View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9812_high_24 (Length: 218)
Name: NF9812_high_24
Description: NF9812
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9812_high_24 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 8706251 - 8706450
Alignment:
| Q |
1 |
ttcaggcacaggaagaaaatttatttcctttctcaccacaacagtcttcaatctctgaaaatgagcaggaagtatcaatcccaaactcacgacttcacga |
100 |
Q |
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| T |
8706251 |
ttcaggcacaggaagaaaatttctttcctttctcaccacaacagtcttcaatctctgaaaatgagcaggaagtatcaatcccaaactcacgacttcacga |
8706350 |
T |
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| Q |
101 |
tgcctattttagaaatgacaacatcattgttcagagtccatttaaaactattgaagaggaagataagttcatcagttcaatgattattgacggggatttg |
200 |
Q |
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| T |
8706351 |
tgcctattttagaaatgacaacatcattgttcagagtccatttaaaactattgaagaggaagataagttcatcagttcaatgattattgacggggatttg |
8706450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 8744915 - 8745066
Alignment:
| Q |
39 |
caacagtcttcaatctctgaaaatgagcaggaagtatcaatcccaaactcacgacttcacgatgcctattttagaaatgacaacatcattgttcagagtc |
138 |
Q |
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| T |
8744915 |
caacaatcttcaatctatgaaaatgagcgggaagtatatttctcaaactcacaatttcaaggagattattttagaaatgaagacatggttattcagagtc |
8745014 |
T |
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| Q |
139 |
catttaaaactattgaagaggaagataagttcatcagttcaatgattattga |
190 |
Q |
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| T |
8745015 |
cctttgaaaccaatgaagaggaaaataacttcattaattcaatgattgttga |
8745066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 8691629 - 8691690
Alignment:
| Q |
15 |
gaaaatttatttcctttctcaccacaacagtcttcaatctctgaaaatgagcaggaagtatc |
76 |
Q |
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| T |
8691629 |
gaaaattactttcctttctcaacataccagccttcaatctctgaaaatgagaacgaagtatc |
8691690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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