View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9811_low_7 (Length: 271)
Name: NF9811_low_7
Description: NF9811
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9811_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 139 - 253
Target Start/End: Original strand, 22102891 - 22103005
Alignment:
| Q |
139 |
aaatttataatatactctttgatcgttcaattcgagtaagaaattcatttgtatgtactcaacttattgttagtttataatttaaacctcttgaacctaa |
238 |
Q |
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| T |
22102891 |
aaattcataatatactctttgatcgttcaattcgagtaagaaattcatttgtatgtactcaacttattgttagtttataatttaaacctcttgaacctaa |
22102990 |
T |
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| Q |
239 |
atacaacgattgcac |
253 |
Q |
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| T |
22102991 |
atacaacgattgcac |
22103005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 13 - 102
Target Start/End: Original strand, 22102808 - 22102897
Alignment:
| Q |
13 |
gttacatacaactttgaaatgggtgcccgatctctcgacaatgtagatttcgctcttgattctaaaagaattgttgattgtgcaaattca |
102 |
Q |
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| T |
22102808 |
gttacgtacaactttggaatgggtgccaaatctctcgacaatgtagatttcactcttgattctaaaagaattgttgattgtgcaaattca |
22102897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 37836676 - 37836561
Alignment:
| Q |
13 |
gttacatacaactttgaaatgggtgcccgatctc----tcgacaatgtagatttcgctcttgattctaaaagaattgttgattgtgcaaattcacatata |
108 |
Q |
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| T |
37836676 |
gttacatacaactttggaatgagtgtcggatctcgagttctacaatgtggatttcgctcttgattctaaaagagttgttgattgtataaattcacatata |
37836577 |
T |
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| Q |
109 |
gatgatagtatcgagt |
124 |
Q |
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| T |
37836576 |
gatgatagtagcgagt |
37836561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 47 - 118
Target Start/End: Complemental strand, 10325294 - 10325223
Alignment:
| Q |
47 |
tcgacaatgtagatttcgctcttgattctaaaagaattgttgattgtgcaaattcacatatagatgatagta |
118 |
Q |
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| T |
10325294 |
tcgacaatgtcgattttgctcttgattctaaaagggttgttgattatgtaaattcagatatagatgatagta |
10325223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Original strand, 12980617 - 12980692
Alignment:
| Q |
49 |
gacaatgtagatttcgctcttgattctaaaagaattgttgattgtgcaaattcacatatagatgatagtatcgagt |
124 |
Q |
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| T |
12980617 |
gacagtgtggatttcgctcttgattccaaaaaagttgttgattgtataaattcacatataaatgatagtagcgagt |
12980692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 124
Target Start/End: Complemental strand, 10395581 - 10395509
Alignment:
| Q |
52 |
aatgtagatttcgctcttgattctaaaagaattgttgattgtgcaaattcacatatagatgatagtatcgagt |
124 |
Q |
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| T |
10395581 |
aatgtagattttgttcttgattgtaaaagggttgttgattgtgtcaattcaagtttagatgatagtagcgagt |
10395509 |
T |
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