaattttctcactaggttcaactagtgttccaaca 2420  T

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Target: scaffold0011; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 7626 - 7674
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| |||||||||||||||||| ||||| |||||||||||||    
T  7626 gtgtttttcttatccaattttctcactaggttcaactagtgttccaaca 7674  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 19430778 - 19430826
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19430778 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19430826  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 19436220 - 19436268
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19436220 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19436268  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 19566927 - 19566975
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19566927 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19566975  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 19572369 - 19572417
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  19572369 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 19572417  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 58
Target Start/End: Original strand, 13584930 - 13584968
Alignment:
Q  20 tatccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||||||||||||||| || |||||||||||||    
T  13584930 tatccaattttctcactagatttaactagtgttccaaca 13584968  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 31031301 - 31031350
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaacat 59  Q
    |||||||||| |||||||||||||| |||||| || ||||||||||||||    
T  31031301 gtgtttttcttatccaattttctcattagatttaactagtgttccaacat 31031350  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 13022794 - 13022842
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  13022794 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 13022842  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 58
Target Start/End: Original strand, 53120266 - 53120314
Alignment:
Q  11 gtgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||| ||||||||||||||||||||| || |||||||||||||    
T  53120266 gtgtttttcttatccaattttctcactagatttaactagtgttccaaca 53120314  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 33088663 - 33088616
Alignment:
Q  12 tgtttttct-atccaattttctcactagattcaagtagtgttccaaca 58  Q
    ||||||||| ||||||||||||||||||||| || |||||||||||||    
T  33088663 tgtttttcttatccaattttctcactagatttaactagtgttccaaca 33088616  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 3448719 - 3448759
Alignment:
Q  18 tctatccaattttctcactagattcaagtagtgttccaaca 58  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  3448719 tctatccaattttctcactagatttaactagtgttcaaaca 3448759  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 58
Target Start/End: Complemental strand, 13582018 - 13581981
Alignment:
Q  21 atccaattttctcactagattcaagtagtgttccaaca 58  Q
    ||||||||||||||||||||| || |||||||||||||    
T  13582018 atccaattttctcactagattgaactagtgttccaaca 13581981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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