View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_high_2 (Length: 897)
Name: NF9812_high_2
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_high_2 |
 | |
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| [»] scaffold0137 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 455; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 477
Target Start/End: Original strand, 46283113 - 46283571
Alignment:
| Q |
19 |
atgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagct |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283113 |
atgtgtacctagcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagct |
46283212 |
T |
|
| Q |
119 |
tagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaattgtttcttcgattgaacagaaggaa |
218 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46283213 |
tagcgtcgaagagaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaatcgtttcttcgattgaacagaaggaa |
46283312 |
T |
|
| Q |
219 |
gaaggtagaaagaatgaagatcatgttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgt |
318 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283313 |
gaaggtagaaagaatgaagatcatgttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgt |
46283412 |
T |
|
| Q |
319 |
tggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283413 |
tggattcgaatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagat |
46283512 |
T |
|
| Q |
419 |
tggtgatgagaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
477 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46283513 |
tggtgatgagaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
46283571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 570 - 897
Target Start/End: Complemental strand, 3897265 - 3896938
Alignment:
| Q |
570 |
gatcttccatcaactcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtcttgacatgg |
669 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897265 |
gatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtcttgacatgg |
3897166 |
T |
|
| Q |
670 |
ctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttcctt |
769 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
3897165 |
ctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgttcttccat |
3897066 |
T |
|
| Q |
770 |
taatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaataatattgcatgtaattatatgtgtcggtgaa |
869 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3897065 |
taatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaataatattgcatgtaattatatgtgtcggtgaa |
3896966 |
T |
|
| Q |
870 |
tgaacaaaggcctattcttatcaaatgc |
897 |
Q |
| |
|
||||||||| |||||||||||||||||| |
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| T |
3896965 |
tgaacaaagacctattcttatcaaatgc |
3896938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 180; E-Value: 1e-96
Query Start/End: Original strand, 30 - 477
Target Start/End: Complemental strand, 3899154 - 3898713
Alignment:
| Q |
30 |
gcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagcttagcgtcgaag |
129 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| ||||||| | |||||||||||| | |||| |
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| T |
3899154 |
gcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagcttagcttggaag |
3899055 |
T |
|
| Q |
130 |
agaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaattgtttcttcgattgaacagaaggaagaaggtagaaa |
229 |
Q |
| |
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||| |||||| |||| |||||||||||||||| || || | | || ||||| |||| |||||| |||| ||| | |||||||||||||||| |
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|
| T |
3899054 |
agatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttc-------gaa--ggaggaagaaggtagaaa |
3898964 |
T |
|
| Q |
230 |
gaatgaagatcatg---ttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgttggattcg |
326 |
Q |
| |
|
|||||||||| || |||||| ||| ||| | |||| |||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| |
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| T |
3898963 |
gaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatccgagttggagaatgtttgtggtagtattctggagttgctggattcg |
3898864 |
T |
|
| Q |
327 |
aatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagattggtgatg |
426 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| | || |||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
3898863 |
aaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgagtttaagattggtgatg |
3898764 |
T |
|
| Q |
427 |
agaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
477 |
Q |
| |
|
| ||||||||||||| |||||||| ||| ||||||||||| |||||||||| |
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| T |
3898763 |
acaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
3898713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 562 - 701
Target Start/End: Original strand, 46283656 - 46283795
Alignment:
| Q |
562 |
ctgctgcggatcttccatcaactcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtct |
661 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||||||| || | | |||| ||| | |
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| T |
46283656 |
ctgctgcggatcttccatcaactcatcctataagattgggtttggctctcaatttctctgttttctattacgaaattctcaatcaatctgacaaagcttg |
46283755 |
T |
|
| Q |
662 |
tgacatggctagacaggtttgtgttaatccaatcttgttt |
701 |
Q |
| |
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||||||||| | ||||||||||||||||| ||||||||| |
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| T |
46283756 |
tgacatggccaaacaggtttgtgttaatctgatcttgttt |
46283795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: scaffold0137
Description:
Target: scaffold0137; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 562 - 897
Target Start/End: Complemental strand, 4929 - 4592
Alignment:
| Q |
562 |
ctgctgcggatcttccatcaactcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtct |
661 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4929 |
ctgctgcggatcttcgatcttctcatcctataagattgggtttggctttgaatttctcggttttctattatgaaattcttaaccggtttgacgaaggtct |
4830 |
T |
|
| Q |
662 |
tgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgt |
761 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4829 |
tgacatggctagacaggtttgtgttaatccaatcttgtttgtttgttttgcaatgactatgagggatatatgcactatgaagttatactaatagttgtgt |
4730 |
T |
|
| Q |
762 |
tcttcctttaatttgtgatgaatgttttctatgaagcacggacacgtcaacaatgataatagtttgagaaaattaataatatt--gcatgtaattatatg |
859 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4729 |
tcttccattaatttgtgatgaatgttttctatgaagcacggatacgtcaacaatgataatagtttgagaaaattaataatattaagcatgtaattatatg |
4630 |
T |
|
| Q |
860 |
tgtcggtgaatgaacaaaggcctattcttatcaaatgc |
897 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4629 |
tgtaggtgaatgaacaaaggcctattcttatcaaatgc |
4592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0137; HSP #2
Raw Score: 185; E-Value: 1e-99
Query Start/End: Original strand, 30 - 477
Target Start/End: Complemental strand, 5485 - 5044
Alignment:
| Q |
30 |
gcaaaactcgcagaacaagctgaacgctacgaggagatggtctccttcatgcagaagcttgtagtggggtccacaccatcatcagagcttagcgtcgaag |
129 |
Q |
| |
|
|||||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||| | || || |||| ||||||| | |||||||||||| | |||| |
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|
| T |
5485 |
gcaaaactagcacaacaagcggaacgctacgaggagatggtttccttcatgcagaagatagttgtagggtacacaccagcctcagagcttagcttggaag |
5386 |
T |
|
| Q |
130 |
agaggaacctcatatccgtcgcttacaagaacgtgatcggatcgctacgtgctgcgtggagaattgtttcttcgattgaacagaaggaagaaggtagaaa |
229 |
Q |
| |
|
||| |||||| |||| |||||||||||||||| || || | | || ||||| |||| |||||| |||| | || |||||||||||||||| |
|
|
| T |
5385 |
agatgaacctactatctgtcgcttacaagaacgcgaccgaaccacttcgtgcggcgttgagaatcctttc---------aaaggaggaagaaggtagaaa |
5295 |
T |
|
| Q |
230 |
gaatgaagatcatg---ttgtgcttgtgaaggattacagatccaaagttgaatcagagttgacgaatgtttgtggtagtattctggagttgttggattcg |
326 |
Q |
| |
|
|||||||||| || |||||| ||| ||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |
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|
| T |
5294 |
gaatgaagatgatcactttgtgcatgttaagaaatacaagtccaaagttgaatcagagttggagaatgtttgtggtagtattctggagttgctggattcg |
5195 |
T |
|
| Q |
327 |
aatcttataccttcagcttcttcgagtgaaagtaaggttttttattataagatgaaaggtgattatcataggtatttggctgagtttaagattggtgatg |
426 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| | || |||| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||| |
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|
| T |
5194 |
aaacttataccttctgcttcatcgagtgagattagggttgtttattatcagatgaaaggtgattatcaaaggtatatggctgagtttaagattggtgatg |
5095 |
T |
|
| Q |
427 |
agaaaaaatctgctgctgaggatactatgttgtcttacaaagctgcacagg |
477 |
Q |
| |
|
| ||||||||||||| |||||||| ||| ||||||||||| |||||||||| |
|
|
| T |
5094 |
acaaaaaatctgctgttgaggatattatcttgtcttacaaggctgcacagg |
5044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 374 - 417
Target Start/End: Original strand, 27125438 - 27125481
Alignment:
| Q |
374 |
taagatgaaaggtgattatcataggtatttggctgagtttaaga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
27125438 |
taagatgaaaggtgattatcataggtatcttgctgagtttaaga |
27125481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 597 - 634
Target Start/End: Complemental strand, 39356450 - 39356413
Alignment:
| Q |
597 |
ttgggtttggctttgaatttctcggttttctattatga |
634 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| |
|
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| T |
39356450 |
ttgggtctggctttgaatttctcagttttctattatga |
39356413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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