View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9812_high_1 (Length: 929)
Name: NF9812_high_1
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_high_1 |
 | |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 46283113 - 46283571
Alignment:
| Q |
19 |
atgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagct |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283113 |
atgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagct |
46283212 |
T |
|
| Q |
119 |
tagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaattgtttcttcgattgaacagaaggaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46283213 |
tagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttcttcgattgaacagaaggaa |
46283312 |
T |
|
| Q |
219 |
gaaggtagaaagaatgaagatcatgttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283313 |
gaaggtagaaagaatgaagatcatgttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgt |
46283412 |
T |
|
| Q |
319 |
tggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagat |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283413 |
tggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagat |
46283512 |
T |
|
| Q |
419 |
tggtgatgacaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
477 |
Q |
| |
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||||||||| ||||||||||||| |||||||| ||| ||||||||||| |||||||||| |
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| T |
46283513 |
tggtgatgagaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
46283571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 570 - 929
Target Start/End: Complemental strand, 3897297 - 3896938
Alignment:
| Q |
570 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
669 |
Q |
| |
|
|||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897297 |
gttgtgattgtttgaaggatattgctgcggcagatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
3897198 |
T |
|
| Q |
670 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
3897197 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
3897098 |
T |
|
| Q |
770 |
atgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaa |
869 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
3897097 |
atgaagttatactaatagttgtgttcttccattaatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaa |
3896998 |
T |
|
| Q |
870 |
taatattgcatgtaattatatgtgtcggtgaatgaacaaaggcctattcttatcaaatgc |
929 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
3896997 |
taatattgcatgtaattatatgtgtcggtgaatgaacaaagacctattcttatcaaatgc |
3896938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 30 - 477
Target Start/End: Complemental strand, 3899154 - 3898713
Alignment:
| Q |
30 |
gcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagcttagcgtcgaag |
129 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| ||||||| | |||||||||||| | |||| |
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|
| T |
3899154 |
gcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagcttagcttggaag |
3899055 |
T |
|
| Q |
130 |
agaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaattgtttcttcgattgaacagaaggaagaaggtagaaa |
229 |
Q |
| |
|
||| |||||| |||| |||||||||||||||| || || | | || ||||| |||| |||||| |||| ||| | |||||||||||||||| |
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|
| T |
3899054 |
agatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttc-------gaa--ggaggaagaaggtagaaa |
3898964 |
T |
|
| Q |
230 |
gaatgaagatcatg---ttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgttggattcg |
326 |
Q |
| |
|
|||||||||| || |||||| ||| ||| | |||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
3898963 |
gaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatccgagttggagaatgtttgtggtagtattctggagttgctggattcg |
3898864 |
T |
|
| Q |
327 |
aatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagattggtgatg |
426 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| | || |||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
3898863 |
aaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgagtttaagattggtgatg |
3898764 |
T |
|
| Q |
427 |
acaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
477 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
3898763 |
acaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
3898713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 584 - 733
Target Start/End: Original strand, 46283646 - 46283795
Alignment:
| Q |
584 |
aaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttg |
683 |
Q |
| |
|
|||||||||||| | |||||||||| ||| |||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||| || | | || |
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|
| T |
46283646 |
aaggatattgctgctgcggatcttccatcaactcatcctataagattgggtttggctctcaatttctctgttttctattacgaaattctcaatcaatctg |
46283745 |
T |
|
| Q |
684 |
acgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgttt |
733 |
Q |
| |
|
|| ||| | ||||||||| | ||||||||||||||||| ||||||||| |
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|
| T |
46283746 |
acaaagcttgtgacatggccaaacaggtttgtgttaatctgatcttgttt |
46283795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 570 - 929
Target Start/End: Complemental strand, 4953 - 4592
Alignment:
| Q |
570 |
gttgtgattgtttgaaggatattgctacggcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
669 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4953 |
gttgtgattgtttgaaggatattgctgctgcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaat |
4854 |
T |
|
| Q |
670 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
769 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4853 |
tcttaaccggtttgacgaaggtcttgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcact |
4754 |
T |
|
| Q |
770 |
atgaagttatactaatagttgtgttcttcctttaatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaa |
869 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
4753 |
atgaagttatactaatagttgtgttcttccattaatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaa |
4654 |
T |
|
| Q |
870 |
taatatt--gcatgtaattatatgtgtcggtgaatgaacaaaggcctattcttatcaaatgc |
929 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
4653 |
taatattaagcatgtaattatatgtgtaggtgaatgaacaaaggcctattcttatcaaatgc |
4592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 477
Target Start/End: Complemental strand, 5485 - 5044
Alignment:
| Q |
30 |
gcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagcttagcgtcgaag |
129 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| ||||||| | |||||||||||| | |||| |
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|
| T |
5485 |
gcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagcttagcttggaag |
5386 |
T |
|
| Q |
130 |
agaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaattgtttcttcgattgaacagaaggaagaaggtagaaa |
229 |
Q |
| |
|
||| |||||| |||| |||||||||||||||| || || | | || ||||| |||| |||||| |||| | || |||||||||||||||| |
|
|
| T |
5385 |
agatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttc---------aaaggaggaagaaggtagaaa |
5295 |
T |
|
| Q |
230 |
gaatgaagatcatg---ttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgttggattcg |
326 |
Q |
| |
|
|||||||||| || |||||| ||| ||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
5294 |
gaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatcagagttggagaatgtttgtggtagtattctggagttgctggattcg |
5195 |
T |
|
| Q |
327 |
aatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagattggtgatg |
426 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| | || |||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
5194 |
aaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgagtttaagattggtgatg |
5095 |
T |
|
| Q |
427 |
acaaaaaatctgctgttgaggatattattttgtcttacaaggctgcacagg |
477 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
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| T |
5094 |
acaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
5044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 27125438 - 27125481
Alignment:
| Q |
374 |
taagatgaaaggtgattatcataggtatttggctgagtttaaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
27125438 |
taagatgaaaggtgattatcataggtatcttgctgagtttaaga |
27125481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 629 - 666
Target Start/End: Complemental strand, 39356450 - 39356413
Alignment:
| Q |
629 |
ttgggtttggctttgaatttctcggttttctattatga |
666 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
39356450 |
ttgggtctggctttgaatttctcagttttctattatga |
39356413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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