View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9811_low_5 (Length: 287)
Name: NF9811_low_5
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9811_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 2443504 - 2443774
Alignment:
| Q |
1 |
cctgcaaatcaccaaaagctcggaatgccaaatcaaccatgcacctttcaaattttcttttcattaacctcaaccgaccaacaagaaaagtgcacaaata |
100 |
Q |
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| T |
2443504 |
cctgcaaatcaccaaaagcttggaatgccaaatcaaccacgcacctttcagattttcttctcattaacctcaaccgaccaacaagaaaagtgcacaaata |
2443603 |
T |
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| Q |
101 |
aattcagggagtaacaaaactaaaatccatccatctcaaaacgttttgacacaccatatcttccattttgccacacaacagacagtttaagaatgcgttg |
200 |
Q |
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| T |
2443604 |
aattcggggagtaacaaaattaaaatccatccatctcaaaacgttttgaaacaccatatcttccattttgccacacaacagacaatttaagaatgcgttg |
2443703 |
T |
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| Q |
201 |
tgatccaaaacgtttccaaatgcaagatttgaacacgttggaatatagtcttgaagaagagtccaagaaaa |
271 |
Q |
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| T |
2443704 |
tgatccaaaacgtttccaaatgcaagatttgaacacgttggaatacagtctagaagaagagtccaagaaaa |
2443774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 12220501 - 12220573
Alignment:
| Q |
199 |
tgtgatccaaaacgtttccaaatgcaagatttgaacacgttggaatatagtcttgaagaagagtccaagaaaa |
271 |
Q |
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|||||||||||||||||||||||||||||||| | | |||||||| || ||| ||||||||||||||||||| |
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| T |
12220501 |
tgtgatccaaaacgtttccaaatgcaagatttaaccgagttggaatttaatctagaagaagagtccaagaaaa |
12220573 |
T |
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