View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9812_high_10 (Length: 324)

Name: NF9812_high_10
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9812_high_10
NF9812_high_10
[»] chr3 (35 HSPs)
chr3 (3-316)||(982179-982499)
chr3 (30-103)||(35718406-35718479)
chr3 (4-51)||(17603172-17603219)
chr3 (4-51)||(21727531-21727578)
chr3 (4-51)||(48648207-48648254)
chr3 (5-49)||(265102-265146)
chr3 (4-49)||(264470-264515)
chr3 (4-49)||(14871157-14871202)
chr3 (4-49)||(31974655-31974700)
chr3 (4-49)||(46150733-46150778)
chr3 (4-53)||(51469279-51469328)
chr3 (3-51)||(46149632-46149680)
chr3 (4-48)||(54458670-54458714)
chr3 (6-49)||(981673-981716)
chr3 (12-51)||(17603963-17604002)
chr3 (4-51)||(48649175-48649222)
chr3 (4-51)||(48765072-48765119)
chr3 (4-47)||(55373712-55373755)
chr3 (9-47)||(17605715-17605753)
chr3 (6-48)||(20212986-20213028)
chr3 (3-49)||(31115603-31115649)
chr3 (5-47)||(37987238-37987280)
chr3 (5-47)||(40872814-40872856)
chr3 (10-48)||(48413329-48413367)
chr3 (5-51)||(51827496-51827542)
chr3 (4-49)||(37520565-37520610)
chr3 (4-49)||(37988222-37988267)
chr3 (4-49)||(41458037-41458082)
chr3 (4-49)||(45081407-45081452)
chr3 (4-49)||(48507036-48507081)
chr3 (6-47)||(52282418-52282459)
chr3 (4-48)||(959839-959883)
chr3 (4-48)||(960571-960615)
chr3 (4-48)||(13477061-13477105)
chr3 (4-48)||(20213536-20213580)
[»] chr7 (45 HSPs)
chr7 (3-316)||(24453463-24453776)
chr7 (4-204)||(8375991-8376193)
chr7 (4-194)||(1418170-1418365)
chr7 (5-194)||(38225304-38225496)
chr7 (4-105)||(1417611-1417712)
chr7 (4-105)||(38225923-38226024)
chr7 (4-51)||(13785595-13785642)
chr7 (197-239)||(2533015-2533057)
chr7 (4-49)||(7668485-7668530)
chr7 (4-49)||(14686134-14686179)
chr7 (4-49)||(25342500-25342545)
chr7 (4-49)||(25343306-25343351)
chr7 (4-49)||(25599025-25599070)
chr7 (4-49)||(26636106-26636151)
chr7 (4-49)||(30660596-30660641)
chr7 (4-49)||(30661459-30661504)
chr7 (4-49)||(37949608-37949653)
chr7 (4-49)||(37950471-37950516)
chr7 (5-50)||(43065119-43065164)
chr7 (4-49)||(46428190-46428235)
chr7 (4-47)||(45099899-45099942)
chr7 (4-51)||(47719706-47719753)
chr7 (4-49)||(3772530-3772575)
chr7 (4-49)||(19067640-19067685)
chr7 (4-49)||(24389620-24389665)
chr7 (4-49)||(26636864-26636909)
chr7 (4-49)||(27948449-27948494)
chr7 (4-48)||(3029203-3029247)
chr7 (4-48)||(31278159-31278203)
chr7 (4-51)||(3688387-3688434)
chr7 (4-47)||(3903345-3903388)
chr7 (4-51)||(14305093-14305140)
chr7 (4-47)||(19068401-19068444)
chr7 (4-47)||(24719338-24719381)
chr7 (4-47)||(37395505-37395548)
chr7 (4-49)||(16664129-16664174)
chr7 (4-49)||(17638489-17638534)
chr7 (4-49)||(18977773-18977818)
chr7 (4-49)||(21496987-21497032)
chr7 (4-49)||(25343243-25343288)
chr7 (4-49)||(40273563-40273608)
chr7 (4-49)||(42421054-42421099)
chr7 (4-49)||(45161972-45162017)
chr7 (4-49)||(46428821-46428866)
chr7 (197-237)||(21156501-21156541)
[»] scaffold0085 (2 HSPs)
scaffold0085 (23-316)||(16394-16676)
scaffold0085 (4-47)||(22076-22119)
[»] chr2 (34 HSPs)
chr2 (4-194)||(22301198-22301390)
chr2 (36-204)||(24120535-24120702)
chr2 (4-105)||(22301817-22301918)
chr2 (4-135)||(26752031-26752163)
chr2 (3-105)||(26752670-26752772)
chr2 (4-48)||(12725619-12725663)
chr2 (4-49)||(1297126-1297171)
chr2 (4-49)||(9275590-9275635)
chr2 (4-49)||(29719450-29719495)
chr2 (4-51)||(9540335-9540382)
chr2 (4-51)||(15902883-15902930)
chr2 (4-50)||(29513149-29513195)
chr2 (4-49)||(1296383-1296428)
chr2 (4-49)||(9276333-9276378)
chr2 (4-49)||(11750261-11750306)
chr2 (4-49)||(15774206-15774251)
chr2 (4-49)||(22560571-22560616)
chr2 (11-51)||(16692975-16693015)
chr2 (4-48)||(23857028-23857072)
chr2 (4-48)||(27178649-27178693)
chr2 (5-49)||(29512376-29512420)
chr2 (4-47)||(27177916-27177959)
chr2 (4-47)||(36237635-36237678)
chr2 (4-49)||(15902124-15902169)
chr2 (4-49)||(18174673-18174718)
chr2 (3-48)||(18820435-18820480)
chr2 (4-49)||(29559423-29559468)
chr2 (8-49)||(42182618-42182659)
chr2 (4-48)||(11751073-11751117)
chr2 (4-48)||(18174103-18174147)
chr2 (4-48)||(18821235-18821279)
chr2 (5-49)||(23856640-23856684)
chr2 (4-48)||(34812860-34812904)
chr2 (3-51)||(36238731-36238779)
[»] chr5 (34 HSPs)
chr5 (12-194)||(1553419-1553603)
chr5 (4-105)||(1554030-1554131)
chr5 (4-51)||(7632098-7632145)
chr5 (4-51)||(19128773-19128820)
chr5 (4-49)||(6476794-6476839)
chr5 (4-49)||(29046032-29046077)
chr5 (4-47)||(234704-234747)
chr5 (4-47)||(237826-237869)
chr5 (4-51)||(1281839-1281886)
chr5 (4-51)||(1283501-1283548)
chr5 (4-47)||(19359707-19359750)
chr5 (4-49)||(235595-235640)
chr5 (4-49)||(10554550-10554595)
chr5 (3-48)||(25858212-25858257)
chr5 (4-49)||(27364490-27364535)
chr5 (4-49)||(28705882-28705927)
chr5 (4-49)||(29087928-29087973)
chr5 (4-44)||(1283533-1283573)
chr5 (4-44)||(10554525-10554565)
chr5 (4-48)||(38057599-38057643)
chr5 (4-47)||(14478924-14478967)
chr5 (4-47)||(19360481-19360524)
chr5 (6-49)||(28705170-28705213)
chr5 (4-47)||(38056797-38056840)
chr5 (5-51)||(22798905-22798951)
chr5 (3-49)||(36038697-36038743)
chr5 (4-49)||(236932-236977)
chr5 (4-49)||(4084883-4084928)
chr5 (4-49)||(17071227-17071272)
chr5 (6-51)||(22799761-22799806)
chr5 (4-49)||(34600264-34600309)
chr5 (4-49)||(34709040-34709085)
chr5 (4-48)||(17071798-17071842)
chr5 (5-49)||(20854908-20854952)
[»] chr8 (27 HSPs)
chr8 (4-193)||(27441999-27442189)
chr8 (4-105)||(27441470-27441571)
chr8 (4-105)||(183893-183994)
chr8 (81-194)||(183320-183435)
chr8 (4-71)||(41974644-41974711)
chr8 (4-49)||(38576305-38576350)
chr8 (4-51)||(32414525-32414572)
chr8 (5-51)||(26654379-26654425)
chr8 (4-49)||(3165125-3165170)
chr8 (4-49)||(8996977-8997022)
chr8 (4-48)||(32979828-32979872)
chr8 (4-47)||(8372917-8372960)
chr8 (4-47)||(8373698-8373741)
chr8 (4-51)||(22320378-22320425)
chr8 (4-51)||(31641515-31641562)
chr8 (4-51)||(37732830-37732877)
chr8 (6-48)||(9197101-9197143)
chr8 (4-50)||(11686230-11686276)
chr8 (5-51)||(28929850-28929896)
chr8 (4-51)||(39860114-39860163)
chr8 (4-49)||(31602020-31602065)
chr8 (4-49)||(32413762-32413807)
chr8 (4-49)||(39860877-39860922)
chr8 (4-48)||(9197824-9197868)
chr8 (4-48)||(14825647-14825691)
chr8 (4-48)||(17725658-17725702)
chr8 (4-48)||(26652297-26652341)
[»] scaffold0504 (1 HSPs)
scaffold0504 (4-47)||(5385-5428)
[»] chr4 (44 HSPs)
chr4 (4-51)||(24551925-24551972)
chr4 (4-49)||(47688483-47688528)
chr4 (6-51)||(55976172-55976217)
chr4 (4-47)||(2444376-2444419)
chr4 (4-51)||(8248522-8248569)
chr4 (4-51)||(8266187-8266234)
chr4 (5-48)||(52871303-52871346)
chr4 (4-47)||(53772811-53772854)
chr4 (5-51)||(55001442-55001488)
chr4 (4-49)||(599305-599350)
chr4 (4-49)||(9365173-9365218)
chr4 (4-49)||(16903647-16903692)
chr4 (4-49)||(20774184-20774229)
chr4 (4-49)||(26147036-26147081)
chr4 (4-49)||(30573713-30573758)
chr4 (4-49)||(47785803-47785848)
chr4 (4-49)||(53732439-53732484)
chr4 (4-49)||(53773590-53773635)
chr4 (4-48)||(3654520-3654564)
chr4 (4-48)||(31329722-31329766)
chr4 (4-48)||(42882686-42882730)
chr4 (4-51)||(8247700-8247747)
chr4 (4-51)||(8265365-8265412)
chr4 (4-47)||(19080389-19080432)
chr4 (4-47)||(19550290-19550333)
chr4 (4-51)||(24158822-24158869)
chr4 (4-51)||(55000691-55000738)
chr4 (4-51)||(55976957-55977004)
chr4 (4-42)||(12368666-12368704)
chr4 (4-49)||(2182525-2182570)
chr4 (4-49)||(2446165-2446210)
chr4 (4-49)||(5046486-5046531)
chr4 (4-49)||(7841548-7841593)
chr4 (7-48)||(9365821-9365862)
chr4 (4-49)||(19551052-19551097)
chr4 (4-49)||(24374793-24374838)
chr4 (4-49)||(56262482-56262527)
chr4 (4-44)||(16903677-16903717)
chr4 (4-48)||(26159626-26159670)
chr4 (9-49)||(43146652-43146692)
chr4 (4-48)||(46168142-46168186)
chr4 (4-48)||(47687913-47687957)
chr4 (4-48)||(53147875-53147919)
chr4 (11-47)||(53733737-53733773)
[»] chr1 (42 HSPs)
chr1 (4-51)||(25469088-25469135)
chr1 (4-49)||(4433851-4433896)
chr1 (4-49)||(7558452-7558497)
chr1 (4-49)||(10121556-10121601)
chr1 (4-49)||(34309234-34309279)
chr1 (4-49)||(49680814-49680859)
chr1 (4-48)||(10120786-10120830)
chr1 (4-50)||(47967865-47967911)
chr1 (4-49)||(169631-169676)
chr1 (4-49)||(4439210-4439255)
chr1 (4-49)||(7559203-7559248)
chr1 (4-49)||(13262836-13262881)
chr1 (4-49)||(13263520-13263565)
chr1 (4-49)||(30663361-30663406)
chr1 (4-49)||(30663980-30664025)
chr1 (4-49)||(30932799-30932844)
chr1 (4-49)||(36389778-36389823)
chr1 (6-51)||(43252489-43252533)
chr1 (4-48)||(17172667-17172711)
chr1 (4-48)||(19172580-19172624)
chr1 (4-48)||(24991973-24992017)
chr1 (4-44)||(26118676-26118716)
chr1 (4-52)||(46391867-46391915)
chr1 (4-47)||(17171934-17171977)
chr1 (4-47)||(27256718-27256761)
chr1 (4-51)||(28182074-28182121)
chr1 (4-47)||(34308476-34308519)
chr1 (4-59)||(37853129-37853184)
chr1 (5-47)||(45818025-45818067)
chr1 (4-49)||(168893-168938)
chr1 (4-49)||(7406248-7406293)
chr1 (4-49)||(8987793-8987838)
chr1 (4-49)||(11548803-11548848)
chr1 (4-49)||(11704812-11704857)
chr1 (3-48)||(19171780-19171825)
chr1 (4-49)||(25468513-25468558)
chr1 (4-49)||(28181536-28181581)
chr1 (5-49)||(8988552-8988596)
chr1 (11-51)||(30931898-30931938)
chr1 (4-48)||(36390372-36390416)
chr1 (4-52)||(37577646-37577694)
chr1 (9-49)||(46812191-46812231)
[»] chr6 (14 HSPs)
chr6 (4-49)||(10171279-10171324)
chr6 (4-49)||(19311004-19311049)
chr6 (4-49)||(26529516-26529561)
chr6 (4-51)||(19311828-19311875)
chr6 (4-51)||(33436275-33436322)
chr6 (4-49)||(8488472-8488517)
chr6 (4-49)||(10171969-10172014)
chr6 (8-49)||(19322990-19323031)
chr6 (4-49)||(19323770-19323815)
chr6 (4-49)||(26528826-26528871)
chr6 (4-51)||(33435343-33435390)
chr6 (4-49)||(9441240-9441285)
chr6 (4-48)||(8489284-8489328)
chr6 (4-48)||(18227735-18227778)
[»] scaffold0176 (1 HSPs)
scaffold0176 (4-48)||(26595-26639)
[»] scaffold0096 (1 HSPs)
scaffold0096 (6-47)||(39901-39942)
[»] scaffold2007 (1 HSPs)
scaffold2007 (4-49)||(754-799)
[»] scaffold0093 (1 HSPs)
scaffold0093 (4-49)||(23732-23777)
[»] scaffold1207 (1 HSPs)
scaffold1207 (4-48)||(1590-1634)


Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 982499 - 982179
Alignment:
Q  3 gggatccgttgacaccaggcgtcaac------ggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaatt 96  Q
    ||||||||||||||||||| ||||||      ||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  982499 gggatccgttgacaccaggtgtcaactgacacggatttgttgacaccaaatcttagccatttaatacatttaatccaagggtcataattattgtgaaatt 982400  T
Q  97 aactcacgtgaacttttctccatt-gatccctcctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagt 195  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  982399 aactcacgtgaacttttctccatttgatccctcctaatctgcacactcctcgttctcctttcctctaaccaacaaagcttgaatgaacaacaatgaaagt 982300  T
Q  196 gtctatttcaaaattataattgatcaaccaactggattatttcataaattgattgttgtcggtgattacattttcaattttacctccctattcaacggcc 295  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  982299 gtctatttcaaaattataattgatcaacaaactggattatttcataaattgattgttgtcggtgattacattttcaattttacctccctgttcaacggcc 982200  T
Q  296 gacggaatgttcatcgtctct 316  Q
    |||||||||||||||||||||    
T  982199 gacggaatgttcatcgtctct 982179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 35718406 - 35718479
Alignment:
Q  30 gatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||| ||||||||||||||||||| ||||||||  ||||||||||   || |||||||||||||||||||||||    
T  35718406 gattcgttgacaccaaatcttagccatttaatatgtttaatccaaatgtcctaattattgtgaaattaactcac 35718479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 17603172 - 17603219
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  17603172 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 17603219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 21727578 - 21727531
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  21727578 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 21727531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 48648207 - 48648254
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  48648207 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 48648254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 265146 - 265102
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||    
T  265146 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 265102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 264470 - 264515
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||| |||||||||||||||||||||    
T  264470 ggatccattgacaccaggtgtcaatggatttgttgacaccaaatct 264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 14871157 - 14871202
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  14871157 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 14871202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 31974655 - 31974700
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||    
T  31974655 ggatccgttgacaccaagtgtcaacggattcgttgacaccaaatct 31974700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 46150778 - 46150733
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||| ||| ||||||||||| |||||||||||||||    
T  46150778 ggatccgttgacactaggtgtcaacggattcgttgacaccaaatct 46150733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 51469328 - 51469279
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagc 53  Q
    ||||||||||||| || | ||||||||||| |||||||||||||||||||    
T  51469328 ggatccgttgacatcaagtgtcaacggattcgttgacaccaaatcttagc 51469279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 51
Target Start/End: Original strand, 46149632 - 46149680
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  46149632 gggatccattgacaccaggtgtcaatggattcgttgacaccaaatctta 46149680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 54458714 - 54458670
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||    
T  54458714 ggatccgttgacacctggtgtcaacggattggttgacaccaaatc 54458670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 981673 - 981716
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||| ||||||| ||| |||||||||||||||    
T  981673 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 981716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 51
Target Start/End: Complemental strand, 17604002 - 17603963
Alignment:
Q  12 tgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||| ||||||||||| |||||||||||||||||    
T  17604002 tgacaccaggtgtcaacggattcgttgacaccaaatctta 17603963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 48649222 - 48649175
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||| |||||| |||| |||||||||||||||||    
T  48649222 ggatccattgacaccaggtgtcaacagattcgttgacaccaaatctta 48649175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 48765119 - 48765072
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  48765119 ggatccattgacaccaggtgtcaatggattcgttgacaccaaatctta 48765072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 55373755 - 55373712
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||    
T  55373755 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaat 55373712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 17605715 - 17605753
Alignment:
Q  9 cgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  17605715 cgttgacaccaggtgtcaacggattcgttgacaccaaat 17605753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 20212986 - 20213028
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||    
T  20212986 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 20213028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 31115649 - 31115603
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| ||| |||||| |||| |||||||||||||||    
T  31115649 gggatccgttgacactaggtgtcaacagattcgttgacaccaaatct 31115603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 37987238 - 37987280
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||    
T  37987238 gatccgttgacaccaggtgtcaatggattcgttgacaccaaat 37987280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Complemental strand, 40872856 - 40872814
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||||||||||||||| |||||||||||  ||||||||||||    
T  40872856 gatccgttgacaccaggtgtcaacggattcattgacaccaaat 40872814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 48
Target Start/End: Original strand, 48413329 - 48413367
Alignment:
Q  10 gttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  48413329 gttgacaccaggtgtcaacggattcgttgacaccaaatc 48413367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 51827542 - 51827496
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||| || ||||||||||| |||| ||||||||||||    
T  51827542 gatccgttgacacctggtgtcaacggattcgttgtcaccaaatctta 51827496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 37520610 - 37520565
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||| |||||| ||||||| ||| |||||||||||||||    
T  37520610 ggatccgttgataccaggtgtcaacgaattcgttgacaccaaatct 37520565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 37988267 - 37988222
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||| ||| |||||||||||||||    
T  37988267 ggatccattgacaccaggtgtcaacgaattcgttgacaccaaatct 37988222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 41458037 - 41458082
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||| |||||| |||||| ||||||||||| |||||||||||||||    
T  41458037 ggattcgttgataccaggtgtcaacggattcgttgacaccaaatct 41458082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 45081452 - 45081407
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||  | ||||||||||| |||||||||||||||    
T  45081452 ggatccgttgacacctagtgtcaacggattcgttgacaccaaatct 45081407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 48507081 - 48507036
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||||    
T  48507081 ggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatct 48507036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 52282459 - 52282418
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||| |||||||||||  ||||||||||||    
T  52282459 atccgttgacaccaggtgtcaacggattcattgacaccaaat 52282418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 959839 - 959883
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| |||||||| | | |||||||||||||    
T  959839 ggatccgttgacaccaggtgtcaacggttatattgacaccaaatc 959883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 960615 - 960571
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| |||||||| | | |||||||||||||    
T  960615 ggatccgttgacaccaggtgtcaacggttatattgacaccaaatc 960571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 13477061 - 13477105
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||| |||  |||||||||||||    
T  13477061 ggatccgttgacaccaggtgtcaacgaattcattgacaccaaatc 13477105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 20213580 - 20213536
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||| ||| ||| ||||||||||||||    
T  20213580 ggatccgttgacaccaggtgtcgacgaattcgttgacaccaaatc 20213536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 3 - 316
Target Start/End: Complemental strand, 24453776 - 24453463
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactca 102  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||    
T  24453776 gggattcgttgacaccaggtgtcaacggatttgttgacaccaaatcttagttatttaatacatttaatccaagggtcataattatt-tgaaattaactca 24453678  T
Q  103 cgtgaacttttctccatt-gatccctcctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctat 201  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24453677 cgtgaacttttctccatttgatccctcctaatctgcacactcctcattcttctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctat 24453578  T
Q  202 ttcaaaattataattgatcaaccaactggattatttcataaattgattgttgtcggtgattacattttcaattttacctccctattcaacggccgacgga 301  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  24453577 ttcaaaattataattgatcaaccaactgaattatttcataaattgattgttgtcggtgattacattttcaattttacctccttgttcaacggccgacgga 24453478  T
Q  302 atgttcatcgtctct 316  Q
    |||||||||||||||    
T  24453477 atgttcatcgtctct 24453463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 4 - 204
Target Start/End: Original strand, 8375991 - 8376193
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggat---ttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaact 100  Q
    |||||| ||| ||||||| ||||||| ||   || ||||||| |||||||||| |||||||||||||||||||||| || |||||||||| |||||||||    
T  8375991 ggatccattggcaccaggtgtcaacgaatccattattgacactaaatcttagccatttaatacatttaatccaagggtcctaattattgtaaaattaact 8376090  T
Q  101 cacgtgaacttttctccat-tgatccctcctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtct 199  Q
    ||| ||||| |||||| || ||||||  ||||||||||||||||||| |||||||  || ||||||| ||||||||||| |||||||||| |||||||||    
T  8376091 cacatgaacctttctcgatctgatcc--cctaatctgcacactcctctttctcctaagcgctaaccagcaaagcttgaaagaacaacaataaaagtgtct 8376188  T
Q  200 atttc 204  Q
     ||||    
T  8376189 ttttc 8376193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 194
Target Start/End: Complemental strand, 1418365 - 1418170
Alignment:
Q  4 ggatccgttgacaccaggcg---tcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaact 100  Q
    |||||||||||||||||| |   |||||| ||  ||| |||||||||| |||| ||||| ||  |||||||||||  || ||||||||||||||||||||    
T  1418365 ggatccgttgacaccaggtggtgtcaacgaatccgttaacaccaaatcgtagccatttattatgtttaatccaagcgtcctaattattgtgaaattaact 1418266  T
Q  101 cacgtgaacttttctcca-ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag 194  Q
    |||||||||  ||||||| |||||||| |||||||||||||||| | | ||||||||||| ||||||| |||| |||||| |||||||||||||||    
T  1418265 cacgtgaaccgttctccacttgatcccccctaatctgcacactcacaccttctcctttgcgctaaccaccaaatcttgaaagaacaacaatgaaag 1418170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 5 - 194
Target Start/End: Original strand, 38225304 - 38225496
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaatt-aactcac 103  Q
    ||||||||||||||||| ||||||| ||  ||| |||||||||| |||| ||||| ||  |||||||||||| |  |||||| ||||||||| |||||||    
T  38225304 gatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaaactcac 38225403  T
Q  104 gtgaacttttctcca-ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag 194  Q
    ||||||  ||||||| |||||||| |||||||||||| ||| | | ||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  38225404 gtgaaccgttctccacttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaag 38225496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 1417611 - 1417712
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| || | |||| ||| ||||||||||||    
T  1417611 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtcctgattaatgtaaaattaactcac 1417710  T
Q  104 gt 105  Q
    ||    
T  1417711 gt 1417712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 38226024 - 38225923
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| ||   |||||||| ||||||||||||    
T  38226024 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtccagattattgtaaaattaactcac 38225925  T
Q  104 gt 105  Q
    ||    
T  38225924 gt 38225923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 13785642 - 13785595
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  13785642 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 13785595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 197 - 239
Target Start/End: Complemental strand, 2533057 - 2533015
Alignment:
Q  197 tctatttcaaaattataattgatcaaccaactggattatttca 239  Q
    ||||||||||||||||||||||||||| |||||||||||||||    
T  2533057 tctatttcaaaattataattgatcaacaaactggattatttca 2533015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 7668485 - 7668530
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  7668485 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 7668530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 14686134 - 14686179
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  14686134 ggatccgttgacaccaagtgtcaacggatttgttgacaccaaatct 14686179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 25342500 - 25342545
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  25342500 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 25342545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 25343306 - 25343351
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  25343306 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 25343351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 25599025 - 25599070
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  25599025 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 25599070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 26636106 - 26636151
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  26636106 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 26636151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 30660596 - 30660641
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  30660596 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 30660641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 30661504 - 30661459
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  30661504 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 30661459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 37949608 - 37949653
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  37949608 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 37949653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 37950516 - 37950471
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  37950516 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 37950471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 43065164 - 43065119
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatctt 50  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||    
T  43065164 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatctt 43065119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 46428190 - 46428235
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  46428190 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 46428235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 45099942 - 45099899
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  45099942 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 45099899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 47719753 - 47719706
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  47719753 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatctta 47719706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 3772575 - 3772530
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  3772575 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaatct 3772530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 19067640 - 19067685
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||| | ||||||||||| |||||||||||||||    
T  19067640 ggatccgttgacaccacgtgtcaacggattcgttgacaccaaatct 19067685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 24389665 - 24389620
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||    
T  24389665 ggatccgttgacaccaggtgtcaacggattcattgacaccaaatct 24389620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 26636909 - 26636864
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||| ||| ||||||||||| |||||||||||||||    
T  26636909 ggatccgttgacacaaggtgtcaacggattcgttgacaccaaatct 26636864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 27948449 - 27948494
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  27948449 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 27948494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 3029247 - 3029203
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||    
T  3029247 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 3029203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 31278203 - 31278159
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||    
T  31278203 ggatccgttgacaccagatgtcaacggattcgttgacaccaaatc 31278159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 3688387 - 3688434
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||   |||||||||| |||||||||||||||||    
T  3688387 ggatccgttgacaccagatatcaacggattcgttgacaccaaatctta 3688434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 3903388 - 3903345
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||  |||||||||||||    
T  3903388 ggatccgttgacaccaggtgtcaacggatccgttgacaccaaat 3903345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 14305093 - 14305140
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  14305093 ggatccgttgacactaggtgtcaacggattcattgacaccaaatctta 14305140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 19068444 - 19068401
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||    
T  19068444 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 19068401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 24719338 - 24719381
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||  ||||||||||| |||||||||||||    
T  24719338 ggatccgttgacaccagatgtcaacggattcgttgacaccaaat 24719381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 37395548 - 37395505
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| ||| |||||||||    
T  37395548 ggatccgttgacaccaggtgtcaacggattcgttaacaccaaat 37395505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 16664174 - 16664129
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||  |||||||| ||||||    
T  16664174 ggatccgttgacaccaggtgtcaacggatccgttgacactaaatct 16664129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 17638534 - 17638489
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||  |||||||| ||||||    
T  17638534 ggatccgttgacaccaggtgtcaacggatccgttgacactaaatct 17638489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 18977818 - 18977773
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||||||| ||| |||||||||||    
T  18977818 ggatccattgacaccaggtgtcaacggattcgttaacaccaaatct 18977773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 21497032 - 21496987
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| ||||||| ||| |||||||||||||||    
T  21497032 ggatccgttgacaacaggtgtcaacgaattcgttgacaccaaatct 21496987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 25343288 - 25343243
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||||    
T  25343288 ggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatct 25343243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 40273563 - 40273608
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||||    
T  40273563 ggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatct 40273608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 42421099 - 42421054
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||| |||||||||||  |||||| ||||||||||||||||||||    
T  42421099 ggatctgttgacaccagatgtcaaccgatttgttgacaccaaatct 42421054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 45161972 - 45162017
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| || |||||||| |||||||||||||||    
T  45161972 ggatccattgacaccaggtgttaacggattcgttgacaccaaatct 45162017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 46428866 - 46428821
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| ||||||| |||||||    
T  46428866 ggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatct 46428821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 21156501 - 21156541
Alignment:
Q  197 tctatttcaaaattataattgatcaaccaactggattattt 237  Q
    ||||||||||||||||||||||||||| | || ||||||||    
T  21156501 tctatttcaaaattataattgatcaacaagctagattattt 21156541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 23 - 316
Target Start/End: Complemental strand, 16676 - 16394
Alignment:
Q  23 gtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcacgtgaacttttctccat-tg 121  Q
    ||||||||||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||    
T  16676 gtcaacggatttgttaacaccaaatcttagccatttaatacatttaatccaagggtcataattattgtgaaattaactcacgtgaacctttctccatctg 16577  T
Q  122 atccctcctaatctgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaattataattgatca 221  Q
    |||||||||            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16576 atccctcct------------cctctttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttcaaaattataattgatca 16489  T
Q  222 accaactggattatttcataaattgattgttgtcggtgattacattttcaattttacctccctattcaacggccgacggaatgttcatcgtctct 316  Q
    || ||||||||||||||||| ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16488 acaaactggattatttcatagattgattgttgtcggtgattcaattttcaattttacctccctattcaacggccgacggaatgttcatcgtctct 16394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 22119 - 22076
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  22119 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 22076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 4 - 194
Target Start/End: Original strand, 22301198 - 22301390
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||  ||| |||||||||| |||| ||||| ||  |||||||||||| |  |||||| ||||||||||||||||    
T  22301198 ggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaactcac 22301297  T
Q  104 gtgaacttttctcca-ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag 194  Q
    ||||||  ||||||| |||||||| |||||||||||| ||| | | ||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  22301298 gtgaaccgttctccacttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaag 22301390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 204
Target Start/End: Original strand, 24120535 - 24120702
Alignment:
Q  36 ttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcacgtgaacttttctccat-tgatccctcctaatc 134  Q
    ||||||| |||||||||| |||||||||||||||| ||| | || ||| |||||| |||||||||||| ||||| ||||||||| ||||||  ||||||     
T  24120535 ttgacactaaatcttagccatttaatacatttaattcaatggtcctaactattgtaaaattaactcacatgaacctttctccatctgatcc--cctaatt 24120632  T
Q  135 tgcacactcctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaagtgtctatttc 204  Q
    |||||||||||| || ||||   | |||||||| |||||||||| |||||||||||||||||||| ||||    
T  24120633 tgcacactcctctttttcctcaacgctaaccaataaagcttgaaagaacaacaatgaaagtgtctttttc 24120702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 22301918 - 22301817
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| ||   |||||||| ||||||||||||    
T  22301918 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtcccgattattgtaaaattaactcac 22301819  T
Q  104 gt 105  Q
    ||    
T  22301818 gt 22301817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 4 - 135
Target Start/End: Original strand, 26752031 - 26752163
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||  ||| |||| ||||| |||| ||||| ||  |||||||||||| || |||||||||||||||||||||||    
T  26752031 ggatccgttgacaccaggtgtcaacgaatccgttaacactaaatcgtagccatttattatgtttaatccaagggtcctaattattgtgaaattaactcac 26752130  T
Q  104 gtgaacttttctcca-ttgatccctcctaatct 135  Q
    ||||||  ||||||| |||||||| ||||||||    
T  26752131 gtgaaccgttctccacttgatcccccctaatct 26752163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 105
Target Start/End: Complemental strand, 26752772 - 26752670
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactca 102  Q
    ||||||||||||||||||| ||||||| ||| ||||||| ||||||||| | |||||||||||||||||||||| || | |||| ||| |||||||||||    
T  26752772 gggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccatttaatacatttaatccaagggtcctgattactgtaaaattaactca 26752673  T
Q  103 cgt 105  Q
    |||    
T  26752672 cgt 26752670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 12725663 - 12725619
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  12725663 ggatccgttgacaccaggtgtcaacggatttgttgacaccaaatc 12725619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 1297171 - 1297126
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  1297171 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 1297126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 9275590 - 9275635
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  9275590 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 9275635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 29719450 - 29719495
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  29719450 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 29719495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 9540335 - 9540382
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||||    
T  9540335 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatctta 9540382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 15902930 - 15902883
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  15902930 ggatccgttgacaccaggtgtcaacggattcgttgacacaaaatctta 15902883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 29513195 - 29513149
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctt 50  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  29513195 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatctt 29513149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 1296383 - 1296428
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  1296383 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 1296428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 9276378 - 9276333
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  9276378 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 9276333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 11750261 - 11750306
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||    
T  11750261 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 11750306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 15774206 - 15774251
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| || ||||||| |||||||||||||||||||    
T  15774206 ggatccgttgacacctggtgtcaacgaatttgttgacaccaaatct 15774251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 22560616 - 22560571
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||||    
T  22560616 ggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 22560571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 16693015 - 16692975
Alignment:
Q  11 ttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||| ||||||||||| |||||||||||||||||    
T  16693015 ttgacaccaggtgtcaacggattcgttgacaccaaatctta 16692975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 23857072 - 23857028
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||||| || ||||||||||| ||||||||||||||    
T  23857072 ggatccgttgacacctggtgtcaacggattggttgacaccaaatc 23857028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 27178693 - 27178649
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| |||||||||||  |||||||||||||    
T  27178693 ggatccgttgacaccaggtgtcaacggattgtttgacaccaaatc 27178649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 29512376 - 29512420
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||| || ||||||| |||||||||||||||||||    
T  29512376 gatccgttgacacctggtgtcaacgaatttgttgacaccaaatct 29512420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 27177916 - 27177959
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||    
T  27177916 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 27177959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 36237635 - 36237678
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| |||||||||||  ||||||||||||    
T  36237635 ggatccgttgacaccaggtgtcaacggattcattgacaccaaat 36237678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 15902124 - 15902169
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||||| | | ||||||||||||||    
T  15902124 ggatccgttgacaccaggtgtcaacggttatattgacaccaaatct 15902169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 18174718 - 18174673
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| ||||||| ||| |||||||||||||||    
T  18174718 ggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatct 18174673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 18820435 - 18820480
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||| |||||| |||| ||||||||||| ||||||||||||||    
T  18820435 gggatccattgacatcaggtgtcaacggattcgttgacaccaaatc 18820480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 29559468 - 29559423
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||| |||||||||||| ||||||| ||| |||||||||||||||    
T  29559468 ggatctgttgacaccaggtgtcaacgaattcgttgacaccaaatct 29559423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 49
Target Start/End: Complemental strand, 42182659 - 42182618
Alignment:
Q  8 ccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||| ||||| ||||| |||||||||||||||    
T  42182659 ccgttgacaccaggtgtcaagggattcgttgacaccaaatct 42182618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 11751117 - 11751073
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||    
T  11751117 ggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 11751073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 18174103 - 18174147
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||    
T  18174103 ggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 18174147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 18821279 - 18821235
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||| ||||||||||| |||||||||||  |||||||||||||    
T  18821279 ggatccattgacaccaggtgtcaacggattaattgacaccaaatc 18821235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 23856640 - 23856684
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||| || |||||||||||  ||||||||||||||    
T  23856640 gatccgttgacacctggtgtcaacggattgattgacaccaaatct 23856684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 34812904 - 34812860
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||  ||||||||||| ||| ||||||||||    
T  34812904 ggatccgttgacaccagttgtcaacggattcgttaacaccaaatc 34812860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 36238779 - 36238731
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||| |||||||||||  ||||||||||  ||||||||||||||||    
T  36238779 gggatccattgacaccaggtatcaacggattcattgacaccaaatctta 36238731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 12 - 194
Target Start/End: Original strand, 1553419 - 1553603
Alignment:
Q  12 tgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcacgtgaactt 111  Q
    |||||||||| ||||||| ||  ||| |||||||||| |||| ||||| ||  |||||||||||| |  |||||| ||||||||||||||||||||||      
T  1553419 tgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaactcacgtgaaccg 1553518  T
Q  112 ttctcca-ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaag 194  Q
    ||||||| |||||||| |||||||||||| ||| | | ||||||||||| ||||||| ||||||||||| |||||||||||||||    
T  1553519 ttctccacttgatcccccctaatctgcactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaacaatgaaag 1553603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 1554131 - 1554030
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||| | |||||||||||||||||||||| ||   |||||||| ||||||||||||    
T  1554131 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatcttaaccatttaatacatttaatccaagggtcccgattattgtaaaattaactcac 1554032  T
Q  104 gt 105  Q
    ||    
T  1554031 gt 1554030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 7632098 - 7632145
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  7632098 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 7632145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 19128773 - 19128820
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  19128773 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 19128820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 6476839 - 6476794
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  6476839 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 6476794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 29046032 - 29046077
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  29046032 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 29046077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 234704 - 234747
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  234704 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 234747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 237869 - 237826
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  237869 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 237826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 1281839 - 1281886
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||    
T  1281839 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatctta 1281886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 1283548 - 1283501
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  1283548 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatctta 1283501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 19359707 - 19359750
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  19359707 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 19359750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 235595 - 235640
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||    
T  235595 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 235640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 10554550 - 10554595
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  10554550 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatct 10554595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 25858212 - 25858257
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||||| ||| ||||||||||| ||||||||||||||    
T  25858212 gggatccgttgacactaggtgtcaacggattcgttgacaccaaatc 25858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 27364535 - 27364490
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||    
T  27364535 ggatccgttgacaccaggtgtcaatggattcgttgacaccaaatct 27364490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 28705927 - 28705882
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||    
T  28705927 ggatccgttgacaccaggtgtcaacggattcgttgacactaaatct 28705882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 29087928 - 29087973
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||||||||  ||||||||||||||    
T  29087928 ggatccgttgacaccaggtgtcaacggattcattgacaccaaatct 29087973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 1283573 - 1283533
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacacca 44  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  1283573 ggatccgttgacaccaggtgtcaacggattcgttgacacca 1283533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 10554525 - 10554565
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacacca 44  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  10554525 ggatccgttgacaccaggtgtcaacggattcgttgacacca 10554565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 38057643 - 38057599
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||||    
T  38057643 ggatccgttgacactaggtgtcaacggattggttgacaccaaatc 38057599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 14478924 - 14478967
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||    
T  14478924 ggatccgttgacatcaggtgtcaacggattcgttgacaccaaat 14478967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 19360524 - 19360481
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||    
T  19360524 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 19360481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 28705170 - 28705213
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||| ||||||||||| ||| |||||||||||    
T  28705170 atccgttgacaccaggtgtcaacggattcgtttacaccaaatct 28705213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 38056797 - 38056840
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||    
T  38056797 ggatctgttgacaccaggtgtcaacggattggttgacaccaaat 38056840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 22798905 - 22798951
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||| | |||| ||||||||||| |||||||||||||||||    
T  22798905 gatccgttgatatcaggtgtcaacggattcgttgacaccaaatctta 22798951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 36038697 - 36038743
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||||  |||||||||| ||| |||||||||||    
T  36038697 gggatccgttgacaccaggtatcaacggattcgttaacaccaaatct 36038743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 236977 - 236932
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||||||| || ||||||||||||    
T  236977 ggatccattgacaccaggtgtcaacggattcgtagacaccaaatct 236932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 4084883 - 4084928
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| || ||||||| ||| |||||||||||||||    
T  4084883 ggatccgttgacacctggtgtcaacgaattcgttgacaccaaatct 4084928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 17071227 - 17071272
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| ||||||| ||| |||||||||||||||    
T  17071227 ggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatct 17071272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 22799806 - 22799761
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||| ||||| | ||| |||||||||||||||||    
T  22799806 atccgttgacaccaggtgtcaatgaattcgttgacaccaaatctta 22799761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 34600264 - 34600309
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| ||||||| ||| |||||||||||||||    
T  34600264 ggatccgttgacatcaggtgtcaacgaattcgttgacaccaaatct 34600309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34709085 - 34709040
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||| |||||||||||| ||||||||||| |||| ||||||||||    
T  34709085 ggatctgttgacaccaggtgtcaacggattcgttggcaccaaatct 34709040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 17071842 - 17071798
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||    
T  17071842 ggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 17071798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 20854952 - 20854908
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||||| || || ||||| |||||||||||||||    
T  20854952 gatccgttgacaccaggtgttaatggattcgttgacaccaaatct 20854908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 4 - 193
Target Start/End: Complemental strand, 27442189 - 27441999
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||  ||| |||||||||| |||| ||||| ||  |||||||||||| |  |||||| ||||||||||||||||    
T  27442189 ggatccgttgacaccaggtgtcaacgaatccgttaacaccaaatcatagccatttattatgtttaatccaagggttctaattactgtgaaattaactcac 27442090  T
Q  104 gtgaacttttctcca-ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaatgaacaacaatgaaa 193  Q
    ||||||  ||||||| |||||||| |||||||| ||| ||| | | ||||||||||| ||||||| ||||||||||| |||||| |||||||    
T  27442089 gtgaaccattctccacttgatcccccctaatct-cactctcacaccttctcctttgcgctaaccaccaaagcttgaaagaacaagaatgaaa 27441999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 4 - 105
Target Start/End: Original strand, 27441470 - 27441571
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||||||||||||||||| ||||||| ||| ||||||| ||||||||| | |||||||||||||||||||||| |    |||||||| ||||||||||||    
T  27441470 ggatccgttgacaccaggtgtcaacgaattcgttgacatcaaatcttaaccatttaatacatttaatccaagggttccgattattgtaaaattaactcac 27441569  T
Q  104 gt 105  Q
    ||    
T  27441570 gt 27441571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 183994 - 183893
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatccaaggatcataattattgtgaaattaactcac 103  Q
    |||| |||||| |||||  ||||||| ||| ||| ||||||||||||| |||||||||||||||||||||||  || | |||||||| ||||||||||||    
T  183994 ggattcgttgataccagatgtcaacgaattcgttaacaccaaatcttaactatttaatacatttaatccaagtgtcctgattattgtaaaattaactcac 183895  T
Q  104 gt 105  Q
    ||    
T  183894 gt 183893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 194
Target Start/End: Original strand, 183320 - 183435
Alignment:
Q  81 taattattgtgaaattaactcacgtgaacttttctcca-ttgatccctcctaatctgcacactc-ctcgttctcctttgctctaaccaacaaagcttgaa 178  Q
    ||||||||||||||||||||||| |||||  ||||||| ||||||||  |||||||||||||||   | ||||||||||| | ||| | |||||||| ||    
T  183320 taattattgtgaaattaactcacatgaaccgttctccacttgatccccgctaatctgcacactcaaaccttctcctttgcgccaactaccaaagcttaaa 183419  T
Q  179 tgaacaacaatgaaag 194  Q
     |||||||||||||||    
T  183420 agaacaacaatgaaag 183435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 71
Target Start/End: Original strand, 41974644 - 41974711
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctatttaatacatttaatc 71  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||| ||| | || ||||||||    
T  41974644 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctcagccattcattatatttaatc 41974711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 38576350 - 38576305
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  38576350 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 38576305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 32414572 - 32414525
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||||||    
T  32414572 ggatctgttgacaccaggtgtcaacggattcgttgacaccaaatctta 32414525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 26654425 - 26654379
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  26654425 gatccgttgacaccaggtgtcaatggattcgttgacaccaaatctta 26654379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 3165170 - 3165125
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||||    
T  3165170 ggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 3165125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 8997022 - 8996977
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||| |||||| |||||| ||||||||||||||||||||    
T  8997022 ggatccgttgataccaggtgtcaactgatttgttgacaccaaatct 8996977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 32979872 - 32979828
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||| ||||||| ||||||||||    
T  32979872 ggatccgttgacaccaggtgtcaacgaatttgttaacaccaaatc 32979828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 8372917 - 8372960
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||||||||||||| || ||||||||||| |||||||||||||    
T  8372917 ggatccgttgacacctggtgtcaacggattcgttgacaccaaat 8372960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 8373741 - 8373698
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||| | ||||||||||| |||||||||||||    
T  8373741 ggatccgttgacaccaagtgtcaacggattcgttgacaccaaat 8373698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 22320378 - 22320425
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||  ||||| ||||||||||| |||||||||||||||||    
T  22320378 ggatccgttgatgccaggtgtcaacggattcgttgacaccaaatctta 22320425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 31641515 - 31641562
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||| ||||| ||||| |||||||||||||||||    
T  31641515 ggatccattgacaccaggtgtcaatggattcgttgacaccaaatctta 31641562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 37732830 - 37732877
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||||||| || ||||||||||| |||||||||||| ||||    
T  37732830 ggatccgttgacacctggtgtcaacggattcgttgacaccaaaactta 37732877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 48
Target Start/End: Original strand, 9197101 - 9197143
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||    
T  9197101 atccgttgacaccaggtgtcaacgaattcgttgacaccaaatc 9197143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 11686230 - 11686276
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctt 50  Q
    |||||| ||| ||||||| ||||||||||| ||||||||||||||||    
T  11686230 ggatccattggcaccaggtgtcaacggattcgttgacaccaaatctt 11686276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 51
Target Start/End: Original strand, 28929850 - 28929896
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||| ||||||||||  ||||||||||| |||||||||||||||||    
T  28929850 gatccattgacaccagatgtcaacggattcgttgacaccaaatctta 28929896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 39860114 - 39860163
Alignment:
Q  4 ggatccgttgacaccaggcgtcaac--ggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||  ||||| |||||||||||||||||    
T  39860114 ggatccgttgacaccaggtgtcaacaaggattcgttgacaccaaatctta 39860163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 31602020 - 31602065
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||| |||||||||||| ||||||| ||| |||||||||||||||    
T  31602020 ggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatct 31602065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 32413762 - 32413807
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||||| | | ||||||||||||||    
T  32413762 ggatccgttgacaccaggtgtcaacggttatattgacaccaaatct 32413807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 39860922 - 39860877
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||||| | | ||||||||||||||    
T  39860922 ggatccgttgacaccaggtgtcaacggttatattgacaccaaatct 39860877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 9197868 - 9197824
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||| | ||||||| ||| ||||||||||||||    
T  9197868 ggatccgttgacaccaagtgtcaacgaattcgttgacaccaaatc 9197824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 14825647 - 14825691
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||| ||| ||||||||||| ||||||| ||||||    
T  14825647 ggatccgttgacactaggtgtcaacggattcgttgacatcaaatc 14825691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 17725702 - 17725658
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||| |||| ||||||| ||| ||||||||||||||    
T  17725702 ggatccgttgacagcaggtgtcaacgaattcgttgacaccaaatc 17725658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 26652297 - 26652341
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||    
T  26652297 ggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 26652341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 5428 - 5385
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| |||||||||||||||||||||||||    
T  5428 ggatccgttgacaccaggtgtcaacggatttgttgacaccaaat 5385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 24551972 - 24551925
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||    
T  24551972 ggatccattgacaccaggtgtcaacggatttgttgacaccaaatctta 24551925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 47688528 - 47688483
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  47688528 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 47688483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 55976172 - 55976217
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||| ||||||||||| |||||||||||||||||    
T  55976172 atccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 55976217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 2444376 - 2444419
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  2444376 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 2444419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 8248569 - 8248522
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||    
T  8248569 ggatccgttgacaccagatgtcaacggattcgttgacaccaaatctta 8248522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 8266234 - 8266187
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||    
T  8266234 ggatccgttgacaccagatgtcaacggattcgttgacaccaaatctta 8266187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 52871303 - 52871346
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  52871303 gatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 52871346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 53772811 - 53772854
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||||||| |||||||||||||    
T  53772811 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaat 53772854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 5 - 51
Target Start/End: Complemental strand, 55001488 - 55001442
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  55001488 gatccgttgacaccaggtgtcaacggattcgttgacactaaatctta 55001442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 599350 - 599305
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||    
T  599350 ggatccgttgacacctggtgtcaacggattcgttgacaccaaatct 599305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 9365173 - 9365218
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||| |||||||| ||||||| |||||||||||||||||||    
T  9365173 ggatccgttaacaccaggtgtcaacgaatttgttgacaccaaatct 9365218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 16903692 - 16903647
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||    
T  16903692 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatct 16903647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 20774229 - 20774184
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||    
T  20774229 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 20774184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 26147081 - 26147036
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  26147081 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 26147036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 30573758 - 30573713
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||    
T  30573758 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 30573713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 47785848 - 47785803
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||||    
T  47785848 ggatctgttgacaccaggtgtcaacggattcgttgacaccaaatct 47785803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 53732439 - 53732484
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||| ||||||    
T  53732439 ggatccgttgacaccaggtgtcaacggattcgttgacactaaatct 53732484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 53773635 - 53773590
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| ||||||||||| |||||||||||||||    
T  53773635 ggatccgttgacatcaggtgtcaacggattcgttgacaccaaatct 53773590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 3654564 - 3654520
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||||    
T  3654564 ggatccgttgacgccaggtgtcaacggattcgttgacaccaaatc 3654520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 31329766 - 31329722
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||||||| ||| ||||||||||    
T  31329766 ggatccgttgacaccaggtgtcaacggattcgttaacaccaaatc 31329722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 42882730 - 42882686
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||    
T  42882730 ggatccgttgacaccagatgtcaacggattcgttgacaccaaatc 42882686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 8247700 - 8247747
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||||||| || ||||||||||| |||||||| ||||||||    
T  8247700 ggatccgttgacacctggtgtcaacggattcgttgacacaaaatctta 8247747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 8265365 - 8265412
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||||||| || ||||||||||| |||||||| ||||||||    
T  8265365 ggatccgttgacacctggtgtcaacggattcgttgacacaaaatctta 8265412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 19080389 - 19080432
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||| |||||||||||| ||||||||||| |||||||||||||    
T  19080389 ggatctgttgacaccaggtgtcaacggattcgttgacaccaaat 19080432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 19550290 - 19550333
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||    
T  19550290 ggatcccttgacaccaggtgtcaacggattcgttgacaccaaat 19550333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 24158869 - 24158822
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||| |||||| |||| |||||||||||||||||    
T  24158869 ggatccattgacaccaggtgtcaacagattcgttgacaccaaatctta 24158822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 55000691 - 55000738
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| ||||||||||  ||||||||||| |||||||||||||||||    
T  55000691 ggatccattgacaccagatgtcaacggattcgttgacaccaaatctta 55000738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 55977004 - 55976957
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||| | ||||||||| ||||||||||| |||||||||||||||||    
T  55977004 ggatccatcgacaccaggtgtcaacggattcgttgacaccaaatctta 55976957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 42
Target Start/End: Complemental strand, 12368704 - 12368666
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacac 42  Q
    |||||||||||||| ||| ||||||||||||||||||||    
T  12368704 ggatccgttgacactaggtgtcaacggatttgttgacac 12368666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 2182570 - 2182525
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||||| | | ||||||||||||||    
T  2182570 ggatccgttgacaccaggtgtcaacggttatattgacaccaaatct 2182525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 2446210 - 2446165
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||| |||| ||| |||||||||||    
T  2446210 ggatccgttgacaccaggtgtcaacagattcgttaacaccaaatct 2446165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 5046531 - 5046486
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||||||  ||||| |||| |||||||||||||||    
T  5046531 ggatccgttgacaccaggtatcaacagattcgttgacaccaaatct 5046486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 7841548 - 7841593
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||| || |||||||| |||||||||||||||    
T  7841548 ggatccgttgacatcaggtgttaacggattcgttgacaccaaatct 7841593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 9365862 - 9365821
Alignment:
Q  7 tccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||||| |||||||||||  |||||||||||||    
T  9365862 tccgttgacaccaggtgtcaacggattcattgacaccaaatc 9365821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 19551097 - 19551052
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||||| | | ||||||||||||||    
T  19551097 ggatccgttgacaccaggtgtcaacggttatattgacaccaaatct 19551052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 24374793 - 24374838
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||  ||||||| ||| |||||||||||||||    
T  24374793 ggatccgttgacaccagctgtcaacgaattcgttgacaccaaatct 24374838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 56262482 - 56262527
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||| | ||| |||||||||||||||    
T  56262482 ggatccgttgacaccaggtgtcaatgaattcgttgacaccaaatct 56262527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 16903717 - 16903677
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacacca 44  Q
    |||| ||||||||||||| ||||||||||| ||||||||||    
T  16903717 ggattcgttgacaccaggtgtcaacggattcgttgacacca 16903677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 26159670 - 26159626
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||| || | ||||||||||| ||||||||||||||    
T  26159670 ggatccgttgacatcaagtgtcaacggattcgttgacaccaaatc 26159626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 43146692 - 43146652
Alignment:
Q  9 cgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||| |||||||||||  ||||||||||||||    
T  43146692 cgttgacaccaggtgtcaacggattccttgacaccaaatct 43146652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 46168142 - 46168186
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||||||||||| |||| ||||||||| |||||||||| |||||    
T  46168142 ggatccgttgacatcaggtgtcaacggaattgttgacactaaatc 46168186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 47687913 - 47687957
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| || |||| ||| ||||||||||||||    
T  47687913 ggatccgttgacaccaggtgttaacgaattcgttgacaccaaatc 47687957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 53147875 - 53147919
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||| ||||||||||  ||||||||||| ||||||||||||||    
T  53147875 ggatccattgacaccagatgtcaacggattcgttgacaccaaatc 53147919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 53733773 - 53733737
Alignment:
Q  11 ttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||||||||| ||||||||||| |||||||||||||    
T  53733773 ttgacaccaggtgtcaacggattcgttgacaccaaat 53733737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 25469135 - 25469088
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  25469135 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatctta 25469088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 4433896 - 4433851
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  4433896 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 4433851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 7558452 - 7558497
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||| | |||||||||||||||||||||||||||    
T  7558452 ggatccgttgacaccaagtgtcaacggatttgttgacaccaaatct 7558497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 10121601 - 10121556
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  10121601 ggatccgttgacaccaggtgtcaacggattggttgacaccaaatct 10121556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 34309279 - 34309234
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  34309279 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 34309234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 49680814 - 49680859
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  49680814 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 49680859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 10120786 - 10120830
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||    
T  10120786 ggatccgttgacaccaggtgtcaacggattggttgacaccaaatc 10120830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 47967865 - 47967911
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctt 50  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||    
T  47967865 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatctt 47967911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 169676 - 169631
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| |||| ||||||||||||||    
T  169676 ggatccgttgacaccaggtgtcaacgaatttattgacaccaaatct 169631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 4439255 - 4439210
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||    
T  4439255 ggatccgttgacacctggtgtcaacggattcgttgacaccaaatct 4439210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 7559248 - 7559203
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||    
T  7559248 ggatccgttgacaccaggtgtcaacggatccgttgacaccaaatct 7559203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 13262836 - 13262881
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  13262836 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 13262881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 13263565 - 13263520
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||    
T  13263565 ggatccgttgacaccaggtgtcaatggattcgttgacaccaaatct 13263520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 30663361 - 30663406
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||    
T  30663361 ggatccgttgacaccaggtatcaacggattcgttgacaccaaatct 30663406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 30664025 - 30663980
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| || ||||||||||| |||||||||||||||    
T  30664025 ggatccgttgacacctggtgtcaacggattcgttgacaccaaatct 30663980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 30932844 - 30932799
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||    
T  30932844 ggatccgttgacaccaggtgtcaacggattcgttggcaccaaatct 30932799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 36389778 - 36389823
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| || ||||||||||||| |||||||||||||    
T  36389778 ggatccgttgacacctggtgtcaacggatttgctgacaccaaatct 36389823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 43252489 - 43252533
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||    
T  43252489 atccgttgacac-aggtgtcaacggatttgttgacaccaaatctta 43252533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 17172711 - 17172667
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||||||| |||||| |||||||    
T  17172711 ggatccgttgacaccaggtgtcaacggattcgttgacgccaaatc 17172667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 19172624 - 19172580
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  19172624 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 19172580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 24991973 - 24992017
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  24991973 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatc 24992017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 26118676 - 26118716
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacacca 44  Q
    |||||||||||||||||  ||||||||||||||||||||||    
T  26118676 ggatccgttgacaccagatgtcaacggatttgttgacacca 26118716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 46391915 - 46391867
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttag 52  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||| ||||    
T  46391915 ggatccgttgacaccaggtgtcaacggattcgttgacatcaaatattag 46391867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 17171934 - 17171977
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||    
T  17171934 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaat 17171977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Complemental strand, 27256761 - 27256718
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||    
T  27256761 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 27256718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 28182121 - 28182074
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||| |||||||||||| |||||||||||  ||||||||||||||||    
T  28182121 ggatctgttgacaccaggtgtcaacggattctttgacaccaaatctta 28182074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 34308476 - 34308519
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||    
T  34308476 ggatccgttgacaccaggtgtcaacgtattcgttgacaccaaat 34308519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 37853184 - 37853129
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttagctattta 59  Q
    ||||||||| ||| |||| ||||||||||| ||||||||||||| ||||| |||||    
T  37853184 ggatccgttaacatcaggtgtcaacggattcgttgacaccaaattttagccattta 37853129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 47
Target Start/End: Original strand, 45818025 - 45818067
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    ||||||||||||||||| |||||||||||  ||||||||||||    
T  45818025 gatccgttgacaccaggtgtcaacggattcattgacaccaaat 45818067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 168893 - 168938
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||| ||||||  ||||||||||||||    
T  168893 ggatccgttgacaccaggtgtcagcggattcattgacaccaaatct 168938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 7406248 - 7406293
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| || |||| ||| |||||||||||||||    
T  7406248 ggatccgttgacaccaggtgttaacgaattcgttgacaccaaatct 7406293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 8987793 - 8987838
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||| ||||||| |||| ||||||||||| |||||||||||||||    
T  8987793 ggatcggttgacatcaggtgtcaacggattcgttgacaccaaatct 8987838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 11548803 - 11548848
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| |||||| |||| |||||||| ||||||    
T  11548803 ggatccgttgacaccaggtgtcaacagattcgttgacactaaatct 11548848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 11704857 - 11704812
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||| | ||||||||||| |||||||||||||||    
T  11704857 ggatccattgacaccaagtgtcaacggattcgttgacaccaaatct 11704812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 19171780 - 19171825
Alignment:
Q  3 gggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||| || | ||||||||||| ||||||||||||||    
T  19171780 gggatccgttgacatcaagtgtcaacggattcgttgacaccaaatc 19171825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 25468513 - 25468558
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| |||||||||||  ||||||||||||||    
T  25468513 ggatccattgacaccaggtgtcaacggattcattgacaccaaatct 25468558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 28181536 - 28181581
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    ||||||||||||||| || ||||||| ||| |||||||||||||||    
T  28181536 ggatccgttgacacctggtgtcaacgaattcgttgacaccaaatct 28181581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 8988596 - 8988552
Alignment:
Q  5 gatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| |||||||||| |||||||||||  ||||||||||||||    
T  8988596 gatccgctgacaccaggtgtcaacggattccttgacaccaaatct 8988552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 51
Target Start/End: Original strand, 30931898 - 30931938
Alignment:
Q  11 ttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||| ||||||||||| ||| |||||||||||||    
T  30931898 ttgacaccaggtgtcaacggattcgttaacaccaaatctta 30931938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 36390416 - 36390372
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||| ||  ||||||||||||||    
T  36390416 ggatccgttgacaccaggtgtcaacgaatccgttgacaccaaatc 36390372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 52
Target Start/End: Complemental strand, 37577694 - 37577646
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatcttag 52  Q
    |||||| |||| |||||| ||||||||||| ||||||||||||| ||||    
T  37577694 ggatccattgataccaggtgtcaacggattcgttgacaccaaattttag 37577646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 46812231 - 46812191
Alignment:
Q  9 cgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||| |||||||| ||||||||||| |||||||||||||||    
T  46812231 cgttaacaccaggtgtcaacggattcgttgacaccaaatct 46812191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 10171279 - 10171324
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  10171279 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 10171324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 19311004 - 19311049
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| || ||||||||||||||||||||||||    
T  19311004 ggatccgttgacaccaggtgttaacggatttgttgacaccaaatct 19311049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 26529561 - 26529516
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||    
T  26529561 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatct 26529516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 19311875 - 19311828
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||| ||||||||||||| ||||||||||| |||||||||||||||||    
T  19311875 ggattcgttgacaccaggtgtcaacggattcgttgacaccaaatctta 19311828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 4 - 51
Target Start/End: Complemental strand, 33436322 - 33436275
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    |||||||||||||||||  ||||||||||| |||||||||||||||||    
T  33436322 ggatccgttgacaccagatgtcaacggattcgttgacaccaaatctta 33436275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 8488472 - 8488517
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||    
T  8488472 ggatccattgacaccaggtgtcaacggattcgttgacaccaaatct 8488517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 10172014 - 10171969
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  10172014 ggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatct 10171969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 49
Target Start/End: Original strand, 19322990 - 19323031
Alignment:
Q  8 ccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||| ||||||||||| |||||||||||||||    
T  19322990 ccgttgacaccaggtgtcaacggattcgttgacaccaaatct 19323031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 19323815 - 19323770
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  19323815 ggatccgttgacaccaggtgtcaacgaattcgttgacaccaaatct 19323770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 26528826 - 26528871
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||||||||||||||| ||||||| ||| |||||||||||||||    
T  26528826 ggatccgttgacaccaggtgtcaacgcattcgttgacaccaaatct 26528871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 51
Target Start/End: Original strand, 33435343 - 33435390
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatctta 51  Q
    ||||||||||||||| || || |||||||| |||||||||||||||||    
T  33435343 ggatccgttgacacctggtgttaacggattcgttgacaccaaatctta 33435390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 9441240 - 9441285
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||| ||||||||||||| ||||||||||  |||||||||||||||    
T  9441240 ggattcgttgacaccaggtgtcaacggatccgttgacaccaaatct 9441285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Complemental strand, 8489328 - 8489284
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||| ||| ||| ||||||||||    
T  8489328 ggatccgttgacaccaggtgtcaacgaattcgttaacaccaaatc 8489284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 18227735 - 18227778
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||  ||||||||||| ||||||||||||||    
T  18227735 ggatccgttgacaccagt-gtcaacggattcgttgacaccaaatc 18227778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 26595 - 26639
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||    
T  26595 ggatccgttgacaccaggtgtcaacggattcgttgacaccaaatc 26639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 39901 - 39942
Alignment:
Q  6 atccgttgacaccaggcgtcaacggatttgttgacaccaaat 47  Q
    |||||||||||||||| ||||||||||| |||||||||||||    
T  39901 atccgttgacaccaggtgtcaacggattcgttgacaccaaat 39942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold2007
Description:

Target: scaffold2007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 754 - 799
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| |||||||||||  |||||||||| |||||||||||||||    
T  754 ggatccattgacaccaggtttcaacggattcgttgacaccaaatct 799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 49
Target Start/End: Complemental strand, 23777 - 23732
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatct 49  Q
    |||||| ||||||||||  ||||||||||| |||||||||||||||    
T  23777 ggatccattgacaccagttgtcaacggattcgttgacaccaaatct 23732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1207 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1207
Description:

Target: scaffold1207; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 48
Target Start/End: Original strand, 1590 - 1634
Alignment:
Q  4 ggatccgttgacaccaggcgtcaacggatttgttgacaccaaatc 48  Q
    ||||| |||||||||||| ||||||| ||| ||||||||||||||    
T  1590 ggatcggttgacaccaggtgtcaacgaattcgttgacaccaaatc 1634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University